Wall clock time and date at job start Mon Mar 30 2020 05:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47115 * 2 1 4 4 N 1.46903 * 109.47225 * 119.99896 * 2 1 3 5 5 C 1.46906 * 110.99725 * 275.00141 * 4 2 1 6 6 C 1.50694 * 109.46924 * 180.02562 * 5 4 2 7 7 H 1.08000 * 120.00539 * 359.97438 * 6 5 4 8 8 C 1.37881 * 120.00073 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99699 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99961 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47288 * 89.99947 * 10 8 6 12 12 H 1.48500 * 109.46820 * 209.99927 * 10 8 6 13 13 H 1.48496 * 109.47108 * 329.99377 * 10 8 6 14 14 C 1.50699 * 109.47191 * 239.99878 * 2 1 3 15 15 C 1.35365 * 126.73212 * 84.97312 * 14 2 1 16 16 N 1.36116 * 106.05246 * 180.02562 * 15 14 2 17 17 C 1.40241 * 125.94387 * 180.02562 * 16 15 14 18 18 C 1.38819 * 120.06933 * 359.71678 * 17 16 15 19 19 C 1.38125 * 119.93923 * 179.75536 * 18 17 16 20 20 C 1.38273 * 120.06024 * 0.54358 * 19 18 17 21 21 C 1.38274 * 120.13339 * 359.71203 * 20 19 18 22 22 C 1.38123 * 120.06669 * 0.02562 * 21 20 19 23 23 N 1.28730 * 108.11288 * 359.97438 * 16 15 14 24 24 N 1.28608 * 110.23626 * 0.02562 * 23 16 15 25 25 H 1.08998 * 109.47194 * 300.00233 * 1 2 3 26 26 H 1.08995 * 109.47087 * 60.00292 * 1 2 3 27 27 H 1.09001 * 109.47192 * 180.02562 * 1 2 3 28 28 H 1.00895 * 111.00311 * 151.04730 * 4 2 1 29 29 H 1.08995 * 109.46867 * 299.99959 * 5 4 2 30 30 H 1.08998 * 109.47094 * 59.99840 * 5 4 2 31 31 H 0.97006 * 119.99751 * 179.97438 * 9 8 6 32 32 H 1.08002 * 126.97476 * 359.97438 * 15 14 2 33 33 H 1.08000 * 120.02829 * 0.02562 * 18 17 16 34 34 H 1.07997 * 119.96572 * 180.27582 * 19 18 17 35 35 H 1.08006 * 119.93391 * 179.72529 * 20 19 18 36 36 H 1.08004 * 119.96551 * 180.02562 * 21 20 19 37 37 H 1.07993 * 120.03512 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0825 0.2227 2.3469 6 6 2.5885 -0.5213 3.5557 7 1 2.8382 -1.5693 3.4795 8 6 2.7329 0.1358 4.7592 9 7 2.4294 1.4121 4.8520 10 14 3.3609 -0.7863 6.2575 11 1 4.8418 -0.6921 6.3119 12 1 2.7812 -0.1871 7.4863 13 1 2.9586 -2.2128 6.1652 14 6 2.0324 -0.7104 -1.2304 15 6 2.2126 -0.1720 -2.4593 16 7 2.6763 -1.1802 -3.2476 17 6 3.0032 -1.0779 -4.6075 18 6 2.8573 0.1340 -5.2687 19 6 3.1849 0.2330 -6.6069 20 6 3.6471 -0.8764 -7.2907 21 6 3.7884 -2.0862 -6.6362 22 6 3.4676 -2.1899 -5.2967 23 7 2.7635 -2.2436 -2.5274 24 7 2.3874 -1.9969 -1.3225 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 2.9173 -1.1205 1.0288 29 1 2.7588 1.0463 2.1182 30 1 1.0871 0.6164 2.5525 31 1 2.5306 1.8744 5.6988 32 1 2.0256 0.8499 -2.7545 33 1 2.4922 0.9997 -4.7361 34 1 3.0759 1.1767 -7.1206 35 1 3.8985 -0.7978 -8.3382 36 1 4.1501 -2.9509 -7.1728 37 1 3.5785 -3.1349 -4.7859 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411530198.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:01 Heat of formation + Delta-G solvation = 108.434878 kcal Electronic energy + Delta-G solvation = -19494.641664 eV Core-core repulsion = 16466.359782 eV Total energy + Delta-G solvation = -3028.281882 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.53955 -40.25825 -38.00187 -35.61485 -34.82208 -32.86369 -32.02608 -30.88710 -30.37008 -28.12626 -25.37806 -25.31079 -23.86830 -22.91795 -22.38468 -21.16216 -19.48429 -18.51222 -17.62632 -17.24765 -16.81960 -16.48146 -16.19779 -15.97865 -15.51810 -15.14737 -14.82372 -14.47812 -14.28533 -14.08690 -13.63672 -13.32331 -13.10673 -13.00607 -12.79351 -12.69039 -12.47539 -12.17039 -12.13518 -11.97114 -11.90659 -11.82038 -11.29461 -10.65317 -10.36193 -10.08777 -9.60803 -9.09767 -8.21891 -6.31603 -0.42431 0.26996 0.95669 1.24092 1.37434 1.40691 1.42212 1.54593 2.40940 2.70217 3.10853 3.12178 3.33519 3.64405 3.74643 3.88582 4.12158 4.14181 4.22784 4.26513 4.35682 4.45583 4.52871 4.67211 4.78181 4.91042 4.96850 5.02785 5.14648 5.28838 5.30043 5.31922 5.36437 5.44550 5.59028 5.64345 5.92876 6.05116 6.47499 6.70097 6.88012 7.36654 7.38560 8.89637 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.039022 B = 0.003129 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.374340 B = 8947.797595 C = 9189.781108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.165 3.835 3 H 0.061 0.939 4 N -0.681 5.681 5 C 0.211 3.789 6 C -0.538 4.538 7 H 0.056 0.944 8 C 0.005 3.995 9 N -0.930 5.930 10 Si 0.970 3.030 11 H -0.272 1.272 12 H -0.277 1.277 13 H -0.269 1.269 14 C -0.022 4.022 15 C -0.032 4.032 16 N -0.239 5.239 17 C 0.087 3.913 18 C -0.120 4.120 19 C -0.096 4.096 20 C -0.105 4.105 21 C -0.102 4.102 22 C -0.122 4.122 23 N -0.112 5.112 24 N -0.277 5.277 25 H 0.051 0.949 26 H 0.084 0.916 27 H 0.046 0.954 28 H 0.332 0.668 29 H -0.036 1.036 30 H 0.012 0.988 31 H 0.266 0.734 32 H 0.236 0.764 33 H 0.153 0.847 34 H 0.169 0.831 35 H 0.165 0.835 36 H 0.158 0.842 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.142 0.547 -28.857 28.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.053 3.947 3 H 0.079 0.921 4 N -0.312 5.312 5 C 0.084 3.916 6 C -0.576 4.576 7 H 0.075 0.925 8 C -0.193 4.193 9 N -0.571 5.571 10 Si 0.794 3.206 11 H -0.197 1.197 12 H -0.202 1.202 13 H -0.194 1.194 14 C -0.160 4.160 15 C -0.180 4.180 16 N -0.026 5.026 17 C -0.003 4.003 18 C -0.141 4.141 19 C -0.114 4.114 20 C -0.123 4.123 21 C -0.120 4.120 22 C -0.142 4.142 23 N -0.089 5.089 24 N -0.143 5.143 25 H 0.070 0.930 26 H 0.103 0.897 27 H 0.065 0.935 28 H 0.149 0.851 29 H -0.018 1.018 30 H 0.030 0.970 31 H 0.075 0.925 32 H 0.252 0.748 33 H 0.171 0.829 34 H 0.186 0.814 35 H 0.182 0.818 36 H 0.176 0.824 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.878 -1.084 -28.480 28.514 hybrid contribution 0.750 1.105 1.057 1.703 sum 1.628 0.021 -27.423 27.471 Atomic orbital electron populations 1.21699 0.92593 1.01769 1.02103 1.19884 0.96616 0.94092 0.84072 0.92139 1.60568 1.33130 1.33729 1.03786 1.19271 0.94535 0.89788 0.88025 1.21529 1.43744 0.96860 0.95457 0.92535 1.25873 0.95574 0.95809 1.02081 1.70068 1.49602 1.10416 1.26973 0.85377 0.78507 0.78690 0.77998 1.19747 1.20249 1.19361 1.22219 1.05428 0.91555 0.96801 1.23959 1.05862 0.98110 0.90097 1.44902 1.40798 1.07536 1.09384 1.18191 1.05695 0.98089 0.78301 1.21293 1.01237 0.95073 0.96481 1.21495 0.96750 1.00883 0.92271 1.21820 0.96659 0.91864 1.01998 1.21435 0.98265 1.00031 0.92271 1.21140 0.99615 0.97359 0.96132 1.78279 1.21350 1.11147 0.98173 1.75087 1.13986 1.15969 1.09253 0.92958 0.89700 0.93501 0.85093 1.01814 0.97019 0.92528 0.74758 0.82939 0.81357 0.81754 0.82442 0.85644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.15 9.40 71.98 0.68 -3.48 16 2 C 0.17 6.22 3.10 44.17 0.14 6.36 16 3 H 0.06 2.19 7.80 -2.39 -0.02 2.17 16 4 N -0.68 -32.45 6.21 -499.46 -3.10 -35.56 16 5 C 0.21 11.74 5.24 85.55 0.45 12.19 16 6 C -0.54 -32.28 9.32 25.60 0.24 -32.04 16 7 H 0.06 3.39 7.81 -2.91 -0.02 3.37 16 8 C 0.01 0.30 5.46 84.66 0.46 0.76 16 9 N -0.93 -56.94 13.29 21.45 0.28 -56.66 16 10 Si 0.97 46.03 29.54 68.60 2.03 48.05 16 11 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 12 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 13 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 14 C -0.02 -0.77 5.93 41.60 0.25 -0.52 16 15 C -0.03 -0.82 10.85 83.36 0.90 0.08 16 16 N -0.24 -6.63 3.56 -187.05 -0.67 -7.29 16 17 C 0.09 1.82 6.68 38.08 0.25 2.07 16 18 C -0.12 -1.60 9.46 22.38 0.21 -1.39 16 19 C -0.10 -0.77 10.04 22.25 0.22 -0.54 16 20 C -0.11 -0.78 10.04 22.29 0.22 -0.56 16 21 C -0.10 -1.15 10.04 22.25 0.22 -0.93 16 22 C -0.12 -2.30 9.62 22.38 0.22 -2.09 16 23 N -0.11 -3.96 12.42 37.02 0.46 -3.50 16 24 N -0.28 -11.01 11.95 -48.59 -0.58 -11.59 16 25 H 0.05 1.89 7.45 -2.39 -0.02 1.88 16 26 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.33 16.25 8.08 -89.70 -0.72 15.53 16 29 H -0.04 -2.09 8.05 -2.39 -0.02 -2.11 16 30 H 0.01 0.69 7.44 -2.39 -0.02 0.67 16 31 H 0.27 15.19 8.31 -92.70 -0.77 14.42 16 32 H 0.24 3.58 7.11 -2.91 -0.02 3.56 16 33 H 0.15 1.38 6.77 -2.91 -0.02 1.36 16 34 H 0.17 0.27 8.06 -2.91 -0.02 0.25 16 35 H 0.16 0.16 8.06 -2.91 -0.02 0.14 16 36 H 0.16 0.99 8.06 -2.91 -0.02 0.96 16 37 H 0.13 2.69 7.69 -2.91 -0.02 2.67 16 Total: -1.00 -76.71 320.42 3.24 -73.47 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: 0.36 Total: 13.16 kcal Atomic # 6 Polarization: -24.55 SS G_CDS: 4.47 Total: -20.09 kcal Atomic # 7 Polarization: -110.99 SS G_CDS: -3.61 Total: -114.59 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.05 kcal Total: -76.71 3.24 -73.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411530198.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.903 kcal (2) G-P(sol) polarization free energy of solvation -76.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds