Wall clock time and date at job start Mon Mar 30 2020 05:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46907 * 110.99587 * 2 1 4 4 C 1.50706 * 109.46807 * 66.04732 * 3 2 1 5 5 H 1.07995 * 119.99955 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99649 * 179.97438 * 4 3 2 7 7 N 1.31509 * 120.00214 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99960 * 180.02562 * 6 4 3 9 9 H 1.48493 * 109.47352 * 89.99601 * 8 6 4 10 10 H 1.48496 * 109.47265 * 210.00209 * 8 6 4 11 11 H 1.48509 * 109.46877 * 329.99791 * 8 6 4 12 12 C 1.46900 * 111.00479 * 236.05085 * 2 1 3 13 13 C 1.50704 * 109.46712 * 293.95421 * 12 2 1 14 14 C 1.35369 * 126.73105 * 95.31096 * 13 12 2 15 15 N 1.36116 * 106.04609 * 180.12205 * 14 13 12 16 16 C 1.40254 * 125.94381 * 179.84825 * 15 14 13 17 17 C 1.38817 * 120.06733 * 179.72049 * 16 15 14 18 18 C 1.38120 * 119.93447 * 179.97438 * 17 16 15 19 19 C 1.38285 * 120.06636 * 359.97353 * 18 17 16 20 20 C 1.38280 * 120.12709 * 0.02562 * 19 18 17 21 21 C 1.38128 * 120.06481 * 359.97438 * 20 19 18 22 22 N 1.28733 * 108.12004 * 359.58477 * 15 14 13 23 23 N 1.28610 * 110.22744 * 0.26647 * 22 15 14 24 24 H 1.09006 * 109.46722 * 183.94948 * 1 2 3 25 25 H 1.08992 * 109.47535 * 303.95062 * 1 2 3 26 26 H 1.09007 * 109.47350 * 63.95622 * 1 2 3 27 27 H 1.09000 * 109.46939 * 186.04627 * 3 2 1 28 28 H 1.08996 * 109.47282 * 306.04372 * 3 2 1 29 29 H 0.97004 * 120.00670 * 179.97438 * 7 6 4 30 30 H 1.08994 * 109.47328 * 173.95512 * 12 2 1 31 31 H 1.08998 * 109.46987 * 53.94858 * 12 2 1 32 32 H 1.07997 * 126.97969 * 359.97438 * 14 13 12 33 33 H 1.08001 * 120.03536 * 359.94908 * 17 16 15 34 34 H 1.08000 * 119.97110 * 179.97438 * 18 17 16 35 35 H 1.07994 * 119.93476 * 179.74806 * 19 18 17 36 36 H 1.07996 * 119.96164 * 180.02562 * 20 19 18 37 37 H 1.07998 * 120.02482 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0471 1.2985 5 1 1.0738 1.5114 2.0485 6 6 2.0274 3.3492 1.5290 7 7 2.7134 4.0013 0.6159 8 14 1.5836 4.1864 3.1388 9 1 2.6604 3.9493 4.1334 10 1 1.4317 5.6461 2.9121 11 1 0.3056 3.6294 3.6505 12 6 1.9956 -0.7659 -1.1376 13 6 1.6370 -2.2203 -0.9729 14 6 0.5694 -2.8568 -1.5093 15 7 0.6527 -4.1494 -1.0910 16 6 -0.2503 -5.1758 -1.4041 17 6 -0.0433 -6.4578 -0.9136 18 6 -0.9346 -7.4665 -1.2232 19 6 -2.0327 -7.2002 -2.0204 20 6 -2.2415 -5.9241 -2.5104 21 6 -1.3535 -4.9113 -2.2041 22 7 1.7076 -4.2672 -0.3626 23 7 2.3148 -3.1370 -0.2731 24 1 -0.3633 -1.0253 0.0708 25 1 -0.3634 0.5739 0.8524 26 1 -0.3634 0.4512 -0.9234 27 1 3.0796 1.3445 -0.1082 28 1 1.5610 1.9274 -0.8309 29 1 2.9879 4.9175 0.7778 30 1 3.0798 -0.6610 -1.1756 31 1 1.5612 -0.3871 -2.0628 32 1 -0.1948 -2.4258 -2.1391 33 1 0.8141 -6.6665 -0.2909 34 1 -0.7739 -8.4642 -0.8422 35 1 -2.7260 -7.9914 -2.2645 36 1 -3.1001 -5.7190 -3.1325 37 1 -1.5169 -3.9150 -2.5875 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000505351637.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:44 Heat of formation + Delta-G solvation = 118.120759 kcal Electronic energy + Delta-G solvation = -19649.302935 eV Core-core repulsion = 16621.441064 eV Total energy + Delta-G solvation = -3027.861871 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.51671 -40.24271 -38.39756 -35.68939 -34.72962 -32.89516 -31.92946 -30.87084 -29.30090 -28.40675 -25.93217 -25.30733 -24.00034 -22.57531 -22.42712 -21.39672 -19.39897 -18.48773 -17.68659 -17.22590 -16.76313 -16.45639 -16.05026 -15.88758 -15.69079 -15.45735 -14.99605 -14.48290 -14.19064 -14.06802 -13.77707 -13.40796 -13.08425 -12.80518 -12.76790 -12.64735 -12.54295 -12.31900 -12.12520 -12.02587 -11.91164 -11.75654 -11.32758 -10.61131 -10.38765 -10.08175 -9.60539 -9.00254 -8.19210 -6.28691 -0.41503 0.27615 0.96309 1.24682 1.36403 1.41518 1.43633 1.54103 2.41747 2.70887 3.13312 3.15808 3.43373 3.55089 3.77138 3.90993 3.97496 4.15502 4.21277 4.35291 4.38438 4.47772 4.58790 4.60832 4.70203 4.80856 4.96160 4.97676 5.06239 5.19059 5.30412 5.30879 5.33412 5.45181 5.59856 5.65289 5.93600 6.05404 6.32947 6.60168 6.86340 7.36541 7.40411 8.91683 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.038164 B = 0.003247 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.505444 B = 8622.217997 C = 8761.991547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.552 5.552 3 C 0.210 3.790 4 C -0.524 4.524 5 H 0.058 0.942 6 C 0.004 3.996 7 N -0.932 5.932 8 Si 0.968 3.032 9 H -0.277 1.277 10 H -0.279 1.279 11 H -0.265 1.265 12 C 0.140 3.860 13 C -0.006 4.006 14 C -0.031 4.031 15 N -0.239 5.239 16 C 0.088 3.912 17 C -0.122 4.122 18 C -0.101 4.101 19 C -0.105 4.105 20 C -0.096 4.096 21 C -0.121 4.121 22 N -0.110 5.110 23 N -0.285 5.285 24 H 0.062 0.938 25 H 0.054 0.946 26 H 0.029 0.971 27 H 0.005 0.995 28 H -0.023 1.023 29 H 0.265 0.735 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.231 0.769 33 H 0.126 0.874 34 H 0.159 0.841 35 H 0.165 0.835 36 H 0.168 0.832 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.970 -22.507 -9.980 28.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 N -0.277 5.277 3 C 0.084 3.916 4 C -0.563 4.563 5 H 0.076 0.924 6 C -0.194 4.194 7 N -0.573 5.573 8 Si 0.792 3.208 9 H -0.202 1.202 10 H -0.204 1.204 11 H -0.190 1.190 12 C 0.010 3.990 13 C -0.144 4.144 14 C -0.180 4.180 15 N -0.027 5.027 16 C -0.002 4.002 17 C -0.142 4.142 18 C -0.119 4.119 19 C -0.123 4.123 20 C -0.114 4.114 21 C -0.142 4.142 22 N -0.088 5.088 23 N -0.152 5.152 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.048 0.952 27 H 0.023 0.977 28 H -0.006 1.006 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.247 0.753 33 H 0.144 0.856 34 H 0.176 0.824 35 H 0.183 0.817 36 H 0.186 0.814 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -12.802 -23.492 -8.719 28.139 hybrid contribution -0.378 1.892 -0.385 1.968 sum -13.181 -21.600 -9.105 26.892 Atomic orbital electron populations 1.22171 0.87240 1.00434 1.00546 1.61896 1.08619 1.15591 1.41583 1.19391 0.93838 0.82972 0.95425 1.21442 1.34937 0.97456 1.02429 0.92366 1.25858 0.95021 0.97975 1.00578 1.70067 1.39217 1.11949 1.36042 0.85411 0.78842 0.77411 0.79113 1.20238 1.20396 1.18955 1.20226 1.00586 0.85077 0.93107 1.21977 0.95221 0.97339 0.99846 1.23958 1.03648 0.83607 1.06779 1.44878 1.17521 1.08540 1.31722 1.18188 0.91704 0.86940 1.03375 1.21138 1.01461 0.91050 1.00558 1.21440 0.93553 0.99407 0.97550 1.21821 0.97218 0.97926 0.95375 1.21490 0.98985 0.91883 0.99036 1.21280 0.92581 1.02580 0.97727 1.78240 0.97186 1.19456 1.13895 1.75031 1.24981 0.96265 1.18888 0.91898 0.92671 0.95222 0.97736 1.00571 0.92612 0.90840 0.91266 0.75306 0.85569 0.82375 0.81733 0.81415 0.83139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.72 9.14 127.69 1.17 2.88 16 2 N -0.55 -25.07 4.74 -931.62 -4.42 -29.49 16 3 C 0.21 11.38 4.72 85.56 0.40 11.79 16 4 C -0.52 -30.52 8.46 25.60 0.22 -30.30 16 5 H 0.06 3.38 7.12 -2.91 -0.02 3.35 16 6 C 0.00 0.22 5.46 84.66 0.46 0.68 16 7 N -0.93 -56.56 13.29 21.45 0.28 -56.28 16 8 Si 0.97 45.23 29.54 68.60 2.03 47.25 16 9 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 12 C 0.14 5.29 5.53 85.56 0.47 5.76 16 13 C -0.01 -0.21 5.96 41.60 0.25 0.04 16 14 C -0.03 -0.84 9.88 83.37 0.82 -0.01 16 15 N -0.24 -6.79 3.56 -187.05 -0.67 -7.45 16 16 C 0.09 1.88 6.68 38.07 0.25 2.13 16 17 C -0.12 -2.33 9.62 22.38 0.22 -2.11 16 18 C -0.10 -1.17 10.04 22.25 0.22 -0.94 16 19 C -0.11 -0.82 10.04 22.29 0.22 -0.59 16 20 C -0.10 -0.82 10.04 22.25 0.22 -0.60 16 21 C -0.12 -1.70 9.46 22.38 0.21 -1.49 16 22 N -0.11 -3.94 12.42 37.02 0.46 -3.48 16 23 N -0.29 -11.49 12.39 -48.59 -0.60 -12.09 16 24 H 0.06 2.13 6.58 -2.38 -0.02 2.11 16 25 H 0.05 2.35 6.76 -2.39 -0.02 2.33 16 26 H 0.03 1.03 8.14 -2.38 -0.02 1.02 16 27 H 0.00 0.27 7.93 -2.39 -0.02 0.25 16 28 H -0.02 -1.32 8.12 -2.39 -0.02 -1.34 16 29 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 30 H 0.07 2.96 7.93 -2.39 -0.02 2.94 16 31 H 0.07 2.24 8.12 -2.39 -0.02 2.22 16 32 H 0.23 3.91 7.11 -2.91 -0.02 3.89 16 33 H 0.13 2.71 7.69 -2.91 -0.02 2.69 16 34 H 0.16 1.00 8.06 -2.91 -0.02 0.98 16 35 H 0.17 0.21 8.06 -2.91 -0.02 0.18 16 36 H 0.17 0.38 8.06 -2.91 -0.02 0.36 16 37 H 0.15 1.53 6.77 -2.91 -0.02 1.51 16 Total: -1.00 -75.86 317.04 3.30 -72.56 By element: Atomic # 1 Polarization: 0.68 SS G_CDS: 1.07 Total: 1.75 kcal Atomic # 6 Polarization: -17.91 SS G_CDS: 5.15 Total: -12.76 kcal Atomic # 7 Polarization: -103.86 SS G_CDS: -4.94 Total: -108.80 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Total: -75.86 3.30 -72.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000505351637.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.684 kcal (2) G-P(sol) polarization free energy of solvation -75.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds