Wall clock time and date at job start Mon Mar 30 2020 05:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 N 1.46898 * 109.47006 * 239.99936 * 2 1 3 5 5 C 1.46900 * 110.99922 * 85.00294 * 4 2 1 6 6 C 1.50704 * 109.46782 * 179.97438 * 5 4 2 7 7 H 1.08001 * 120.00110 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99603 * 180.02562 * 6 5 4 9 9 N 1.31507 * 120.00325 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99523 * 179.97438 * 8 6 5 11 11 H 1.48488 * 109.47359 * 359.97438 * 10 8 6 12 12 H 1.48504 * 109.46871 * 120.00431 * 10 8 6 13 13 H 1.48503 * 109.46975 * 239.99964 * 10 8 6 14 14 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 15 15 C 1.38275 * 119.93490 * 79.72076 * 14 2 1 16 16 C 1.38128 * 120.06495 * 179.76311 * 15 14 2 17 17 C 1.38817 * 119.93358 * 0.49373 * 16 15 14 18 18 N 1.40250 * 120.06633 * 179.78766 * 17 16 15 19 19 C 1.36111 * 125.94165 * 359.69139 * 18 17 16 20 20 C 1.35370 * 106.05496 * 179.90605 * 19 18 17 21 21 N 1.33778 * 106.53257 * 0.35061 * 20 19 18 22 22 N 1.28606 * 109.06237 * 359.77511 * 21 20 19 23 23 C 1.38824 * 119.87166 * 359.76375 * 17 16 15 24 24 C 1.38123 * 119.93290 * 0.02562 * 23 17 16 25 25 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 26 26 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 28 28 H 1.00899 * 110.99606 * 208.95885 * 4 2 1 29 29 H 1.08996 * 109.46839 * 299.99510 * 5 4 2 30 30 H 1.09003 * 109.47177 * 60.00055 * 5 4 2 31 31 H 0.97005 * 120.00200 * 179.97438 * 9 8 6 32 32 H 1.08003 * 119.96711 * 0.02825 * 15 14 2 33 33 H 1.08000 * 120.03247 * 180.25440 * 16 15 14 34 34 H 1.08006 * 126.97498 * 0.02562 * 19 18 17 35 35 H 1.07992 * 126.73582 * 180.16245 * 20 19 18 36 36 H 1.08002 * 120.03475 * 180.02562 * 23 17 16 37 37 H 1.08005 * 119.96878 * 179.97438 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0825 0.2226 -2.3469 6 6 2.5886 -0.5216 -3.5557 7 1 2.8389 -1.5694 -3.4791 8 6 2.7330 0.1355 -4.7591 9 7 2.4287 1.4115 -4.8523 10 14 3.3609 -0.7868 -6.2573 11 1 3.6303 -2.2004 -5.8914 12 1 2.3376 -0.7395 -7.3325 13 1 4.6146 -0.1532 -6.7391 14 6 2.0323 -0.7104 1.2305 15 6 2.0607 -2.0924 1.2661 16 6 2.5251 -2.7463 2.3907 17 6 2.9540 -2.0147 3.4897 18 7 3.4219 -2.6758 4.6347 19 6 3.5024 -4.0242 4.8019 20 6 4.0068 -4.2181 6.0430 21 7 4.2001 -3.0036 6.5695 22 7 3.8448 -2.1129 5.7124 23 6 2.9194 -0.6273 3.4531 24 6 2.4580 0.0210 2.3241 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 2.9173 -1.1206 -1.0286 29 1 1.0872 0.6163 -2.5525 30 1 2.7590 1.0462 -2.1182 31 1 2.5306 1.8739 -5.6989 32 1 1.7234 -2.6611 0.4121 33 1 2.5509 -3.8256 2.4164 34 1 3.2225 -4.7851 4.0882 35 1 4.2102 -5.1671 6.5166 36 1 3.2528 -0.0556 4.3065 37 1 2.4304 1.1003 2.2951 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411482457.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:13 Heat of formation + Delta-G solvation = 127.804256 kcal Electronic energy + Delta-G solvation = -19519.500497 eV Core-core repulsion = 16492.058534 eV Total energy + Delta-G solvation = -3027.441963 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.60885 -39.77532 -36.54267 -34.38056 -32.77084 -31.85307 -30.84264 -30.53479 -28.64761 -26.25445 -24.58221 -23.91256 -22.37494 -21.85596 -21.29720 -19.99543 -18.85570 -16.85751 -16.66217 -15.73299 -15.65952 -15.40598 -14.82633 -14.62859 -14.30100 -13.88945 -13.68137 -13.51134 -13.03245 -12.79484 -12.36440 -12.08251 -11.73335 -11.62360 -11.52182 -11.34038 -11.17084 -10.99820 -10.85904 -10.66278 -10.46789 -9.96581 -9.70732 -9.26447 -9.21578 -8.57251 -8.55132 -7.47578 -6.10349 -4.12590 0.44237 1.13976 1.81717 2.06839 2.31519 3.26300 3.33973 3.38196 3.53271 4.13739 4.33655 4.36665 4.62608 4.68760 4.79538 4.87185 4.95834 5.17004 5.23162 5.26324 5.29010 5.54437 5.65629 5.78255 5.81681 5.84989 5.98378 6.12219 6.14353 6.30850 6.40989 6.51141 6.61466 6.76357 7.15234 7.31155 7.69809 8.03505 8.22020 8.25349 8.48040 8.96395 9.52780 11.00743 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.031788 B = 0.003254 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.624453 B = 8601.950149 C = 9064.486042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.115 3.885 3 H 0.049 0.951 4 N -0.682 5.682 5 C 0.194 3.806 6 C -0.515 4.515 7 H 0.063 0.937 8 C 0.056 3.944 9 N -0.897 5.897 10 Si 0.899 3.101 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.285 1.285 14 C -0.060 4.060 15 C -0.079 4.079 16 C -0.116 4.116 17 C 0.101 3.899 18 N -0.233 5.233 19 C -0.049 4.049 20 C -0.049 4.049 21 N -0.270 5.270 22 N -0.082 5.082 23 C -0.099 4.099 24 C -0.098 4.098 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.047 0.953 28 H 0.331 0.669 29 H 0.031 0.969 30 H -0.013 1.013 31 H 0.261 0.739 32 H 0.150 0.850 33 H 0.133 0.867 34 H 0.194 0.806 35 H 0.194 0.806 36 H 0.139 0.861 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.813 -8.613 16.620 18.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.005 3.995 3 H 0.066 0.934 4 N -0.313 5.313 5 C 0.067 3.933 6 C -0.554 4.554 7 H 0.081 0.919 8 C -0.145 4.145 9 N -0.536 5.536 10 Si 0.726 3.274 11 H -0.196 1.196 12 H -0.210 1.210 13 H -0.211 1.211 14 C -0.061 4.061 15 C -0.098 4.098 16 C -0.136 4.136 17 C 0.011 3.989 18 N -0.021 5.021 19 C -0.198 4.198 20 C -0.205 4.205 21 N -0.136 5.136 22 N -0.061 5.061 23 C -0.119 4.119 24 C -0.118 4.118 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.148 0.852 29 H 0.049 0.951 30 H 0.005 0.995 31 H 0.071 0.929 32 H 0.167 0.833 33 H 0.150 0.850 34 H 0.211 0.789 35 H 0.211 0.789 36 H 0.157 0.843 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.148 -7.391 17.087 18.652 hybrid contribution 0.910 -0.911 -1.286 1.820 sum -0.238 -8.301 15.801 17.851 Atomic orbital electron populations 1.21752 0.93879 1.02159 1.01140 1.20534 0.96081 0.95492 0.87428 0.93363 1.60873 1.32549 1.34630 1.03257 1.19624 0.96693 0.90184 0.86763 1.21193 1.43413 0.96789 0.93985 0.91892 1.24985 0.95598 0.94895 0.99056 1.69961 1.48730 1.09016 1.25919 0.86434 0.78403 0.79948 0.82576 1.19648 1.20963 1.21085 1.20471 0.95759 0.94107 0.95798 1.21068 0.97250 0.94192 0.97244 1.20903 1.00601 1.00062 0.92082 1.17667 1.04301 0.92306 0.84653 1.44789 1.39914 1.05601 1.11760 1.23863 1.08555 0.85969 1.01389 1.23639 1.04932 0.98370 0.93532 1.75110 1.17204 0.98619 1.22625 1.78351 1.15013 1.22108 0.90586 1.20891 0.99931 0.91452 0.99635 1.21064 0.98099 1.00630 0.91962 0.91722 0.92214 0.93423 0.85212 0.95111 0.99475 0.92893 0.83252 0.84953 0.78945 0.78933 0.84292 0.84628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.93 9.39 37.16 0.35 -1.58 16 2 C 0.11 1.81 2.81 -68.86 -0.19 1.62 16 3 H 0.05 0.80 7.66 -51.93 -0.40 0.41 16 4 N -0.68 -13.17 5.69 -109.22 -0.62 -13.80 16 5 C 0.19 4.78 5.24 -4.97 -0.03 4.75 16 6 C -0.52 -13.99 9.32 -34.44 -0.32 -14.31 16 7 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -26.10 13.29 55.43 0.74 -25.37 16 10 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 11 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 14 C -0.06 -0.79 4.71 -104.59 -0.49 -1.28 16 15 C -0.08 -0.94 9.00 -39.61 -0.36 -1.29 16 16 C -0.12 -1.21 9.46 -39.41 -0.37 -1.58 16 17 C 0.10 1.19 6.68 -83.57 -0.56 0.64 16 18 N -0.23 -2.83 3.56 -10.47 -0.04 -2.86 16 19 C -0.05 -0.46 10.92 -16.68 -0.18 -0.64 16 20 C -0.05 -0.47 12.05 -17.73 -0.21 -0.68 16 21 N -0.27 -3.64 12.39 30.24 0.37 -3.26 16 22 N -0.08 -1.16 12.42 60.35 0.75 -0.41 16 23 C -0.10 -1.17 9.62 -39.41 -0.38 -1.55 16 24 C -0.10 -1.17 9.66 -39.61 -0.38 -1.55 16 25 H 0.06 1.06 7.45 -51.93 -0.39 0.67 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.33 6.20 7.99 -39.29 -0.31 5.88 16 29 H 0.03 0.82 7.44 -51.93 -0.39 0.43 16 30 H -0.01 -0.33 8.06 -51.93 -0.42 -0.75 16 31 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 32 H 0.15 1.79 7.72 -52.48 -0.41 1.38 16 33 H 0.13 1.00 6.77 -52.49 -0.36 0.65 16 34 H 0.19 1.01 7.11 -52.48 -0.37 0.64 16 35 H 0.19 1.10 8.06 -52.49 -0.42 0.67 16 36 H 0.14 1.56 7.69 -52.49 -0.40 1.16 16 37 H 0.14 1.40 8.03 -52.48 -0.42 0.98 16 LS Contribution 318.89 15.07 4.81 4.81 Total: -1.00 -31.37 318.89 -6.91 -38.29 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -4.67 Total: 2.53 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: -3.23 Total: -16.01 kcal Atomic # 7 Polarization: -46.90 SS G_CDS: 1.20 Total: -45.70 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.37 -6.91 -38.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411482457.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.090 kcal (2) G-P(sol) polarization free energy of solvation -31.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds