Wall clock time and date at job start Mon Mar 30 2020 05:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.46942 * 2 1 4 4 N 1.40085 * 126.04181 * 270.28832 * 3 2 1 5 5 C 1.30841 * 108.20558 * 180.16869 * 4 3 2 6 6 C 1.39874 * 108.20033 * 359.59252 * 5 4 3 7 7 C 1.34955 * 126.03207 * 90.00369 * 3 2 1 8 8 C 1.50699 * 126.12850 * 0.03403 * 7 3 2 9 9 N 1.46499 * 109.47050 * 274.98163 * 8 7 3 10 10 C 1.39078 * 120.00136 * 179.97438 * 9 8 7 11 11 C 1.38747 * 119.65382 * 359.72601 * 10 9 8 12 12 C 1.40778 * 118.66760 * 179.75752 * 11 10 9 13 13 C 1.41558 * 120.99489 * 180.26303 * 12 11 10 14 14 H 1.07998 * 119.99632 * 203.52814 * 13 12 11 15 15 C 1.40020 * 119.99858 * 23.52817 * 13 12 11 16 16 N 1.30744 * 120.00191 * 17.01045 * 15 13 12 17 17 Si 1.86804 * 120.00012 * 197.00444 * 15 13 12 18 18 H 1.48503 * 109.46726 * 90.00453 * 17 15 13 19 19 H 1.48499 * 109.47104 * 210.00111 * 17 15 13 20 20 H 1.48497 * 109.47049 * 330.00449 * 17 15 13 21 21 C 1.41193 * 118.01287 * 0.50681 * 12 11 10 22 22 C 1.36555 * 119.14337 * 359.75490 * 21 12 11 23 23 N 1.32087 * 121.27179 * 359.97438 * 22 21 12 24 24 H 1.09001 * 109.47478 * 59.99835 * 1 2 3 25 25 H 1.09001 * 109.47152 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47218 * 299.99899 * 1 2 3 27 27 H 1.08999 * 109.47359 * 240.00636 * 2 1 3 28 28 H 1.09001 * 109.47478 * 120.00165 * 2 1 3 29 29 H 1.07993 * 125.89420 * 179.85362 * 5 4 3 30 30 H 1.08003 * 126.03490 * 180.28094 * 6 5 4 31 31 H 1.08998 * 109.46967 * 34.98433 * 8 7 3 32 32 H 1.08996 * 109.46786 * 154.98377 * 8 7 3 33 33 H 0.97000 * 120.00238 * 0.02562 * 9 8 7 34 34 H 1.07997 * 120.66964 * 0.02562 * 11 10 9 35 35 H 0.97004 * 120.00579 * 179.97438 * 16 15 13 36 36 H 1.07995 * 120.42442 * 179.77608 * 21 12 11 37 37 H 1.08002 * 119.36170 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2877 2.1603 -1.1327 5 6 2.7081 3.3327 -0.7320 6 6 2.7112 3.3411 0.6668 7 6 2.2830 2.1297 1.0914 8 6 2.1299 1.6942 2.5259 9 7 0.7447 1.9034 2.9546 10 6 0.3599 1.5722 4.2493 11 6 1.2924 1.0388 5.1274 12 6 0.8816 0.7158 6.4346 13 6 1.7933 0.1742 7.3724 14 1 1.4288 -0.4094 8.2047 15 6 3.1676 0.3953 7.2207 16 7 3.5934 1.3508 6.4365 17 14 4.3927 -0.6750 8.1389 18 1 4.7425 -1.8534 7.3056 19 1 5.6198 0.1109 8.4248 20 1 3.7897 -1.1334 9.4162 21 6 -0.4682 0.9433 6.7808 22 6 -1.3151 1.4674 5.8466 23 7 -0.8950 1.7642 4.6300 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 2.9983 4.1536 -1.3708 30 1 3.0033 4.1684 1.2965 31 1 2.3817 0.6373 2.6135 32 1 2.7979 2.2804 3.1568 33 1 0.0957 2.2722 2.3351 34 1 2.3139 0.8786 4.8157 35 1 4.5455 1.5042 6.3317 36 1 -0.8260 0.7063 7.7718 37 1 -2.3484 1.6425 6.1075 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000547339921.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:10 Heat of formation + Delta-G solvation = 88.732973 kcal Electronic energy + Delta-G solvation = -20301.085312 eV Core-core repulsion = 17271.949091 eV Total energy + Delta-G solvation = -3029.136221 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.29569 -40.26295 -36.84056 -35.84767 -35.33972 -32.65289 -32.00156 -30.35615 -29.60745 -27.82084 -26.70287 -24.75043 -23.45302 -22.39874 -22.05550 -20.59579 -19.60030 -18.02414 -17.53035 -16.92335 -16.56148 -16.03612 -15.95514 -15.76839 -15.28635 -14.97441 -14.94032 -14.65096 -14.30153 -14.19566 -13.81435 -13.46116 -13.18043 -13.13034 -12.90915 -12.80892 -12.60579 -12.28191 -11.91009 -11.81992 -11.66871 -11.24038 -10.72523 -10.38339 -9.89031 -9.79572 -9.58133 -8.66824 -8.24636 -6.50758 0.69801 1.06573 1.14910 1.41206 1.50983 1.53546 1.61407 1.80592 2.21277 2.66063 2.84016 3.45453 3.58475 3.83647 4.03137 4.07869 4.15478 4.26461 4.29794 4.53199 4.63812 4.69976 4.77882 4.87493 4.89771 4.97407 5.09435 5.13558 5.18867 5.21302 5.35098 5.64813 5.71493 5.97075 6.00158 6.09308 6.31149 6.58608 6.70023 6.91101 6.92163 7.03016 7.88118 8.30517 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.017681 B = 0.005326 C = 0.004617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.250534 B = 5255.474865 C = 6063.131068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.121 3.879 3 N -0.364 5.364 4 N -0.317 5.317 5 C 0.045 3.955 6 C -0.261 4.261 7 C 0.065 3.935 8 C 0.216 3.784 9 N -0.724 5.724 10 C 0.386 3.614 11 C -0.300 4.300 12 C 0.122 3.878 13 C -0.489 4.489 14 H 0.078 0.922 15 C 0.043 3.957 16 N -0.807 5.807 17 Si 0.981 3.019 18 H -0.262 1.262 19 H -0.267 1.267 20 H -0.259 1.259 21 C -0.322 4.322 22 C 0.132 3.868 23 N -0.633 5.633 24 H 0.059 0.941 25 H 0.095 0.905 26 H 0.045 0.955 27 H 0.110 0.890 28 H 0.095 0.905 29 H 0.216 0.784 30 H 0.158 0.842 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.394 0.606 34 H 0.120 0.880 35 H 0.290 0.710 36 H 0.107 0.893 37 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.788 -0.910 -10.190 10.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.001 3.999 3 N -0.147 5.147 4 N -0.139 5.139 5 C -0.139 4.139 6 C -0.292 4.292 7 C -0.063 4.063 8 C 0.090 3.910 9 N -0.361 5.361 10 C 0.156 3.844 11 C -0.327 4.327 12 C 0.114 3.886 13 C -0.519 4.519 14 H 0.097 0.903 15 C -0.175 4.175 16 N -0.432 5.432 17 Si 0.802 3.198 18 H -0.186 1.186 19 H -0.192 1.192 20 H -0.183 1.183 21 C -0.347 4.347 22 C -0.020 4.020 23 N -0.357 5.357 24 H 0.078 0.922 25 H 0.114 0.886 26 H 0.065 0.935 27 H 0.128 0.872 28 H 0.113 0.887 29 H 0.233 0.767 30 H 0.175 0.825 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.228 0.772 34 H 0.138 0.862 35 H 0.101 0.899 36 H 0.125 0.875 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 1.278 -1.377 -11.891 12.038 hybrid contribution 0.971 0.072 1.703 1.962 sum 2.249 -1.305 -10.187 10.514 Atomic orbital electron populations 1.22116 0.93751 1.04068 1.02031 1.21892 0.95757 0.77130 1.05148 1.48915 1.50472 1.12550 1.02791 1.77274 1.22713 1.05201 1.08702 1.24355 0.98490 0.96133 0.94945 1.21598 1.13486 0.98247 0.95830 1.21029 1.02057 0.93431 0.89748 1.19404 0.83993 1.00375 0.87245 1.43973 1.09590 1.72518 1.09996 1.18241 0.89419 0.91226 0.85493 1.21463 1.00114 1.16714 0.94382 1.18016 0.92088 0.86533 0.91963 1.19863 0.91821 1.30329 1.09929 0.90340 1.26738 1.00789 0.94648 0.95319 1.69840 1.17744 1.24291 1.31374 0.85217 0.76821 0.78598 0.79190 1.18630 1.19169 1.18307 1.21682 0.96234 1.15839 1.00915 1.21734 0.98881 0.93561 0.87836 1.66863 1.16254 1.31881 1.20690 0.92167 0.88640 0.93542 0.87180 0.88676 0.76714 0.82467 0.92104 0.90734 0.77159 0.86216 0.89922 0.87497 0.83046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.62 10.24 71.98 0.74 -2.88 16 2 C 0.12 2.78 6.96 86.38 0.60 3.38 16 3 N -0.36 -10.14 3.61 -334.68 -1.21 -11.35 16 4 N -0.32 -8.92 12.58 -57.02 -0.72 -9.64 16 5 C 0.05 1.10 12.03 85.24 1.03 2.13 16 6 C -0.26 -7.05 10.72 21.99 0.24 -6.82 16 7 C 0.07 1.94 6.30 41.40 0.26 2.20 16 8 C 0.22 7.32 5.06 85.63 0.43 7.76 16 9 N -0.72 -27.70 5.62 -348.98 -1.96 -29.67 16 10 C 0.39 18.11 7.65 132.90 1.02 19.13 16 11 C -0.30 -15.37 8.02 23.01 0.18 -15.18 16 12 C 0.12 6.53 5.61 -21.11 -0.12 6.41 16 13 C -0.49 -25.61 9.12 23.52 0.21 -25.39 16 14 H 0.08 3.97 7.90 -2.91 -0.02 3.95 16 15 C 0.04 2.05 5.20 85.29 0.44 2.49 16 16 N -0.81 -39.88 10.91 21.84 0.24 -39.64 16 17 Si 0.98 36.34 29.59 68.60 2.03 38.37 16 18 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 19 H -0.27 -9.39 7.11 99.48 0.71 -8.69 16 20 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 21 C -0.32 -15.81 9.85 22.60 0.22 -15.58 16 22 C 0.13 6.02 11.10 84.26 0.94 6.96 16 23 N -0.63 -30.03 10.36 -194.48 -2.02 -32.05 16 24 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.09 1.72 8.14 -2.39 -0.02 1.71 16 26 H 0.05 1.26 7.75 -2.39 -0.02 1.25 16 27 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.10 2.15 7.15 -2.39 -0.02 2.13 16 29 H 0.22 3.41 8.06 -2.91 -0.02 3.39 16 30 H 0.16 3.84 8.06 -2.91 -0.02 3.82 16 31 H 0.06 2.09 7.02 -2.39 -0.02 2.07 16 32 H 0.07 2.74 7.94 -2.39 -0.02 2.73 16 33 H 0.39 14.44 8.30 -92.71 -0.77 13.67 16 34 H 0.12 6.18 4.84 -2.91 -0.01 6.16 16 35 H 0.29 12.85 8.29 -92.71 -0.77 12.08 16 36 H 0.11 4.88 8.06 -2.91 -0.02 4.85 16 37 H 0.15 5.72 8.06 -2.91 -0.02 5.69 16 Total: -1.00 -61.46 317.69 2.88 -58.58 By element: Atomic # 1 Polarization: 40.48 SS G_CDS: 0.32 Total: 40.80 kcal Atomic # 6 Polarization: -21.60 SS G_CDS: 6.19 Total: -15.41 kcal Atomic # 7 Polarization: -116.68 SS G_CDS: -5.67 Total: -122.34 kcal Atomic # 14 Polarization: 36.34 SS G_CDS: 2.03 Total: 38.37 kcal Total: -61.46 2.88 -58.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547339921.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.314 kcal (2) G-P(sol) polarization free energy of solvation -61.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds