Wall clock time and date at job start Mon Mar 30 2020 04:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86803 * 119.99723 * 2 1 4 4 H 1.48501 * 109.47212 * 269.99366 * 3 2 1 5 5 H 1.48496 * 109.47415 * 29.99661 * 3 2 1 6 6 H 1.48498 * 109.46958 * 149.99560 * 3 2 1 7 7 C 1.39943 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99788 * 197.84984 * 7 2 1 9 9 C 1.41388 * 120.00350 * 17.85161 * 7 2 1 10 10 C 1.40716 * 120.24555 * 204.38583 * 9 7 2 11 11 C 1.37618 * 119.74522 * 180.02562 * 10 9 7 12 12 C 1.38639 * 120.24691 * 0.02740 * 11 10 9 13 13 C 1.50702 * 119.74660 * 179.97438 * 12 11 10 14 14 N 1.46901 * 109.47201 * 89.99632 * 13 12 11 15 15 C 1.46907 * 111.00229 * 179.97438 * 14 13 12 16 16 C 1.52996 * 109.47168 * 180.02562 * 15 14 13 17 17 N 1.46503 * 109.46787 * 180.02562 * 16 15 14 18 18 C 1.35495 * 126.97952 * 269.68182 * 17 16 15 19 19 N 1.30523 * 107.30374 * 180.26251 * 18 17 16 20 20 N 1.28591 * 109.67572 * 0.02562 * 19 18 17 21 21 C 1.30521 * 109.67602 * 359.97438 * 20 19 18 22 22 C 1.38631 * 120.50402 * 0.24166 * 12 11 10 23 23 C 1.37620 * 120.24401 * 359.45777 * 22 12 11 24 24 H 0.97004 * 119.99921 * 0.02562 * 1 2 3 25 25 H 1.07990 * 120.12795 * 359.97438 * 10 9 7 26 26 H 1.07997 * 119.87727 * 179.97438 * 11 10 9 27 27 H 1.08998 * 109.47507 * 329.99771 * 13 12 11 28 28 H 1.09007 * 109.46934 * 209.99223 * 13 12 11 29 29 H 1.00902 * 111.00192 * 56.04567 * 14 13 12 30 30 H 1.08995 * 109.46470 * 59.99796 * 15 14 13 31 31 H 1.09002 * 109.46562 * 300.00268 * 15 14 13 32 32 H 1.09002 * 109.47248 * 59.99911 * 16 15 14 33 33 H 1.09002 * 109.46720 * 299.99548 * 16 15 14 34 34 H 1.07994 * 126.34555 * 0.24519 * 18 17 16 35 35 H 1.07994 * 126.35094 * 179.97438 * 21 20 19 36 36 H 1.07999 * 119.87662 * 179.70413 * 22 12 11 37 37 H 1.08009 * 120.12867 * 180.27194 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4396 2.6527 0.6999 6 1 3.5396 1.4403 0.7001 7 6 2.0079 -1.2119 0.0005 8 1 3.0490 -1.2343 0.2873 9 6 1.3521 -2.4071 -0.3743 10 6 1.8259 -3.6498 0.0856 11 6 1.1800 -4.8067 -0.2861 12 6 0.0669 -4.7511 -1.1107 13 6 -0.6315 -6.0251 -1.5111 14 7 -1.6775 -6.3398 -0.5289 15 6 -2.3816 -7.5781 -0.8879 16 6 -3.4612 -7.8718 0.1556 17 7 -4.1629 -9.1071 -0.2022 18 6 -5.2708 -9.2209 -0.9738 19 7 -5.5714 -10.4894 -1.0369 20 7 -4.7213 -11.1703 -0.3532 21 6 -3.8394 -10.3672 0.1766 22 6 -0.4053 -3.5329 -1.5742 23 6 0.2211 -2.3628 -1.2104 24 1 -0.4850 0.8401 -0.0004 25 1 2.6935 -3.6955 0.7270 26 1 1.5420 -5.7616 0.0653 27 1 0.0913 -6.8403 -1.5459 28 1 -1.0834 -5.8980 -2.4949 29 1 -2.3245 -5.5717 -0.4310 30 1 -1.6710 -8.4041 -0.9186 31 1 -2.8455 -7.4613 -1.8673 32 1 -4.1716 -7.0456 0.1859 33 1 -2.9975 -7.9885 1.1352 34 1 -5.8060 -8.4118 -1.4485 35 1 -3.0066 -10.6538 0.8016 36 1 -1.2704 -3.5017 -2.2200 37 1 -0.1510 -1.4144 -1.5690 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399029778.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:52 Heat of formation + Delta-G solvation = 80.125564 kcal Electronic energy + Delta-G solvation = -19069.012905 eV Core-core repulsion = 16039.503439 eV Total energy + Delta-G solvation = -3029.509466 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.02164 -39.60306 -37.80007 -36.02237 -35.05478 -32.27359 -31.53786 -31.12862 -29.89869 -27.59531 -25.03948 -23.81053 -23.24400 -22.87367 -22.56267 -21.60471 -19.20116 -18.36168 -17.48261 -17.05091 -16.65056 -16.19591 -16.07366 -15.66626 -15.56989 -15.18848 -15.05302 -14.71256 -14.15076 -13.80211 -13.77520 -13.32764 -13.06595 -12.87393 -12.65379 -12.55147 -12.40080 -12.24889 -12.03134 -11.43167 -11.34431 -11.24970 -11.10988 -10.99257 -10.43159 -9.46834 -9.29465 -9.16011 -8.63379 -6.32215 0.90194 0.96810 1.18613 1.38314 1.48994 1.50684 1.60859 1.92509 2.20847 2.70218 3.35899 3.64080 3.78068 3.80775 3.89647 3.97524 4.28343 4.32787 4.38541 4.42310 4.47645 4.62199 4.68290 4.82604 4.85211 4.97857 5.07842 5.17809 5.23541 5.40267 5.49867 5.73334 5.90891 5.98107 6.08532 6.13012 6.24824 6.42344 6.46157 6.73115 6.96389 7.06428 7.74375 8.33264 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.048083 B = 0.002688 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.189665 B =10415.432815 C =10676.682555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.036 3.964 3 Si 0.979 3.021 4 H -0.263 1.263 5 H -0.267 1.267 6 H -0.260 1.260 7 C -0.503 4.503 8 H 0.072 0.928 9 C 0.079 3.921 10 C -0.247 4.247 11 C -0.071 4.071 12 C -0.201 4.201 13 C 0.134 3.866 14 N -0.685 5.685 15 C 0.050 3.950 16 C 0.113 3.887 17 N -0.468 5.468 18 C 0.159 3.841 19 N -0.351 5.351 20 N -0.352 5.352 21 C 0.162 3.838 22 C -0.096 4.096 23 C -0.192 4.192 24 H 0.287 0.713 25 H 0.092 0.908 26 H 0.114 0.886 27 H 0.074 0.926 28 H 0.032 0.968 29 H 0.346 0.654 30 H 0.076 0.924 31 H 0.036 0.964 32 H 0.116 0.884 33 H 0.120 0.880 34 H 0.249 0.751 35 H 0.250 0.750 36 H 0.106 0.894 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.021 -9.038 -0.425 10.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.179 4.179 3 Si 0.800 3.200 4 H -0.188 1.188 5 H -0.192 1.192 6 H -0.184 1.184 7 C -0.533 4.533 8 H 0.090 0.910 9 C 0.076 3.924 10 C -0.266 4.266 11 C -0.089 4.089 12 C -0.203 4.203 13 C 0.006 3.994 14 N -0.317 5.317 15 C -0.080 4.080 16 C -0.009 4.009 17 N -0.158 5.158 18 C -0.130 4.130 19 N -0.190 5.190 20 N -0.190 5.190 21 C -0.127 4.127 22 C -0.115 4.115 23 C -0.211 4.211 24 H 0.098 0.902 25 H 0.110 0.890 26 H 0.132 0.868 27 H 0.092 0.908 28 H 0.051 0.949 29 H 0.164 0.836 30 H 0.094 0.906 31 H 0.054 0.946 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.265 0.735 35 H 0.265 0.735 36 H 0.124 0.876 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.528 -10.489 -0.340 12.359 hybrid contribution 0.588 2.443 -0.329 2.534 sum -5.940 -8.046 -0.668 10.024 Atomic orbital electron populations 1.69866 1.08849 1.30429 1.35800 1.26702 0.95512 1.04339 0.91326 0.85246 0.79105 0.76163 0.79464 1.18767 1.19203 1.18408 1.19842 0.98289 0.92737 1.42389 0.91022 1.17975 0.92038 0.92998 0.89354 1.21185 1.04489 0.93392 1.07560 1.20655 0.95202 0.96568 0.96495 1.19295 1.00288 0.93763 1.06921 1.20436 0.92983 0.94099 0.91870 1.60452 1.16053 1.05763 1.49477 1.22197 0.95591 0.93918 0.96299 1.22006 0.95057 0.83344 1.00479 1.46615 1.22483 1.09318 1.37417 1.27167 0.90019 0.98464 0.97353 1.74154 1.22422 1.02969 1.19448 1.74158 1.04166 1.28455 1.12234 1.27186 1.02567 0.80388 1.02588 1.20787 0.98654 0.92528 0.99487 1.21261 1.00348 0.97197 1.02318 0.90197 0.88986 0.86798 0.90786 0.94945 0.83606 0.90579 0.94620 0.86541 0.86197 0.73526 0.73453 0.87562 0.88392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.12 10.95 21.83 0.24 -41.88 16 2 C 0.04 1.79 5.14 85.26 0.44 2.23 16 3 Si 0.98 37.63 29.60 68.60 2.03 39.66 16 4 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16 5 H -0.27 -9.72 7.11 99.48 0.71 -9.02 16 6 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 7 C -0.50 -26.89 9.05 23.46 0.21 -26.68 16 8 H 0.07 3.73 7.91 -2.91 -0.02 3.71 16 9 C 0.08 4.16 5.57 -21.29 -0.12 4.04 16 10 C -0.25 -11.76 9.80 22.73 0.22 -11.54 16 11 C -0.07 -2.87 9.67 22.22 0.21 -2.65 16 12 C -0.20 -7.53 5.42 -19.67 -0.11 -7.64 16 13 C 0.13 3.65 5.80 85.56 0.50 4.14 16 14 N -0.69 -15.02 6.49 -517.91 -3.36 -18.38 16 15 C 0.05 0.76 6.01 86.30 0.52 1.28 16 16 C 0.11 1.21 6.46 86.38 0.56 1.77 16 17 N -0.47 -6.80 2.75 -533.48 -1.47 -8.26 16 18 C 0.16 2.71 12.74 180.11 2.30 5.01 16 19 N -0.35 -9.10 12.21 -59.99 -0.73 -9.83 16 20 N -0.35 -9.11 12.21 -59.99 -0.73 -9.84 16 21 C 0.16 2.78 12.74 180.11 2.30 5.08 16 22 C -0.10 -4.02 9.67 22.22 0.21 -3.81 16 23 C -0.19 -9.67 8.70 22.73 0.20 -9.47 16 24 H 0.29 13.25 8.30 -92.71 -0.77 12.48 16 25 H 0.09 4.22 8.06 -2.92 -0.02 4.20 16 26 H 0.11 3.98 8.06 -2.91 -0.02 3.96 16 27 H 0.07 1.90 8.08 -2.39 -0.02 1.88 16 28 H 0.03 0.83 8.08 -2.38 -0.02 0.81 16 29 H 0.35 7.60 8.72 -89.69 -0.78 6.81 16 30 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.25 2.13 8.06 -2.91 -0.02 2.11 16 35 H 0.25 2.21 8.06 -2.91 -0.02 2.19 16 36 H 0.11 3.88 8.06 -2.91 -0.02 3.85 16 37 H 0.10 5.22 6.16 -2.91 -0.02 5.21 16 Total: -1.00 -66.77 322.40 3.71 -63.06 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: 0.29 Total: 23.72 kcal Atomic # 6 Polarization: -45.68 SS G_CDS: 7.44 Total: -38.24 kcal Atomic # 7 Polarization: -82.14 SS G_CDS: -6.05 Total: -88.19 kcal Atomic # 14 Polarization: 37.63 SS G_CDS: 2.03 Total: 39.66 kcal Total: -66.77 3.71 -63.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399029778.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.188 kcal (2) G-P(sol) polarization free energy of solvation -66.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds