Wall clock time and date at job start Mon Mar 30 2020 05:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 N 1.46898 * 109.47006 * 239.99936 * 2 1 3 5 5 C 1.46900 * 110.99922 * 85.00294 * 4 2 1 6 6 C 1.50704 * 109.46782 * 179.97438 * 5 4 2 7 7 H 1.08001 * 120.00110 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99603 * 180.02562 * 6 5 4 9 9 N 1.31507 * 120.00325 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99523 * 179.97438 * 8 6 5 11 11 H 1.48488 * 109.47359 * 359.97438 * 10 8 6 12 12 H 1.48504 * 109.46871 * 120.00431 * 10 8 6 13 13 H 1.48503 * 109.46975 * 239.99964 * 10 8 6 14 14 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 15 15 C 1.38275 * 119.93490 * 79.72076 * 14 2 1 16 16 C 1.38128 * 120.06495 * 179.76311 * 15 14 2 17 17 C 1.38817 * 119.93358 * 0.49373 * 16 15 14 18 18 N 1.40250 * 120.06633 * 179.78766 * 17 16 15 19 19 C 1.36111 * 125.94165 * 359.69139 * 18 17 16 20 20 C 1.35370 * 106.05496 * 179.90605 * 19 18 17 21 21 N 1.33778 * 106.53257 * 0.35061 * 20 19 18 22 22 N 1.28606 * 109.06237 * 359.77511 * 21 20 19 23 23 C 1.38824 * 119.87166 * 359.76375 * 17 16 15 24 24 C 1.38123 * 119.93290 * 0.02562 * 23 17 16 25 25 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 26 26 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 28 28 H 1.00899 * 110.99606 * 208.95885 * 4 2 1 29 29 H 1.08996 * 109.46839 * 299.99510 * 5 4 2 30 30 H 1.09003 * 109.47177 * 60.00055 * 5 4 2 31 31 H 0.97005 * 120.00200 * 179.97438 * 9 8 6 32 32 H 1.08003 * 119.96711 * 0.02825 * 15 14 2 33 33 H 1.08000 * 120.03247 * 180.25440 * 16 15 14 34 34 H 1.08006 * 126.97498 * 0.02562 * 19 18 17 35 35 H 1.07992 * 126.73582 * 180.16245 * 20 19 18 36 36 H 1.08002 * 120.03475 * 180.02562 * 23 17 16 37 37 H 1.08005 * 119.96878 * 179.97438 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0825 0.2226 -2.3469 6 6 2.5886 -0.5216 -3.5557 7 1 2.8389 -1.5694 -3.4791 8 6 2.7330 0.1355 -4.7591 9 7 2.4287 1.4115 -4.8523 10 14 3.3609 -0.7868 -6.2573 11 1 3.6303 -2.2004 -5.8914 12 1 2.3376 -0.7395 -7.3325 13 1 4.6146 -0.1532 -6.7391 14 6 2.0323 -0.7104 1.2305 15 6 2.0607 -2.0924 1.2661 16 6 2.5251 -2.7463 2.3907 17 6 2.9540 -2.0147 3.4897 18 7 3.4219 -2.6758 4.6347 19 6 3.5024 -4.0242 4.8019 20 6 4.0068 -4.2181 6.0430 21 7 4.2001 -3.0036 6.5695 22 7 3.8448 -2.1129 5.7124 23 6 2.9194 -0.6273 3.4531 24 6 2.4580 0.0210 2.3241 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 2.9173 -1.1206 -1.0286 29 1 1.0872 0.6163 -2.5525 30 1 2.7590 1.0462 -2.1182 31 1 2.5306 1.8739 -5.6989 32 1 1.7234 -2.6611 0.4121 33 1 2.5509 -3.8256 2.4164 34 1 3.2225 -4.7851 4.0882 35 1 4.2102 -5.1671 6.5166 36 1 3.2528 -0.0556 4.3065 37 1 2.4304 1.1003 2.2951 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411482457.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:13 Heat of formation + Delta-G solvation = 107.705463 kcal Electronic energy + Delta-G solvation = -19520.372047 eV Core-core repulsion = 16492.058534 eV Total energy + Delta-G solvation = -3028.313512 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.43628 -40.74926 -37.85634 -35.62200 -34.56323 -32.68965 -32.02233 -31.66830 -29.75758 -28.10600 -25.66012 -24.80038 -23.94196 -22.81185 -22.42145 -21.20156 -19.68406 -18.70578 -17.51717 -17.12535 -16.81696 -16.41545 -16.26229 -15.74756 -15.39972 -15.01090 -14.88429 -14.44930 -14.37281 -14.22644 -13.75180 -13.48986 -13.04242 -12.96079 -12.91558 -12.71208 -12.42046 -12.24058 -12.06505 -11.96473 -11.90180 -11.68648 -11.24409 -10.65753 -10.48267 -10.10657 -9.52883 -9.15719 -8.21590 -6.31996 -0.44404 0.24899 0.96513 1.26171 1.42468 1.43248 1.52864 1.56506 2.40729 2.61113 3.12735 3.39217 3.45179 3.60041 3.68943 3.80471 4.06481 4.19450 4.27244 4.29128 4.41982 4.49271 4.53457 4.68090 4.85453 4.93906 4.98239 5.08019 5.15067 5.15589 5.29277 5.31081 5.36498 5.50420 5.54788 5.66876 5.87734 6.04685 6.44099 6.71982 6.90423 7.37952 7.39096 8.90145 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.031788 B = 0.003254 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.624453 B = 8601.950149 C = 9064.486042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.116 3.884 3 H 0.035 0.965 4 N -0.674 5.674 5 C 0.209 3.791 6 C -0.532 4.532 7 H 0.067 0.933 8 C 0.001 3.999 9 N -0.935 5.935 10 Si 0.970 3.030 11 H -0.260 1.260 12 H -0.280 1.280 13 H -0.281 1.281 14 C -0.072 4.072 15 C -0.080 4.080 16 C -0.102 4.102 17 C 0.097 3.903 18 N -0.242 5.242 19 C -0.039 4.039 20 C -0.052 4.052 21 N -0.302 5.302 22 N -0.124 5.124 23 C -0.106 4.106 24 C -0.097 4.097 25 H 0.039 0.961 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.335 0.665 29 H 0.005 0.995 30 H -0.041 1.041 31 H 0.264 0.736 32 H 0.151 0.849 33 H 0.169 0.831 34 H 0.237 0.763 35 H 0.230 0.770 36 H 0.139 0.861 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.567 -11.375 16.931 20.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.006 3.994 3 H 0.053 0.947 4 N -0.305 5.305 5 C 0.082 3.918 6 C -0.570 4.570 7 H 0.085 0.915 8 C -0.197 4.197 9 N -0.575 5.575 10 Si 0.795 3.205 11 H -0.184 1.184 12 H -0.206 1.206 13 H -0.207 1.207 14 C -0.073 4.073 15 C -0.099 4.099 16 C -0.122 4.122 17 C 0.006 3.994 18 N -0.030 5.030 19 C -0.187 4.187 20 C -0.208 4.208 21 N -0.167 5.167 22 N -0.102 5.102 23 C -0.126 4.126 24 C -0.116 4.116 25 H 0.058 0.942 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.153 0.847 29 H 0.023 0.977 30 H -0.024 1.024 31 H 0.073 0.927 32 H 0.169 0.831 33 H 0.186 0.814 34 H 0.253 0.747 35 H 0.246 0.754 36 H 0.157 0.843 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -0.901 -10.152 17.433 20.194 hybrid contribution 0.828 -0.109 -1.273 1.522 sum -0.074 -10.260 16.160 19.142 Atomic orbital electron populations 1.21708 0.93046 1.02572 1.01097 1.20514 0.96729 0.94875 0.87295 0.94720 1.60729 1.32736 1.33580 1.03451 1.19237 0.94197 0.89962 0.88437 1.21587 1.43269 0.97141 0.95007 0.91452 1.25926 0.95725 0.95713 1.02381 1.70091 1.49875 1.10712 1.26857 0.85316 0.77722 0.79024 0.78430 1.18387 1.20572 1.20667 1.20193 0.97497 0.94758 0.94875 1.21097 0.97357 0.93535 0.97904 1.21141 0.98801 1.01696 0.90553 1.17862 1.04007 0.92439 0.85058 1.44920 1.39938 1.06728 1.11368 1.24657 1.06668 0.85436 1.01934 1.24355 1.04068 0.98523 0.93837 1.75061 1.17995 1.00227 1.23420 1.78336 1.17178 1.23049 0.91618 1.20949 1.00083 0.92032 0.99522 1.21099 0.97763 1.01150 0.91631 0.94212 0.91520 0.90980 0.84690 0.97695 1.02383 0.92714 0.83135 0.81392 0.74713 0.75389 0.84336 0.83782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.70 9.39 71.98 0.68 -3.02 16 2 C 0.12 3.67 2.81 44.17 0.12 3.80 16 3 H 0.03 1.20 7.66 -2.39 -0.02 1.18 16 4 N -0.67 -26.27 5.69 -499.45 -2.84 -29.11 16 5 C 0.21 10.68 5.24 85.56 0.45 11.12 16 6 C -0.53 -29.15 9.32 25.60 0.24 -28.91 16 7 H 0.07 3.55 7.81 -2.91 -0.02 3.53 16 8 C 0.00 0.04 5.46 84.66 0.46 0.50 16 9 N -0.93 -55.46 13.29 21.45 0.28 -55.18 16 10 Si 0.97 43.13 29.54 68.60 2.03 45.16 16 11 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 12 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 13 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 14 C -0.07 -1.82 4.71 -19.85 -0.09 -1.91 16 15 C -0.08 -1.73 9.00 22.25 0.20 -1.53 16 16 C -0.10 -1.79 9.46 22.38 0.21 -1.58 16 17 C 0.10 2.08 6.68 38.07 0.25 2.34 16 18 N -0.24 -5.36 3.56 -187.04 -0.67 -6.02 16 19 C -0.04 -0.58 10.92 83.37 0.91 0.33 16 20 C -0.05 -0.85 12.05 83.73 1.01 0.16 16 21 N -0.30 -7.82 12.39 -58.25 -0.72 -8.54 16 22 N -0.12 -3.42 12.42 37.02 0.46 -2.96 16 23 C -0.11 -2.41 9.62 22.38 0.22 -2.19 16 24 C -0.10 -2.24 9.66 22.25 0.21 -2.03 16 25 H 0.04 1.34 7.45 -2.39 -0.02 1.32 16 26 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.34 12.50 7.99 -89.69 -0.72 11.79 16 29 H 0.00 0.28 7.44 -2.39 -0.02 0.26 16 30 H -0.04 -2.31 8.06 -2.39 -0.02 -2.33 16 31 H 0.26 14.71 8.31 -92.70 -0.77 13.94 16 32 H 0.15 3.25 7.72 -2.91 -0.02 3.23 16 33 H 0.17 1.69 6.77 -2.91 -0.02 1.67 16 34 H 0.24 1.14 7.11 -2.91 -0.02 1.12 16 35 H 0.23 1.74 8.06 -2.91 -0.02 1.71 16 36 H 0.14 3.12 7.69 -2.91 -0.02 3.10 16 37 H 0.14 2.95 8.03 -2.91 -0.02 2.93 16 Total: -1.00 -69.67 318.89 3.78 -65.89 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 0.37 Total: 13.69 kcal Atomic # 6 Polarization: -27.80 SS G_CDS: 4.87 Total: -22.93 kcal Atomic # 7 Polarization: -98.33 SS G_CDS: -3.48 Total: -101.81 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -69.67 3.78 -65.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411482457.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.593 kcal (2) G-P(sol) polarization free energy of solvation -69.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds