Wall clock time and date at job start Mon Mar 30 2020 05:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.46942 * 2 1 4 4 N 1.40085 * 126.04181 * 270.28832 * 3 2 1 5 5 C 1.30841 * 108.20558 * 180.16869 * 4 3 2 6 6 C 1.39874 * 108.20033 * 359.59252 * 5 4 3 7 7 C 1.34955 * 126.03207 * 90.00369 * 3 2 1 8 8 C 1.50699 * 126.12850 * 0.03403 * 7 3 2 9 9 N 1.46499 * 109.47050 * 274.98163 * 8 7 3 10 10 C 1.39078 * 120.00136 * 179.97438 * 9 8 7 11 11 C 1.38747 * 119.65382 * 359.72601 * 10 9 8 12 12 C 1.40778 * 118.66760 * 179.75752 * 11 10 9 13 13 C 1.41558 * 120.99489 * 180.26303 * 12 11 10 14 14 H 1.07998 * 119.99632 * 203.52814 * 13 12 11 15 15 C 1.40020 * 119.99858 * 23.52817 * 13 12 11 16 16 N 1.30744 * 120.00191 * 17.01045 * 15 13 12 17 17 Si 1.86804 * 120.00012 * 197.00444 * 15 13 12 18 18 H 1.48503 * 109.46726 * 90.00453 * 17 15 13 19 19 H 1.48499 * 109.47104 * 210.00111 * 17 15 13 20 20 H 1.48497 * 109.47049 * 330.00449 * 17 15 13 21 21 C 1.41193 * 118.01287 * 0.50681 * 12 11 10 22 22 C 1.36555 * 119.14337 * 359.75490 * 21 12 11 23 23 N 1.32087 * 121.27179 * 359.97438 * 22 21 12 24 24 H 1.09001 * 109.47478 * 59.99835 * 1 2 3 25 25 H 1.09001 * 109.47152 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47218 * 299.99899 * 1 2 3 27 27 H 1.08999 * 109.47359 * 240.00636 * 2 1 3 28 28 H 1.09001 * 109.47478 * 120.00165 * 2 1 3 29 29 H 1.07993 * 125.89420 * 179.85362 * 5 4 3 30 30 H 1.08003 * 126.03490 * 180.28094 * 6 5 4 31 31 H 1.08998 * 109.46967 * 34.98433 * 8 7 3 32 32 H 1.08996 * 109.46786 * 154.98377 * 8 7 3 33 33 H 0.97000 * 120.00238 * 0.02562 * 9 8 7 34 34 H 1.07997 * 120.66964 * 0.02562 * 11 10 9 35 35 H 0.97004 * 120.00579 * 179.97438 * 16 15 13 36 36 H 1.07995 * 120.42442 * 179.77608 * 21 12 11 37 37 H 1.08002 * 119.36170 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2877 2.1603 -1.1327 5 6 2.7081 3.3327 -0.7320 6 6 2.7112 3.3411 0.6668 7 6 2.2830 2.1297 1.0914 8 6 2.1299 1.6942 2.5259 9 7 0.7447 1.9034 2.9546 10 6 0.3599 1.5722 4.2493 11 6 1.2924 1.0388 5.1274 12 6 0.8816 0.7158 6.4346 13 6 1.7933 0.1742 7.3724 14 1 1.4288 -0.4094 8.2047 15 6 3.1676 0.3953 7.2207 16 7 3.5934 1.3508 6.4365 17 14 4.3927 -0.6750 8.1389 18 1 4.7425 -1.8534 7.3056 19 1 5.6198 0.1109 8.4248 20 1 3.7897 -1.1334 9.4162 21 6 -0.4682 0.9433 6.7808 22 6 -1.3151 1.4674 5.8466 23 7 -0.8950 1.7642 4.6300 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 2.9983 4.1536 -1.3708 30 1 3.0033 4.1684 1.2965 31 1 2.3817 0.6373 2.6135 32 1 2.7979 2.2804 3.1568 33 1 0.0957 2.2722 2.3351 34 1 2.3139 0.8786 4.8157 35 1 4.5455 1.5042 6.3317 36 1 -0.8260 0.7063 7.7718 37 1 -2.3484 1.6425 6.1075 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000547339921.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:10 Heat of formation + Delta-G solvation = 105.101308 kcal Electronic energy + Delta-G solvation = -20300.375528 eV Core-core repulsion = 17271.949091 eV Total energy + Delta-G solvation = -3028.426437 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.18197 -38.45855 -35.28348 -34.33917 -33.98034 -31.06955 -30.35585 -29.29831 -27.99328 -25.94628 -25.23656 -23.74765 -21.65523 -20.97697 -20.61870 -19.40372 -17.86007 -16.72673 -15.79104 -15.35428 -15.13124 -14.88200 -14.51115 -14.07276 -13.97936 -13.70363 -13.41041 -13.14579 -12.85640 -12.59398 -12.46692 -12.20558 -12.03153 -11.70732 -11.41048 -11.30028 -11.18272 -10.84674 -10.54900 -10.22848 -9.96146 -9.46498 -9.26190 -9.01946 -8.46619 -8.00524 -7.90518 -6.86056 -6.49517 -4.57902 1.86476 2.55594 2.79286 2.89311 3.00439 3.02682 3.05631 3.30857 3.86247 4.20009 4.55611 4.68009 4.71954 4.98898 5.07710 5.17705 5.36144 5.56724 5.66648 5.76544 5.83256 5.90744 5.94663 6.06790 6.13103 6.33541 6.71265 6.73963 6.76881 6.93438 7.02545 7.08697 7.24024 7.51843 7.78969 7.82611 7.91061 8.09165 8.39511 8.72601 8.81401 8.86100 9.71950 10.09382 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.017681 B = 0.005326 C = 0.004617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.250534 B = 5255.474865 C = 6063.131068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.127 3.873 3 N -0.360 5.360 4 N -0.300 5.300 5 C 0.040 3.960 6 C -0.258 4.258 7 C 0.079 3.921 8 C 0.206 3.794 9 N -0.738 5.738 10 C 0.385 3.615 11 C -0.279 4.279 12 C 0.152 3.848 13 C -0.456 4.456 14 H 0.080 0.920 15 C 0.080 3.920 16 N -0.784 5.784 17 Si 0.908 3.092 18 H -0.267 1.267 19 H -0.277 1.277 20 H -0.261 1.261 21 C -0.301 4.301 22 C 0.131 3.869 23 N -0.622 5.622 24 H 0.061 0.939 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.091 0.909 28 H 0.095 0.905 29 H 0.181 0.819 30 H 0.148 0.852 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.389 0.611 34 H 0.127 0.873 35 H 0.281 0.719 36 H 0.097 0.903 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.152 -0.784 -9.440 9.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.006 3.994 3 N -0.144 5.144 4 N -0.121 5.121 5 C -0.145 4.145 6 C -0.288 4.288 7 C -0.049 4.049 8 C 0.079 3.921 9 N -0.375 5.375 10 C 0.158 3.842 11 C -0.305 4.305 12 C 0.144 3.856 13 C -0.487 4.487 14 H 0.098 0.902 15 C -0.139 4.139 16 N -0.409 5.409 17 Si 0.732 3.268 18 H -0.192 1.192 19 H -0.202 1.202 20 H -0.185 1.185 21 C -0.326 4.326 22 C -0.021 4.021 23 N -0.345 5.345 24 H 0.080 0.920 25 H 0.094 0.906 26 H 0.089 0.911 27 H 0.110 0.890 28 H 0.113 0.887 29 H 0.198 0.802 30 H 0.166 0.834 31 H 0.081 0.919 32 H 0.106 0.894 33 H 0.223 0.777 34 H 0.144 0.856 35 H 0.092 0.908 36 H 0.116 0.884 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.647 -1.259 -11.109 11.199 hybrid contribution 1.198 -0.028 1.531 1.944 sum 1.845 -1.287 -9.578 9.838 Atomic orbital electron populations 1.22190 0.94000 1.03177 1.03447 1.21688 0.95596 0.77882 1.04197 1.48728 1.50518 1.11943 1.03201 1.77292 1.22069 1.04409 1.08363 1.23791 0.99810 0.95846 0.95036 1.21335 1.14075 0.98411 0.94952 1.21256 1.00578 0.92570 0.90494 1.19557 0.85639 1.00731 0.86152 1.43976 1.08582 1.73574 1.11413 1.18052 0.89714 0.92130 0.84351 1.21488 0.99986 1.15000 0.94072 1.17585 0.90916 0.85926 0.91200 1.19601 0.90482 1.29229 1.09433 0.90206 1.25929 0.99628 0.93829 0.94562 1.69803 1.16736 1.23562 1.30776 0.86317 0.79341 0.80511 0.80616 1.19248 1.20224 1.18527 1.21494 0.96410 1.14750 0.99950 1.21215 0.97513 0.94984 0.88383 1.66707 1.16188 1.31337 1.20252 0.92002 0.90625 0.91110 0.89031 0.88724 0.80192 0.83420 0.91893 0.89399 0.77693 0.85564 0.90840 0.88449 0.86415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 10.24 37.16 0.38 -1.61 16 2 C 0.13 1.53 6.96 -4.04 -0.03 1.50 16 3 N -0.36 -5.22 3.61 -57.14 -0.21 -5.42 16 4 N -0.30 -4.48 12.58 30.62 0.39 -4.10 16 5 C 0.04 0.53 12.03 -17.36 -0.21 0.32 16 6 C -0.26 -3.65 10.72 -40.01 -0.43 -4.08 16 7 C 0.08 1.20 6.30 -82.26 -0.52 0.68 16 8 C 0.21 3.46 5.06 -5.19 -0.03 3.44 16 9 N -0.74 -14.05 5.62 -61.66 -0.35 -14.39 16 10 C 0.39 8.96 7.65 -154.98 -1.19 7.78 16 11 C -0.28 -6.98 8.02 -38.43 -0.31 -7.29 16 12 C 0.15 3.97 5.61 -106.55 -0.60 3.38 16 13 C -0.46 -11.73 9.12 -37.65 -0.34 -12.08 16 14 H 0.08 1.98 7.90 -52.49 -0.41 1.56 16 15 C 0.08 1.92 5.20 -17.35 -0.09 1.83 16 16 N -0.78 -19.19 10.91 55.55 0.61 -18.59 16 17 Si 0.91 17.89 29.59 -169.99 -5.03 12.86 16 18 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 19 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 20 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 21 C -0.30 -7.32 9.85 -39.07 -0.38 -7.70 16 22 C 0.13 3.03 11.10 -18.05 -0.20 2.83 16 23 N -0.62 -14.82 10.36 -12.82 -0.13 -14.95 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.07 0.98 7.75 -51.93 -0.40 0.58 16 27 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.09 1.10 7.15 -51.93 -0.37 0.72 16 29 H 0.18 1.72 8.06 -52.49 -0.42 1.30 16 30 H 0.15 1.91 8.06 -52.48 -0.42 1.48 16 31 H 0.06 1.06 7.02 -51.93 -0.36 0.69 16 32 H 0.09 1.58 7.94 -51.93 -0.41 1.17 16 33 H 0.39 7.17 8.30 -40.82 -0.34 6.83 16 34 H 0.13 3.16 4.84 -52.49 -0.25 2.91 16 35 H 0.28 6.24 8.29 -40.82 -0.34 5.90 16 36 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 37 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16 LS Contribution 317.69 15.07 4.79 4.79 Total: -1.00 -28.79 317.69 -8.53 -37.32 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -4.65 Total: 13.50 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: -3.94 Total: -11.01 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: 0.31 Total: -57.45 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -5.03 Total: 12.86 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.79 -8.53 -37.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547339921.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.418 kcal (2) G-P(sol) polarization free energy of solvation -28.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds