Wall clock time and date at job start Mon Mar 30 2020 05:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46907 * 110.99587 * 2 1 4 4 C 1.50706 * 109.46807 * 66.04732 * 3 2 1 5 5 H 1.07995 * 119.99955 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99649 * 179.97438 * 4 3 2 7 7 N 1.31509 * 120.00214 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99960 * 180.02562 * 6 4 3 9 9 H 1.48493 * 109.47352 * 89.99601 * 8 6 4 10 10 H 1.48496 * 109.47265 * 210.00209 * 8 6 4 11 11 H 1.48509 * 109.46877 * 329.99791 * 8 6 4 12 12 C 1.46900 * 111.00479 * 236.05085 * 2 1 3 13 13 C 1.50704 * 109.46712 * 293.95421 * 12 2 1 14 14 C 1.35369 * 126.73105 * 95.31096 * 13 12 2 15 15 N 1.36116 * 106.04609 * 180.12205 * 14 13 12 16 16 C 1.40254 * 125.94381 * 179.84825 * 15 14 13 17 17 C 1.38817 * 120.06733 * 179.72049 * 16 15 14 18 18 C 1.38120 * 119.93447 * 179.97438 * 17 16 15 19 19 C 1.38285 * 120.06636 * 359.97353 * 18 17 16 20 20 C 1.38280 * 120.12709 * 0.02562 * 19 18 17 21 21 C 1.38128 * 120.06481 * 359.97438 * 20 19 18 22 22 N 1.28733 * 108.12004 * 359.58477 * 15 14 13 23 23 N 1.28610 * 110.22744 * 0.26647 * 22 15 14 24 24 H 1.09006 * 109.46722 * 183.94948 * 1 2 3 25 25 H 1.08992 * 109.47535 * 303.95062 * 1 2 3 26 26 H 1.09007 * 109.47350 * 63.95622 * 1 2 3 27 27 H 1.09000 * 109.46939 * 186.04627 * 3 2 1 28 28 H 1.08996 * 109.47282 * 306.04372 * 3 2 1 29 29 H 0.97004 * 120.00670 * 179.97438 * 7 6 4 30 30 H 1.08994 * 109.47328 * 173.95512 * 12 2 1 31 31 H 1.08998 * 109.46987 * 53.94858 * 12 2 1 32 32 H 1.07997 * 126.97969 * 359.97438 * 14 13 12 33 33 H 1.08001 * 120.03536 * 359.94908 * 17 16 15 34 34 H 1.08000 * 119.97110 * 179.97438 * 18 17 16 35 35 H 1.07994 * 119.93476 * 179.74806 * 19 18 17 36 36 H 1.07996 * 119.96164 * 180.02562 * 20 19 18 37 37 H 1.07998 * 120.02482 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0471 1.2985 5 1 1.0738 1.5114 2.0485 6 6 2.0274 3.3492 1.5290 7 7 2.7134 4.0013 0.6159 8 14 1.5836 4.1864 3.1388 9 1 2.6604 3.9493 4.1334 10 1 1.4317 5.6461 2.9121 11 1 0.3056 3.6294 3.6505 12 6 1.9956 -0.7659 -1.1376 13 6 1.6370 -2.2203 -0.9729 14 6 0.5694 -2.8568 -1.5093 15 7 0.6527 -4.1494 -1.0910 16 6 -0.2503 -5.1758 -1.4041 17 6 -0.0433 -6.4578 -0.9136 18 6 -0.9346 -7.4665 -1.2232 19 6 -2.0327 -7.2002 -2.0204 20 6 -2.2415 -5.9241 -2.5104 21 6 -1.3535 -4.9113 -2.2041 22 7 1.7076 -4.2672 -0.3626 23 7 2.3148 -3.1370 -0.2731 24 1 -0.3633 -1.0253 0.0708 25 1 -0.3634 0.5739 0.8524 26 1 -0.3634 0.4512 -0.9234 27 1 3.0796 1.3445 -0.1082 28 1 1.5610 1.9274 -0.8309 29 1 2.9879 4.9175 0.7778 30 1 3.0798 -0.6610 -1.1756 31 1 1.5612 -0.3871 -2.0628 32 1 -0.1948 -2.4258 -2.1391 33 1 0.8141 -6.6665 -0.2909 34 1 -0.7739 -8.4642 -0.8422 35 1 -2.7260 -7.9914 -2.2645 36 1 -3.1001 -5.7190 -3.1325 37 1 -1.5169 -3.9150 -2.5875 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000505351637.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:45 Heat of formation + Delta-G solvation = 140.696368 kcal Electronic energy + Delta-G solvation = -19648.323983 eV Core-core repulsion = 16621.441064 eV Total energy + Delta-G solvation = -3026.882919 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.34132 -39.58241 -36.71857 -34.63333 -32.70767 -31.80414 -30.97919 -30.05804 -27.40855 -26.86392 -24.39693 -24.19302 -23.03152 -21.48350 -21.01614 -20.10395 -18.44941 -16.63279 -16.50149 -16.30369 -15.49315 -15.24437 -14.85200 -14.55967 -14.19820 -13.99685 -13.91152 -13.68837 -13.27363 -12.56359 -12.24243 -11.94378 -11.75556 -11.55437 -11.36436 -11.23679 -10.96204 -10.89357 -10.64552 -10.54061 -10.48475 -9.86588 -9.50552 -9.27050 -9.15329 -8.77269 -8.40660 -7.25271 -6.00385 -4.01246 0.38474 0.84609 1.90681 2.21239 2.68680 3.32526 3.35126 3.40812 3.44519 4.16974 4.33319 4.45164 4.48120 4.63930 4.79440 4.86465 5.00091 5.07566 5.16171 5.31943 5.36488 5.37440 5.53373 5.81485 5.85641 5.98315 6.02461 6.11456 6.16343 6.26960 6.28837 6.39816 6.72545 6.77330 7.28370 7.32178 7.81285 8.08548 8.19240 8.54274 8.59413 9.05974 9.62667 11.10564 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.038164 B = 0.003247 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.505444 B = 8622.217997 C = 8761.991547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.534 5.534 3 C 0.194 3.806 4 C -0.506 4.506 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.274 1.274 12 C 0.134 3.866 13 C 0.020 3.980 14 C -0.053 4.053 15 N -0.252 5.252 16 C 0.134 3.866 17 C -0.105 4.105 18 C -0.100 4.100 19 C -0.119 4.119 20 C -0.098 4.098 21 C -0.122 4.122 22 N -0.087 5.087 23 N -0.238 5.238 24 H 0.040 0.960 25 H 0.076 0.924 26 H 0.012 0.988 27 H 0.033 0.967 28 H -0.006 1.006 29 H 0.261 0.739 30 H 0.090 0.910 31 H 0.044 0.956 32 H 0.189 0.811 33 H 0.143 0.857 34 H 0.135 0.865 35 H 0.131 0.869 36 H 0.136 0.864 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.829 -21.008 -9.132 25.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.258 5.258 3 C 0.069 3.931 4 C -0.544 4.544 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.003 3.997 13 C -0.117 4.117 14 C -0.201 4.201 15 N -0.040 5.040 16 C 0.042 3.958 17 C -0.125 4.125 18 C -0.118 4.118 19 C -0.137 4.137 20 C -0.117 4.117 21 C -0.143 4.143 22 N -0.065 5.065 23 N -0.105 5.105 24 H 0.059 0.941 25 H 0.095 0.905 26 H 0.031 0.969 27 H 0.051 0.949 28 H 0.011 0.989 29 H 0.071 0.929 30 H 0.109 0.891 31 H 0.062 0.938 32 H 0.206 0.794 33 H 0.160 0.840 34 H 0.153 0.847 35 H 0.149 0.851 36 H 0.153 0.847 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.654 -21.937 -7.873 25.228 hybrid contribution -1.228 1.637 -0.543 2.117 sum -10.882 -20.300 -8.416 24.522 Atomic orbital electron populations 1.22240 0.88959 0.99287 1.00666 1.62056 1.06921 1.17831 1.39022 1.19767 0.95646 0.80863 0.96818 1.21148 1.34796 0.96845 1.01661 0.91860 1.24974 0.95312 0.97323 0.96978 1.69953 1.38398 1.11492 1.34048 0.86490 0.78879 0.78326 0.83669 1.20582 1.21350 1.19907 1.20334 1.01477 0.84430 0.93411 1.22145 0.93518 0.98062 0.97960 1.23502 1.04380 0.84080 1.08097 1.44632 1.18214 1.07697 1.33447 1.17722 0.90541 0.87131 1.00387 1.21039 1.00943 0.90447 1.00113 1.21120 0.93906 0.99131 0.97683 1.21337 0.97807 0.97094 0.97484 1.21039 0.98803 0.92376 0.99466 1.20972 0.93495 1.01049 0.98751 1.78335 0.95792 1.20005 1.12335 1.75105 1.23181 0.95188 1.17038 0.94141 0.90544 0.96926 0.94851 0.98870 0.92925 0.89148 0.93789 0.79398 0.83953 0.84680 0.85133 0.84659 0.84716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 9.14 60.06 0.55 1.28 16 2 N -0.53 -11.89 4.74 -245.82 -1.17 -13.06 16 3 C 0.19 5.08 4.72 -4.97 -0.02 5.05 16 4 C -0.51 -14.41 8.46 -34.44 -0.29 -14.70 16 5 H 0.06 1.80 7.12 -52.49 -0.37 1.43 16 6 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 7 N -0.90 -26.83 13.29 55.43 0.74 -26.09 16 8 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 12 C 0.13 2.49 5.53 -4.97 -0.03 2.46 16 13 C 0.02 0.35 5.96 -82.77 -0.49 -0.15 16 14 C -0.05 -0.75 9.88 -16.67 -0.16 -0.92 16 15 N -0.25 -3.64 3.56 -10.47 -0.04 -3.68 16 16 C 0.13 1.52 6.68 -83.57 -0.56 0.96 16 17 C -0.11 -1.04 9.62 -39.41 -0.38 -1.42 16 18 C -0.10 -0.71 10.04 -39.61 -0.40 -1.10 16 19 C -0.12 -0.72 10.04 -39.55 -0.40 -1.12 16 20 C -0.10 -0.64 10.04 -39.61 -0.40 -1.04 16 21 C -0.12 -1.05 9.46 -39.41 -0.37 -1.42 16 22 N -0.09 -1.51 12.42 60.35 0.75 -0.76 16 23 N -0.24 -4.61 12.39 33.29 0.41 -4.20 16 24 H 0.04 0.71 6.58 -51.93 -0.34 0.37 16 25 H 0.08 1.63 6.76 -51.93 -0.35 1.28 16 26 H 0.01 0.23 8.14 -51.92 -0.42 -0.20 16 27 H 0.03 0.93 7.93 -51.93 -0.41 0.52 16 28 H -0.01 -0.18 8.12 -51.93 -0.42 -0.60 16 29 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.09 1.72 7.93 -51.93 -0.41 1.31 16 31 H 0.04 0.73 8.12 -51.93 -0.42 0.31 16 32 H 0.19 1.95 7.11 -52.49 -0.37 1.57 16 33 H 0.14 1.45 7.69 -52.49 -0.40 1.05 16 34 H 0.14 0.63 8.06 -52.49 -0.42 0.20 16 35 H 0.13 0.46 8.06 -52.49 -0.42 0.04 16 36 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 37 H 0.14 0.96 6.77 -52.49 -0.36 0.60 16 LS Contribution 317.04 15.07 4.78 4.78 Total: -1.00 -33.48 317.04 -7.29 -40.77 By element: Atomic # 1 Polarization: 0.64 SS G_CDS: -4.69 Total: -4.05 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: -3.05 Total: -10.63 kcal Atomic # 7 Polarization: -48.48 SS G_CDS: 0.69 Total: -47.78 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.48 -7.29 -40.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000505351637.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.465 kcal (2) G-P(sol) polarization free energy of solvation -33.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds