Wall clock time and date at job start Mon Mar 30 2020 05:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81403 * 102.99976 * 2 1 4 4 C 1.52999 * 109.46857 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46725 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.47238 * 304.99859 * 5 4 3 7 7 N 1.46900 * 109.47536 * 65.00033 * 5 4 3 8 8 C 1.50702 * 109.46960 * 185.00214 * 5 4 3 9 9 O 1.21285 * 119.99434 * 259.99592 * 8 5 4 10 10 N 1.34776 * 120.00416 * 79.99915 * 8 5 4 11 11 C 1.46497 * 120.00155 * 180.02562 * 10 8 5 12 12 C 1.53002 * 109.47308 * 178.27937 * 11 10 8 13 13 C 1.50699 * 115.55011 * 65.13689 * 12 11 10 14 14 H 1.08000 * 120.00003 * 265.40641 * 13 12 11 15 15 C 1.37880 * 120.00141 * 85.40819 * 13 12 11 16 16 N 1.31516 * 119.99591 * 353.55934 * 15 13 12 17 17 Si 1.86800 * 120.00025 * 173.55529 * 15 13 12 18 18 H 1.48495 * 109.47252 * 60.00226 * 17 15 13 19 19 H 1.48499 * 109.46978 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47113 * 299.99954 * 17 15 13 21 21 C 1.53002 * 117.49460 * 279.47027 * 12 11 10 22 22 C 1.53004 * 117.49777 * 210.81014 * 12 11 10 23 23 H 1.08997 * 109.47433 * 299.99961 * 1 2 3 24 24 H 1.09000 * 109.47096 * 60.00015 * 1 2 3 25 25 H 1.09004 * 109.47165 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46987 * 59.99970 * 3 2 1 27 27 H 1.08997 * 109.47166 * 299.99724 * 3 2 1 28 28 H 1.08995 * 109.47337 * 60.00195 * 4 3 2 29 29 H 1.09001 * 109.47468 * 299.99630 * 4 3 2 30 30 H 1.00898 * 111.00049 * 59.99468 * 7 5 4 31 31 H 1.00892 * 111.00043 * 183.95573 * 7 5 4 32 32 H 0.96998 * 119.99516 * 359.97438 * 10 8 5 33 33 H 1.09008 * 109.46739 * 298.27361 * 11 10 8 34 34 H 1.08992 * 109.47453 * 58.27287 * 11 10 8 35 35 H 0.97002 * 119.99833 * 185.06952 * 16 15 13 36 36 H 1.09001 * 117.49768 * 359.97438 * 21 12 11 37 37 H 1.09000 * 117.49854 * 145.02223 * 21 12 11 38 38 H 1.09004 * 117.49516 * 214.97659 * 22 12 11 39 39 H 1.08994 * 117.49834 * 359.97183 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9399 0.0006 5 6 4.0864 3.4307 0.0013 6 1 3.5941 3.9176 -0.8406 7 7 3.6258 4.0392 1.2565 8 6 5.5786 3.6018 -0.1220 9 8 6.2461 3.8313 0.8643 10 7 6.1713 3.5000 -1.3281 11 6 7.6219 3.6657 -1.4478 12 6 8.0402 3.4609 -2.9052 13 6 7.5174 4.4831 -3.8813 14 1 6.6079 4.2895 -4.4305 15 6 8.2002 5.6655 -4.0731 16 7 9.2348 5.9576 -3.3156 17 14 7.6558 6.8522 -5.4090 18 1 6.2587 7.2830 -5.1492 19 1 8.5482 8.0392 -5.4103 20 1 7.7284 6.1777 -6.7300 21 6 8.1890 2.0213 -3.4017 22 6 9.4325 2.8824 -3.1659 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8031 2.2371 0.8899 27 1 1.8031 2.2371 -0.8900 28 1 4.1616 1.4703 -0.8891 29 1 4.1609 1.4704 0.8909 30 1 4.0680 3.6047 2.0526 31 1 3.7834 5.0357 1.2545 32 1 5.6374 3.3161 -2.1168 33 1 7.9005 4.6698 -1.1276 34 1 8.1247 2.9312 -0.8188 35 1 9.6699 6.8205 -3.4005 36 1 7.9893 1.2203 -2.6899 37 1 7.9091 1.8137 -4.4345 38 1 9.9701 3.2410 -4.0437 39 1 10.0506 2.6482 -2.2992 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404143831.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:24 Heat of formation + Delta-G solvation = -31.449897 kcal Electronic energy + Delta-G solvation = -18891.043489 eV Core-core repulsion = 15959.846947 eV Total energy + Delta-G solvation = -2931.196541 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.52649 -36.88894 -35.47084 -33.40460 -32.02028 -31.27092 -29.16585 -27.37380 -25.70863 -24.71674 -21.94442 -21.19692 -19.77897 -19.27811 -17.18701 -16.53550 -16.19956 -15.84567 -15.35836 -14.86249 -14.74356 -14.28823 -14.06599 -14.00361 -13.59902 -13.35720 -13.16460 -12.81869 -12.70292 -11.95949 -11.88831 -11.64562 -11.31470 -11.11800 -11.04252 -10.96668 -10.59013 -10.31346 -10.13769 -9.92901 -9.65714 -9.02875 -8.74743 -8.54676 -8.32127 -8.13090 -7.82587 -6.12758 -4.21986 1.51492 2.45341 3.04624 3.22950 3.29524 3.30681 3.77994 4.30838 4.47549 4.75961 4.90740 4.91552 4.95696 5.06322 5.14923 5.22060 5.29428 5.41043 5.45828 5.58349 5.87594 5.97831 5.99655 6.29003 6.41504 6.50803 6.65688 6.80887 6.96854 7.05151 7.19025 7.37069 7.37617 7.43509 7.76106 8.18577 8.28638 8.73391 8.79479 9.45179 10.94995 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.020228 B = 0.004023 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.872882 B = 6958.067242 C = 6988.238547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 S -0.276 6.276 3 C -0.070 4.070 4 C -0.089 4.089 5 C 0.079 3.921 6 H 0.103 0.897 7 N -0.821 5.821 8 C 0.471 3.529 9 O -0.562 6.562 10 N -0.696 5.696 11 C 0.161 3.839 12 C 0.028 3.972 13 C -0.503 4.503 14 H 0.060 0.940 15 C 0.074 3.926 16 N -0.874 5.874 17 Si 0.891 3.109 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.210 4.210 22 C -0.148 4.148 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.098 0.902 26 H 0.095 0.905 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.349 0.651 31 H 0.346 0.654 32 H 0.401 0.599 33 H 0.072 0.928 34 H 0.037 0.963 35 H 0.263 0.737 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.057 -7.352 5.098 16.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 S -0.050 6.050 3 C -0.218 4.218 4 C -0.128 4.128 5 C -0.039 4.039 6 H 0.121 0.879 7 N -0.350 5.350 8 C 0.254 3.746 9 O -0.442 6.442 10 N -0.344 5.344 11 C 0.038 3.962 12 C 0.027 3.973 13 C -0.540 4.540 14 H 0.078 0.922 15 C -0.130 4.130 16 N -0.510 5.510 17 Si 0.719 3.281 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.201 1.201 21 C -0.247 4.247 22 C -0.186 4.186 23 H 0.094 0.906 24 H 0.094 0.906 25 H 0.117 0.883 26 H 0.114 0.886 27 H 0.099 0.901 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.162 0.838 31 H 0.159 0.841 32 H 0.235 0.765 33 H 0.090 0.910 34 H 0.055 0.945 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.444 -8.207 5.570 16.707 hybrid contribution -0.183 2.004 -1.029 2.260 sum -13.628 -6.203 4.540 15.646 Atomic orbital electron populations 1.23337 0.94341 1.06256 1.04857 1.86963 1.07212 1.12734 1.98123 1.23330 0.99725 0.92868 1.05864 1.21224 0.93471 0.93952 1.04153 1.21525 0.90617 0.96285 0.95480 0.87908 1.59205 1.63140 1.09280 1.03417 1.21728 0.91238 0.77686 0.83936 1.90662 1.65821 1.50323 1.37345 1.46084 1.10268 1.69324 1.08680 1.21016 0.77746 1.00618 0.96825 1.19021 0.96582 0.90293 0.91420 1.20305 1.09495 1.01445 1.22766 0.92212 1.24993 0.94341 0.97926 0.95754 1.69968 1.20825 1.21962 1.38261 0.86685 0.78499 0.80376 0.82588 1.20249 1.21258 1.20129 1.23029 1.05879 0.95262 1.00555 1.22495 0.91112 1.03534 1.01489 0.90560 0.90562 0.88330 0.88626 0.90088 0.89987 0.90474 0.83759 0.84133 0.76495 0.91019 0.94514 0.92749 0.91631 0.90291 0.89804 0.91705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.89 10.76 101.05 1.09 0.19 16 2 S -0.28 -2.97 22.38 -107.50 -2.41 -5.38 16 3 C -0.07 -0.70 5.83 37.16 0.22 -0.49 16 4 C -0.09 -1.02 4.85 -26.73 -0.13 -1.15 16 5 C 0.08 1.00 3.15 -68.86 -0.22 0.78 16 6 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 7 N -0.82 -9.68 8.44 -5.65 -0.05 -9.73 16 8 C 0.47 8.19 7.07 -10.98 -0.08 8.12 16 9 O -0.56 -11.77 16.25 5.55 0.09 -11.68 16 10 N -0.70 -12.88 5.47 -60.29 -0.33 -13.21 16 11 C 0.16 3.59 5.50 -4.04 -0.02 3.57 16 12 C 0.03 0.64 1.38 -155.66 -0.21 0.42 16 13 C -0.50 -12.67 8.63 -34.44 -0.30 -12.97 16 14 H 0.06 1.47 7.82 -52.49 -0.41 1.06 16 15 C 0.07 1.94 5.39 -17.82 -0.10 1.84 16 16 N -0.87 -24.00 12.91 55.43 0.72 -23.28 16 17 Si 0.89 20.24 29.55 -169.99 -5.02 15.22 16 18 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 19 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 21 C -0.21 -4.30 9.96 -26.69 -0.27 -4.57 16 22 C -0.15 -3.35 9.42 -26.69 -0.25 -3.60 16 23 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.08 0.51 8.14 -51.92 -0.42 0.09 16 25 H 0.10 0.63 8.14 -51.92 -0.42 0.21 16 26 H 0.10 0.96 7.75 -51.93 -0.40 0.56 16 27 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.35 4.30 8.58 -39.29 -0.34 3.96 16 31 H 0.35 4.07 9.06 -39.30 -0.36 3.72 16 32 H 0.40 6.77 8.37 -40.82 -0.34 6.43 16 33 H 0.07 1.85 8.14 -51.92 -0.42 1.42 16 34 H 0.04 0.82 8.09 -51.93 -0.42 0.40 16 35 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 36 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 38 H 0.08 2.02 8.14 -51.93 -0.42 1.60 16 39 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 343.94 15.07 5.18 5.18 Total: -1.00 -28.66 343.94 -8.56 -37.22 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: -6.48 Total: 13.51 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: -0.27 Total: -7.86 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: 0.34 Total: -46.21 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.09 Total: -11.68 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 16 Polarization: -2.97 SS G_CDS: -2.41 Total: -5.38 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -28.66 -8.56 -37.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404143831.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.767 kcal (2) G-P(sol) polarization free energy of solvation -28.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds