Wall clock time and date at job start Mon Mar 30 2020 05:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47115 * 2 1 4 4 N 1.46903 * 109.47225 * 119.99896 * 2 1 3 5 5 C 1.46906 * 110.99725 * 275.00141 * 4 2 1 6 6 C 1.50694 * 109.46924 * 180.02562 * 5 4 2 7 7 H 1.08000 * 120.00539 * 359.97438 * 6 5 4 8 8 C 1.37881 * 120.00073 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99699 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99961 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47288 * 89.99947 * 10 8 6 12 12 H 1.48500 * 109.46820 * 209.99927 * 10 8 6 13 13 H 1.48496 * 109.47108 * 329.99377 * 10 8 6 14 14 C 1.50699 * 109.47191 * 239.99878 * 2 1 3 15 15 C 1.35365 * 126.73212 * 84.97312 * 14 2 1 16 16 N 1.36116 * 106.05246 * 180.02562 * 15 14 2 17 17 C 1.40241 * 125.94387 * 180.02562 * 16 15 14 18 18 C 1.38819 * 120.06933 * 359.71678 * 17 16 15 19 19 C 1.38125 * 119.93923 * 179.75536 * 18 17 16 20 20 C 1.38273 * 120.06024 * 0.54358 * 19 18 17 21 21 C 1.38274 * 120.13339 * 359.71203 * 20 19 18 22 22 C 1.38123 * 120.06669 * 0.02562 * 21 20 19 23 23 N 1.28730 * 108.11288 * 359.97438 * 16 15 14 24 24 N 1.28608 * 110.23626 * 0.02562 * 23 16 15 25 25 H 1.08998 * 109.47194 * 300.00233 * 1 2 3 26 26 H 1.08995 * 109.47087 * 60.00292 * 1 2 3 27 27 H 1.09001 * 109.47192 * 180.02562 * 1 2 3 28 28 H 1.00895 * 111.00311 * 151.04730 * 4 2 1 29 29 H 1.08995 * 109.46867 * 299.99959 * 5 4 2 30 30 H 1.08998 * 109.47094 * 59.99840 * 5 4 2 31 31 H 0.97006 * 119.99751 * 179.97438 * 9 8 6 32 32 H 1.08002 * 126.97476 * 359.97438 * 15 14 2 33 33 H 1.08000 * 120.02829 * 0.02562 * 18 17 16 34 34 H 1.07997 * 119.96572 * 180.27582 * 19 18 17 35 35 H 1.08006 * 119.93391 * 179.72529 * 20 19 18 36 36 H 1.08004 * 119.96551 * 180.02562 * 21 20 19 37 37 H 1.07993 * 120.03512 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0825 0.2227 2.3469 6 6 2.5885 -0.5213 3.5557 7 1 2.8382 -1.5693 3.4795 8 6 2.7329 0.1358 4.7592 9 7 2.4294 1.4121 4.8520 10 14 3.3609 -0.7863 6.2575 11 1 4.8418 -0.6921 6.3119 12 1 2.7812 -0.1871 7.4863 13 1 2.9586 -2.2128 6.1652 14 6 2.0324 -0.7104 -1.2304 15 6 2.2126 -0.1720 -2.4593 16 7 2.6763 -1.1802 -3.2476 17 6 3.0032 -1.0779 -4.6075 18 6 2.8573 0.1340 -5.2687 19 6 3.1849 0.2330 -6.6069 20 6 3.6471 -0.8764 -7.2907 21 6 3.7884 -2.0862 -6.6362 22 6 3.4676 -2.1899 -5.2967 23 7 2.7635 -2.2436 -2.5274 24 7 2.3874 -1.9969 -1.3225 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 2.9173 -1.1205 1.0288 29 1 2.7588 1.0463 2.1182 30 1 1.0871 0.6164 2.5525 31 1 2.5306 1.8744 5.6988 32 1 2.0256 0.8499 -2.7545 33 1 2.4922 0.9997 -4.7361 34 1 3.0759 1.1767 -7.1206 35 1 3.8985 -0.7978 -8.3382 36 1 4.1501 -2.9509 -7.1728 37 1 3.5785 -3.1349 -4.7859 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411530198.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:01 Heat of formation + Delta-G solvation = 131.458945 kcal Electronic energy + Delta-G solvation = -19493.643266 eV Core-core repulsion = 16466.359782 eV Total energy + Delta-G solvation = -3027.283484 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.39703 -39.62043 -36.41702 -34.48697 -32.85527 -31.77251 -30.90488 -30.05729 -28.97802 -26.14204 -24.41867 -24.09031 -22.62644 -21.60794 -21.20071 -19.96947 -18.44571 -16.74480 -16.49988 -16.33158 -15.49741 -15.32187 -14.77863 -14.65356 -14.25692 -14.08892 -13.92056 -13.47005 -12.94320 -12.35217 -12.21701 -12.13804 -11.71070 -11.53935 -11.50949 -11.39584 -10.93817 -10.85052 -10.82794 -10.55324 -10.40431 -9.83857 -9.53467 -9.27866 -9.07895 -8.78638 -8.42778 -7.22948 -5.98213 -3.98886 0.34859 0.81696 1.86443 2.16803 2.65092 3.29425 3.36969 3.42498 3.48743 4.12624 4.29525 4.43178 4.48287 4.60657 4.74216 4.83508 4.94199 5.01228 5.13204 5.32315 5.38217 5.48436 5.55684 5.67780 5.81053 5.90455 5.95781 6.01376 6.13596 6.24177 6.32953 6.46675 6.73157 6.75978 7.28853 7.46249 7.85843 8.17611 8.48073 8.52823 8.70144 9.11023 9.65746 11.13104 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.039022 B = 0.003129 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.374340 B = 8947.797595 C = 9189.781108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.165 3.835 3 H 0.054 0.946 4 N -0.675 5.675 5 C 0.193 3.807 6 C -0.511 4.511 7 H 0.063 0.937 8 C 0.055 3.945 9 N -0.900 5.900 10 Si 0.899 3.101 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.272 1.272 14 C 0.004 3.996 15 C -0.055 4.055 16 N -0.252 5.252 17 C 0.133 3.867 18 C -0.122 4.122 19 C -0.098 4.098 20 C -0.118 4.118 21 C -0.100 4.100 22 C -0.105 4.105 23 N -0.087 5.087 24 N -0.230 5.230 25 H 0.067 0.933 26 H 0.045 0.955 27 H 0.060 0.940 28 H 0.337 0.663 29 H -0.014 1.014 30 H 0.031 0.969 31 H 0.260 0.740 32 H 0.191 0.809 33 H 0.135 0.865 34 H 0.136 0.864 35 H 0.131 0.869 36 H 0.136 0.864 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.742 -0.492 -26.266 26.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.053 3.947 3 H 0.071 0.929 4 N -0.307 5.307 5 C 0.067 3.933 6 C -0.549 4.549 7 H 0.082 0.918 8 C -0.146 4.146 9 N -0.540 5.540 10 Si 0.727 3.273 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.197 1.197 14 C -0.132 4.132 15 C -0.202 4.202 16 N -0.039 5.039 17 C 0.041 3.959 18 C -0.143 4.143 19 C -0.117 4.117 20 C -0.137 4.137 21 C -0.118 4.118 22 C -0.125 4.125 23 N -0.064 5.064 24 N -0.097 5.097 25 H 0.086 0.914 26 H 0.064 0.936 27 H 0.079 0.921 28 H 0.155 0.845 29 H 0.003 0.997 30 H 0.049 0.951 31 H 0.070 0.930 32 H 0.208 0.792 33 H 0.153 0.847 34 H 0.154 0.846 35 H 0.149 0.851 36 H 0.153 0.847 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 0.473 -2.096 -25.847 25.936 hybrid contribution 0.848 1.379 0.525 1.701 sum 1.321 -0.717 -25.322 25.367 Atomic orbital electron populations 1.21753 0.93812 1.02390 1.00980 1.19863 0.95733 0.94043 0.85099 0.92868 1.60676 1.33492 1.33933 1.02648 1.19641 0.96552 0.90142 0.86975 1.21202 1.42892 0.96877 0.93947 0.91830 1.24977 0.95723 0.94910 0.98985 1.69964 1.49133 1.09008 1.25880 0.86482 0.78779 0.80097 0.81988 1.20792 1.21295 1.19694 1.22410 1.03178 0.91588 0.96035 1.23451 1.08383 0.96789 0.91597 1.44664 1.42637 1.08324 1.08314 1.17725 1.02448 0.96182 0.79540 1.20970 1.01938 0.95812 0.95549 1.21038 0.98171 0.99365 0.93131 1.21340 0.99037 0.92777 1.00520 1.21125 0.98862 0.98378 0.93458 1.21050 0.98634 0.98056 0.94755 1.78376 1.19967 1.09714 0.98366 1.75169 1.12166 1.14521 1.07869 0.91388 0.93635 0.92055 0.84507 0.99668 0.95108 0.92996 0.79180 0.84697 0.84645 0.85111 0.84650 0.83925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 9.40 37.16 0.35 -1.85 16 2 C 0.17 3.05 3.10 -68.86 -0.21 2.84 16 3 H 0.05 0.96 7.80 -51.93 -0.40 0.55 16 4 N -0.68 -15.43 6.21 -109.22 -0.68 -16.11 16 5 C 0.19 5.16 5.24 -4.98 -0.03 5.13 16 6 C -0.51 -14.90 9.32 -34.44 -0.32 -15.22 16 7 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 9 N -0.90 -27.18 13.29 55.43 0.74 -26.45 16 10 Si 0.90 22.26 29.54 -169.99 -5.02 17.24 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 14 C 0.00 0.07 5.93 -82.77 -0.49 -0.42 16 15 C -0.05 -0.75 10.85 -16.68 -0.18 -0.93 16 16 N -0.25 -3.53 3.56 -10.47 -0.04 -3.57 16 17 C 0.13 1.45 6.68 -83.58 -0.56 0.90 16 18 C -0.12 -1.00 9.46 -39.41 -0.37 -1.37 16 19 C -0.10 -0.61 10.04 -39.61 -0.40 -1.01 16 20 C -0.12 -0.69 10.04 -39.56 -0.40 -1.08 16 21 C -0.10 -0.68 10.04 -39.61 -0.40 -1.08 16 22 C -0.10 -1.01 9.62 -39.41 -0.38 -1.39 16 23 N -0.09 -1.47 12.42 60.35 0.75 -0.72 16 24 N -0.23 -4.39 11.95 33.29 0.40 -3.99 16 25 H 0.07 1.21 7.45 -51.93 -0.39 0.82 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.34 7.84 8.08 -39.29 -0.32 7.52 16 29 H -0.01 -0.40 8.05 -51.93 -0.42 -0.82 16 30 H 0.03 0.86 7.44 -51.93 -0.39 0.48 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.19 1.78 7.11 -52.49 -0.37 1.41 16 33 H 0.14 0.88 6.77 -52.49 -0.36 0.52 16 34 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 35 H 0.13 0.43 8.06 -52.48 -0.42 0.01 16 36 H 0.14 0.60 8.06 -52.48 -0.42 0.18 16 37 H 0.14 1.43 7.69 -52.49 -0.40 1.03 16 LS Contribution 320.42 15.07 4.83 4.83 Total: -1.00 -33.72 320.42 -7.21 -40.94 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -4.70 Total: 1.80 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: -3.48 Total: -13.97 kcal Atomic # 7 Polarization: -52.00 SS G_CDS: 1.17 Total: -50.83 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.72 -7.21 -40.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411530198.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.396 kcal (2) G-P(sol) polarization free energy of solvation -33.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds