Wall clock time and date at job start Mon Mar 30 2020 04:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 119.99510 * 2 1 4 4 H 1.48505 * 109.47448 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47061 * 119.99945 * 3 2 1 6 6 H 1.48503 * 109.47122 * 239.99753 * 3 2 1 7 7 C 1.38802 * 120.00169 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99920 * 166.18215 * 7 2 1 9 9 N 1.36946 * 120.00049 * 346.17874 * 7 2 1 10 10 C 1.46965 * 120.59011 * 149.99490 * 9 7 2 11 11 C 1.53814 * 108.39622 * 124.75807 * 10 9 7 12 12 N 1.46965 * 108.57815 * 49.63380 * 11 10 9 13 13 S 1.65607 * 120.59192 * 124.66897 * 12 11 10 14 14 O 1.42092 * 103.00145 * 4.74078 * 13 12 11 15 15 C 1.81398 * 102.99884 * 118.59674 * 13 12 11 16 16 C 1.54267 * 110.03322 * 302.31412 * 15 13 12 17 17 C 1.54892 * 104.19336 * 217.10945 * 16 15 13 18 18 C 1.54891 * 102.75084 * 37.93996 * 17 16 15 19 19 C 1.53876 * 110.02987 * 185.14660 * 15 13 12 20 20 C 1.46967 * 118.81373 * 304.64424 * 12 11 10 21 21 C 1.46965 * 120.59326 * 330.26975 * 9 7 2 22 22 H 0.97000 * 120.00276 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.60506 * 244.53812 * 10 9 7 24 24 H 1.08997 * 109.61387 * 5.04937 * 10 9 7 25 25 H 1.08998 * 109.74530 * 289.84639 * 11 10 9 26 26 H 1.08996 * 109.67235 * 169.38117 * 11 10 9 27 27 H 1.08999 * 110.01717 * 63.75725 * 15 13 12 28 28 H 1.09006 * 110.47975 * 335.78205 * 16 15 13 29 29 H 1.08995 * 110.48687 * 98.42825 * 16 15 13 30 30 H 1.08997 * 110.75351 * 279.62417 * 17 16 15 31 31 H 1.09002 * 110.75019 * 156.25574 * 17 16 15 32 32 H 1.08999 * 110.48294 * 203.37534 * 18 17 16 33 33 H 1.08993 * 110.59543 * 80.79403 * 18 17 16 34 34 H 1.09000 * 110.03343 * 238.56911 * 19 15 13 35 35 H 1.09001 * 110.03317 * 359.94900 * 19 15 13 36 36 H 1.08995 * 109.61070 * 295.48553 * 20 12 11 37 37 H 1.09003 * 109.61084 * 174.96968 * 20 12 11 38 38 H 1.08997 * 109.60749 * 354.95309 * 21 9 7 39 39 H 1.08998 * 109.60401 * 115.45890 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2850 2.7465 -0.0006 5 1 3.1038 1.6965 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0668 -1.2154 -0.2239 9 7 1.3553 -2.3710 0.2823 10 6 1.8018 -3.6403 -0.3088 11 6 2.0642 -4.6404 0.8301 12 7 0.8986 -4.6470 1.7252 13 16 0.1066 -6.0606 2.0671 14 8 0.9038 -7.0395 1.4151 15 6 0.3068 -6.2163 3.8633 16 6 1.8053 -6.2222 4.2295 17 6 1.9068 -7.2337 5.3981 18 6 0.9008 -8.3363 4.9842 19 6 -0.2683 -7.5604 4.3432 20 6 0.4487 -3.3768 2.3118 21 6 0.1898 -2.3777 1.1774 22 1 -0.4850 0.8400 -0.0004 23 1 1.0266 -4.0290 -0.9692 24 1 2.7196 -3.4780 -0.8738 25 1 2.9515 -4.3395 1.3872 26 1 2.2130 -5.6375 0.4158 27 1 -0.1984 -5.3926 4.3678 28 1 2.4037 -6.5571 3.3821 29 1 2.1227 -5.2312 4.5540 30 1 1.6064 -6.7697 6.3376 31 1 2.9159 -7.6391 5.4715 32 1 0.5582 -8.8881 5.8595 33 1 1.3517 -9.0142 4.2595 34 1 -1.0520 -7.3891 5.0812 35 1 -0.6685 -8.1188 3.4969 36 1 1.2210 -2.9860 2.9743 37 1 -0.4712 -3.5388 2.8737 38 1 0.0428 -1.3812 1.5940 39 1 -0.6975 -2.6785 0.6204 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395071006.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:40 Heat of formation + Delta-G solvation = -19.391906 kcal Electronic energy + Delta-G solvation = -19928.017913 eV Core-core repulsion = 16997.344246 eV Total energy + Delta-G solvation = -2930.673667 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -37.69698 -37.31059 -35.42101 -33.57437 -30.97199 -30.00444 -28.70943 -28.65589 -26.12100 -22.99927 -22.72276 -20.71378 -20.39618 -19.56381 -17.69032 -16.97863 -16.05176 -15.57592 -15.29503 -14.69290 -14.44555 -14.27543 -13.56432 -13.45350 -13.39131 -13.12665 -12.74376 -12.16022 -12.04154 -11.56112 -11.30328 -11.23449 -11.17443 -11.04376 -10.83925 -10.74843 -10.66766 -10.62804 -10.43576 -10.13410 -10.10052 -9.85817 -9.62060 -8.68544 -8.48948 -7.51892 -6.57851 -5.79373 -3.25662 2.31646 2.88645 3.37106 3.42451 3.44021 4.12404 4.48037 4.56152 4.66369 4.89640 5.30728 5.37328 5.38241 5.44573 5.53387 5.62420 5.67132 5.72684 5.82146 5.88633 5.96188 5.99992 6.10454 6.14616 6.22676 6.26606 6.32650 6.35011 6.49821 6.59651 6.85517 6.99800 7.15375 7.45677 7.66996 7.77581 8.44676 9.20414 9.82237 10.40764 11.27393 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.036067 B = 0.004801 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.137838 B = 5830.123111 C = 5989.864258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.004 3.996 3 Si 0.904 3.096 4 H -0.290 1.290 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.252 4.252 8 H 0.063 0.937 9 N -0.590 5.590 10 C 0.139 3.861 11 C 0.103 3.897 12 N -0.867 5.867 13 S 1.488 4.512 14 O -0.886 6.886 15 C -0.474 4.474 16 C -0.099 4.099 17 C -0.121 4.121 18 C -0.124 4.124 19 C -0.087 4.087 20 C 0.110 3.890 21 C 0.159 3.841 22 H 0.255 0.745 23 H 0.022 0.978 24 H 0.058 0.942 25 H 0.043 0.957 26 H 0.076 0.924 27 H 0.110 0.890 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.046 0.954 37 H 0.065 0.935 38 H 0.097 0.903 39 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.632 -11.808 9.231 15.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.195 4.195 3 Si 0.734 3.266 4 H -0.216 1.216 5 H -0.211 1.211 6 H -0.209 1.209 7 C -0.382 4.382 8 H 0.081 0.919 9 N -0.313 5.313 10 C 0.011 3.989 11 C -0.026 4.026 12 N -0.699 5.699 13 S 1.588 4.412 14 O -0.872 6.872 15 C -0.588 4.588 16 C -0.137 4.137 17 C -0.159 4.159 18 C -0.162 4.162 19 C -0.127 4.127 20 C -0.018 4.018 21 C 0.032 3.968 22 H 0.065 0.935 23 H 0.040 0.960 24 H 0.076 0.924 25 H 0.061 0.939 26 H 0.094 0.906 27 H 0.129 0.871 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.115 0.885 39 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -4.116 -12.230 8.558 15.484 hybrid contribution 2.556 0.848 0.836 2.820 sum -1.560 -11.381 9.394 14.839 Atomic orbital electron populations 1.69961 1.05180 1.25605 1.54192 1.25076 0.95366 0.98308 1.00722 0.86349 0.78863 0.83285 0.78102 1.21572 1.21098 1.20932 1.19161 0.91578 0.84368 1.43048 0.91945 1.43911 1.33948 1.02391 1.51019 1.21306 0.97828 0.87230 0.92561 1.21985 0.87766 1.00028 0.92819 1.55034 1.41752 1.17123 1.55974 1.69799 1.12498 0.76739 0.82162 1.92974 1.70960 1.56082 1.67149 1.29122 1.00406 1.02244 1.27050 1.22123 0.94160 0.99234 0.98187 1.22463 0.98712 0.96418 0.98304 1.22351 0.96284 0.97663 0.99932 1.21647 0.97776 0.93567 0.99671 1.22142 0.97374 0.84958 0.97340 1.21185 0.88785 0.97858 0.89002 0.93526 0.96049 0.92376 0.93865 0.90624 0.87144 0.92079 0.91825 0.91728 0.92219 0.91905 0.91792 0.91289 0.92366 0.93534 0.91689 0.88517 0.95767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.30 11.08 55.49 0.61 -24.69 16 2 C 0.00 0.10 4.99 -17.43 -0.09 0.01 16 3 Si 0.90 21.34 29.57 -169.99 -5.03 16.32 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 7 C -0.25 -6.82 9.58 -15.06 -0.14 -6.96 16 8 H 0.06 1.68 7.87 -52.49 -0.41 1.27 16 9 N -0.59 -14.55 2.96 -171.77 -0.51 -15.06 16 10 C 0.14 3.01 6.70 -3.36 -0.02 2.99 16 11 C 0.10 2.00 6.61 -3.36 -0.02 1.97 16 12 N -0.87 -14.72 2.96 -113.01 -0.34 -15.05 16 13 S 1.49 20.65 12.98 -107.50 -1.40 19.26 16 14 O -0.89 -16.73 15.48 -35.23 -0.55 -17.27 16 15 C -0.47 -5.80 3.34 -25.61 -0.09 -5.89 16 16 C -0.10 -1.39 6.17 -25.07 -0.15 -1.55 16 17 C -0.12 -1.45 6.91 -24.74 -0.17 -1.62 16 18 C -0.12 -1.41 6.83 -25.07 -0.17 -1.58 16 19 C -0.09 -0.95 6.48 -25.61 -0.17 -1.11 16 20 C 0.11 1.89 6.48 -3.60 -0.02 1.87 16 21 C 0.16 3.54 5.48 -3.60 -0.02 3.52 16 22 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 23 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.06 1.24 7.93 -51.93 -0.41 0.82 16 25 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 26 H 0.08 1.48 6.49 -51.93 -0.34 1.15 16 27 H 0.11 1.18 8.13 -51.93 -0.42 0.76 16 28 H 0.06 1.02 7.35 -51.93 -0.38 0.64 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.61 7.60 -51.93 -0.39 0.21 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.85 7.89 -51.93 -0.41 0.44 16 38 H 0.10 2.40 5.98 -51.93 -0.31 2.08 16 39 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 314.91 15.07 4.75 4.75 Total: -1.00 -32.36 314.91 -9.96 -42.32 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -6.44 Total: -2.22 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: -1.07 Total: -8.36 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: -0.23 Total: -54.80 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: -0.55 Total: -17.27 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.32 kcal Atomic # 16 Polarization: 20.65 SS G_CDS: -1.40 Total: 19.26 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.36 -9.96 -42.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395071006.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.933 kcal (2) G-P(sol) polarization free energy of solvation -32.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds