Wall clock time and date at job start Mon Mar 30 2020 05:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81403 * 102.99976 * 2 1 4 4 C 1.52999 * 109.46857 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46725 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.47238 * 304.99859 * 5 4 3 7 7 N 1.46900 * 109.47536 * 65.00033 * 5 4 3 8 8 C 1.50702 * 109.46960 * 185.00214 * 5 4 3 9 9 O 1.21285 * 119.99434 * 259.99592 * 8 5 4 10 10 N 1.34776 * 120.00416 * 79.99915 * 8 5 4 11 11 C 1.46497 * 120.00155 * 180.02562 * 10 8 5 12 12 C 1.53002 * 109.47308 * 178.27937 * 11 10 8 13 13 C 1.50699 * 115.55011 * 65.13689 * 12 11 10 14 14 H 1.08000 * 120.00003 * 265.40641 * 13 12 11 15 15 C 1.37880 * 120.00141 * 85.40819 * 13 12 11 16 16 N 1.31516 * 119.99591 * 353.55934 * 15 13 12 17 17 Si 1.86800 * 120.00025 * 173.55529 * 15 13 12 18 18 H 1.48495 * 109.47252 * 60.00226 * 17 15 13 19 19 H 1.48499 * 109.46978 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47113 * 299.99954 * 17 15 13 21 21 C 1.53002 * 117.49460 * 279.47027 * 12 11 10 22 22 C 1.53004 * 117.49777 * 210.81014 * 12 11 10 23 23 H 1.08997 * 109.47433 * 299.99961 * 1 2 3 24 24 H 1.09000 * 109.47096 * 60.00015 * 1 2 3 25 25 H 1.09004 * 109.47165 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46987 * 59.99970 * 3 2 1 27 27 H 1.08997 * 109.47166 * 299.99724 * 3 2 1 28 28 H 1.08995 * 109.47337 * 60.00195 * 4 3 2 29 29 H 1.09001 * 109.47468 * 299.99630 * 4 3 2 30 30 H 1.00898 * 111.00049 * 59.99468 * 7 5 4 31 31 H 1.00892 * 111.00043 * 183.95573 * 7 5 4 32 32 H 0.96998 * 119.99516 * 359.97438 * 10 8 5 33 33 H 1.09008 * 109.46739 * 298.27361 * 11 10 8 34 34 H 1.08992 * 109.47453 * 58.27287 * 11 10 8 35 35 H 0.97002 * 119.99833 * 185.06952 * 16 15 13 36 36 H 1.09001 * 117.49768 * 359.97438 * 21 12 11 37 37 H 1.09000 * 117.49854 * 145.02223 * 21 12 11 38 38 H 1.09004 * 117.49516 * 214.97659 * 22 12 11 39 39 H 1.08994 * 117.49834 * 359.97183 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9399 0.0006 5 6 4.0864 3.4307 0.0013 6 1 3.5941 3.9176 -0.8406 7 7 3.6258 4.0392 1.2565 8 6 5.5786 3.6018 -0.1220 9 8 6.2461 3.8313 0.8643 10 7 6.1713 3.5000 -1.3281 11 6 7.6219 3.6657 -1.4478 12 6 8.0402 3.4609 -2.9052 13 6 7.5174 4.4831 -3.8813 14 1 6.6079 4.2895 -4.4305 15 6 8.2002 5.6655 -4.0731 16 7 9.2348 5.9576 -3.3156 17 14 7.6558 6.8522 -5.4090 18 1 6.2587 7.2830 -5.1492 19 1 8.5482 8.0392 -5.4103 20 1 7.7284 6.1777 -6.7300 21 6 8.1890 2.0213 -3.4017 22 6 9.4325 2.8824 -3.1659 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8031 2.2371 0.8899 27 1 1.8031 2.2371 -0.8900 28 1 4.1616 1.4703 -0.8891 29 1 4.1609 1.4704 0.8909 30 1 4.0680 3.6047 2.0526 31 1 3.7834 5.0357 1.2545 32 1 5.6374 3.3161 -2.1168 33 1 7.9005 4.6698 -1.1276 34 1 8.1247 2.9312 -0.8188 35 1 9.6699 6.8205 -3.4005 36 1 7.9893 1.2203 -2.6899 37 1 7.9091 1.8137 -4.4345 38 1 9.9701 3.2410 -4.0437 39 1 10.0506 2.6482 -2.2992 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404143831.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:23 Heat of formation + Delta-G solvation = -50.775665 kcal Electronic energy + Delta-G solvation = -18891.881517 eV Core-core repulsion = 15959.846947 eV Total energy + Delta-G solvation = -2932.034569 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.95491 -38.60598 -36.62783 -35.00318 -33.97808 -32.20006 -29.75610 -28.83499 -27.51837 -26.10714 -23.14894 -22.83651 -21.37746 -20.86222 -18.62261 -17.94815 -17.43159 -16.89979 -16.78022 -16.57724 -16.04894 -15.80473 -15.40390 -14.92202 -14.72602 -14.52031 -14.24344 -14.09784 -13.73048 -13.61189 -13.45563 -12.94712 -12.85539 -12.79447 -12.39930 -12.24820 -12.07716 -12.06331 -11.51118 -11.27741 -10.87886 -10.85660 -10.47939 -10.18657 -9.88714 -9.73048 -8.63640 -8.10807 -6.24458 0.77049 1.43263 1.45509 1.51548 1.64419 1.75833 2.35149 2.43148 3.17543 3.40868 3.50169 3.78500 4.01537 4.05417 4.18146 4.24456 4.38780 4.39942 4.41991 4.53210 4.62611 4.69732 4.70752 4.93776 4.95766 4.97732 5.01560 5.10215 5.25041 5.55200 5.57832 5.65011 5.76714 5.93685 6.35150 6.36087 6.72337 6.83429 7.31311 7.45564 8.96544 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.020228 B = 0.004023 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.872882 B = 6958.067242 C = 6988.238547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 S -0.328 6.328 3 C -0.055 4.055 4 C -0.082 4.082 5 C 0.094 3.906 6 H 0.124 0.876 7 N -0.810 5.810 8 C 0.469 3.531 9 O -0.600 6.600 10 N -0.693 5.693 11 C 0.178 3.822 12 C 0.007 3.993 13 C -0.506 4.506 14 H 0.066 0.934 15 C 0.025 3.975 16 N -0.909 5.909 17 Si 0.950 3.050 18 H -0.269 1.269 19 H -0.293 1.293 20 H -0.270 1.270 21 C -0.176 4.176 22 C -0.162 4.162 23 H 0.085 0.915 24 H 0.086 0.914 25 H 0.109 0.891 26 H 0.098 0.902 27 H 0.094 0.906 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.347 0.653 31 H 0.348 0.652 32 H 0.411 0.589 33 H 0.028 0.972 34 H 0.032 0.968 35 H 0.259 0.741 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.063 0.937 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.533 -8.003 4.415 18.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 S -0.103 6.103 3 C -0.202 4.202 4 C -0.121 4.121 5 C -0.024 4.024 6 H 0.141 0.859 7 N -0.338 5.338 8 C 0.254 3.746 9 O -0.482 6.482 10 N -0.341 5.341 11 C 0.053 3.947 12 C 0.007 3.993 13 C -0.543 4.543 14 H 0.084 0.916 15 C -0.176 4.176 16 N -0.546 5.546 17 Si 0.776 3.224 18 H -0.194 1.194 19 H -0.219 1.219 20 H -0.196 1.196 21 C -0.213 4.213 22 C -0.200 4.200 23 H 0.104 0.896 24 H 0.105 0.895 25 H 0.127 0.873 26 H 0.116 0.884 27 H 0.112 0.888 28 H 0.099 0.901 29 H 0.083 0.917 30 H 0.160 0.840 31 H 0.161 0.839 32 H 0.247 0.753 33 H 0.046 0.954 34 H 0.050 0.950 35 H 0.068 0.932 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.082 0.918 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.964 -8.871 4.873 18.902 hybrid contribution 0.558 2.160 -0.772 2.361 sum -15.406 -6.711 4.101 17.297 Atomic orbital electron populations 1.23390 0.90915 1.07308 1.05864 1.87151 1.11081 1.13794 1.98257 1.23191 0.98262 0.92213 1.06582 1.21145 0.94778 0.92640 1.03567 1.21550 0.86777 0.97509 0.96587 0.85851 1.59246 1.62226 1.09388 1.02960 1.22701 0.93169 0.75997 0.82726 1.90644 1.67272 1.51768 1.38494 1.45986 1.08780 1.69617 1.09753 1.20541 0.80109 0.97853 0.96163 1.19054 0.96996 0.91825 0.91462 1.20642 1.09386 1.01714 1.22589 0.91607 1.25714 0.94567 0.99757 0.97538 1.70104 1.22263 1.22206 1.40065 0.85738 0.78180 0.78214 0.80244 1.19366 1.21908 1.19557 1.23010 1.02787 0.94133 1.01378 1.22435 0.91530 1.05087 1.00958 0.89589 0.89487 0.87287 0.88390 0.88766 0.90086 0.91681 0.83966 0.83940 0.75321 0.95371 0.95000 0.93243 0.89420 0.89460 0.91836 0.91338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 10.76 113.37 1.22 -0.09 16 2 S -0.33 -6.48 22.38 -56.49 -1.26 -7.74 16 3 C -0.05 -0.97 5.83 71.98 0.42 -0.55 16 4 C -0.08 -1.75 4.85 30.59 0.15 -1.60 16 5 C 0.09 2.20 3.15 44.17 0.14 2.33 16 6 H 0.12 2.47 8.14 -2.39 -0.02 2.45 16 7 N -0.81 -17.69 8.44 -171.79 -1.45 -19.14 16 8 C 0.47 15.99 7.07 87.66 0.62 16.61 16 9 O -0.60 -25.30 16.25 -3.05 -0.05 -25.35 16 10 N -0.69 -25.18 5.47 -463.06 -2.54 -27.71 16 11 C 0.18 8.02 5.50 86.38 0.48 8.50 16 12 C 0.01 0.34 1.38 -52.93 -0.07 0.26 16 13 C -0.51 -25.21 8.63 25.60 0.22 -24.99 16 14 H 0.07 3.13 7.82 -2.91 -0.02 3.11 16 15 C 0.02 1.30 5.39 84.66 0.46 1.76 16 16 N -0.91 -50.95 12.91 21.45 0.28 -50.68 16 17 Si 0.95 41.36 29.55 68.60 2.03 43.39 16 18 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 19 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 20 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 21 C -0.18 -6.90 9.96 30.62 0.30 -6.59 16 22 C -0.16 -7.34 9.42 30.62 0.29 -7.05 16 23 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.10 1.71 7.75 -2.39 -0.02 1.69 16 27 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.08 1.76 8.14 -2.39 -0.02 1.75 16 29 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.35 8.14 8.58 -89.70 -0.77 7.37 16 31 H 0.35 7.63 9.06 -89.70 -0.81 6.82 16 32 H 0.41 13.22 8.37 -92.71 -0.78 12.45 16 33 H 0.03 1.50 8.14 -2.38 -0.02 1.48 16 34 H 0.03 1.44 8.09 -2.39 -0.02 1.42 16 35 H 0.26 14.07 8.32 -92.71 -0.77 13.30 16 36 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 37 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 38 H 0.06 3.11 8.14 -2.38 -0.02 3.09 16 39 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 Total: -1.00 -62.01 343.94 -0.08 -62.09 By element: Atomic # 1 Polarization: 37.84 SS G_CDS: -1.30 Total: 36.53 kcal Atomic # 6 Polarization: -15.62 SS G_CDS: 4.22 Total: -11.40 kcal Atomic # 7 Polarization: -93.82 SS G_CDS: -3.71 Total: -97.53 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: -0.05 Total: -25.35 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Atomic # 16 Polarization: -6.48 SS G_CDS: -1.26 Total: -7.74 kcal Total: -62.01 -0.08 -62.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404143831.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.316 kcal (2) G-P(sol) polarization free energy of solvation -62.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds