Wall clock time and date at job start Mon Mar 30 2020 06:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81402 * 102.99817 * 2 1 4 4 C 1.53006 * 109.47140 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47270 * 180.02562 * 4 3 2 6 6 N 1.46897 * 109.47226 * 179.97438 * 5 4 3 7 7 C 1.46905 * 110.99826 * 169.99824 * 6 5 4 8 8 C 1.53243 * 109.33672 * 187.25448 * 7 6 5 9 9 N 1.47076 * 108.52280 * 306.17389 * 8 7 6 10 10 C 1.34777 * 120.88062 * 231.18540 * 9 8 7 11 11 O 1.21687 * 120.00006 * 5.22924 * 10 9 8 12 12 C 1.46376 * 120.00313 * 185.22734 * 10 9 8 13 13 H 1.07997 * 119.99552 * 354.99977 * 12 10 9 14 14 C 1.40044 * 120.00321 * 175.00114 * 12 10 9 15 15 N 1.30673 * 119.99689 * 359.97438 * 14 12 10 16 16 Si 1.86795 * 120.00192 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47087 * 179.97438 * 16 14 12 18 18 H 1.48501 * 109.47042 * 299.99758 * 16 14 12 19 19 H 1.48503 * 109.47023 * 59.99987 * 16 14 12 20 20 C 1.47077 * 118.23996 * 51.45605 * 9 8 7 21 21 C 1.46898 * 111.00153 * 294.30122 * 6 5 4 22 22 H 1.08997 * 109.47042 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47201 * 300.00065 * 1 2 3 24 24 H 1.09008 * 109.46883 * 59.99676 * 1 2 3 25 25 H 1.09005 * 109.47109 * 60.00319 * 3 2 1 26 26 H 1.09003 * 109.47413 * 300.00281 * 3 2 1 27 27 H 1.08995 * 109.46611 * 59.99728 * 4 3 2 28 28 H 1.08999 * 109.46617 * 300.00403 * 4 3 2 29 29 H 1.09003 * 109.46988 * 59.99868 * 5 4 3 30 30 H 1.09003 * 109.47108 * 300.00343 * 5 4 3 31 31 H 1.08994 * 109.49159 * 67.30254 * 7 6 5 32 32 H 1.08999 * 109.51460 * 307.22708 * 7 6 5 33 33 H 1.08999 * 109.62657 * 186.46027 * 8 7 6 34 34 H 1.09008 * 109.62520 * 65.87988 * 8 7 6 35 35 H 0.97000 * 120.00181 * 180.02562 * 15 14 12 36 36 H 1.09007 * 109.62715 * 68.25082 * 20 9 8 37 37 H 1.09000 * 109.63081 * 188.83321 * 20 9 8 38 38 H 1.09001 * 109.49368 * 292.70476 * 21 6 5 39 39 H 1.09004 * 109.49188 * 52.78672 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9400 0.0006 5 6 4.0865 3.4308 0.0013 6 7 5.5461 3.5964 0.0025 7 6 5.9171 4.9978 -0.2350 8 6 7.4365 5.0984 -0.4066 9 7 8.0807 4.4734 0.7586 10 6 9.0312 5.1261 1.4564 11 8 9.2999 6.2814 1.1849 12 6 9.7404 4.4452 2.5409 13 1 9.4474 3.4484 2.8354 14 6 10.7988 5.0865 3.1965 15 7 11.1536 6.2925 2.8397 16 14 11.7043 4.2173 4.5799 17 1 12.7747 5.1032 5.1043 18 1 10.7495 3.8948 5.6706 19 1 12.3091 2.9628 4.0643 20 6 7.6644 3.1149 1.1384 21 6 6.1318 3.0946 1.2528 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 1.8031 2.2371 0.8901 26 1 1.8030 2.2372 -0.8900 27 1 4.1616 1.4703 -0.8891 28 1 4.1608 1.4704 0.8908 29 1 3.6672 3.9001 0.8913 30 1 3.6678 3.9007 -0.8887 31 1 5.6061 5.6054 0.6147 32 1 5.4244 5.3567 -1.1387 33 1 7.7294 6.1465 -0.4685 34 1 7.7377 4.5767 -1.3151 35 1 11.8869 6.7365 3.2936 36 1 7.9871 2.4062 0.3756 37 1 8.1080 2.8509 2.0985 38 1 5.8177 3.7288 2.0818 39 1 5.7949 2.0729 1.4279 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578140529.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:35 Heat of formation + Delta-G solvation = -32.644463 kcal Electronic energy + Delta-G solvation = -18918.412758 eV Core-core repulsion = 15987.164417 eV Total energy + Delta-G solvation = -2931.248341 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.93320 -36.82820 -34.49045 -32.59524 -32.25121 -30.56106 -29.30682 -27.63562 -26.17815 -24.25226 -23.13897 -21.38319 -20.55349 -18.80129 -16.82284 -16.39832 -15.82997 -15.64929 -14.92616 -14.75888 -14.42695 -14.27455 -14.11843 -13.98864 -13.72044 -13.60548 -13.24029 -12.53241 -12.45273 -12.04731 -11.79702 -11.54630 -11.34396 -11.15165 -11.02976 -10.87967 -10.81576 -10.68544 -10.36292 -10.24261 -10.16260 -9.94083 -8.85185 -8.18643 -7.96357 -7.58399 -7.17229 -6.19593 -4.64669 1.37827 2.31280 3.15618 3.20587 3.22200 3.96938 4.10751 4.55184 4.60727 4.65096 4.77741 4.78366 4.83431 5.04554 5.18282 5.32056 5.36295 5.41166 5.50414 5.57883 5.70670 5.76585 5.84959 5.88766 5.97459 6.04185 6.14812 6.29823 6.47718 6.55248 6.72944 7.24570 7.29370 7.45349 7.62672 8.13710 8.37085 9.02008 9.45015 10.57759 10.76340 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.030696 B = 0.003423 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.953238 B = 8177.959309 C = 8910.669258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.265 6.265 3 C -0.081 4.081 4 C -0.101 4.101 5 C 0.061 3.939 6 N -0.536 5.536 7 C 0.046 3.954 8 C 0.125 3.875 9 N -0.645 5.645 10 C 0.560 3.440 11 O -0.580 6.580 12 C -0.545 4.545 13 H 0.072 0.928 14 C 0.088 3.912 15 N -0.769 5.769 16 Si 0.907 3.093 17 H -0.280 1.280 18 H -0.268 1.268 19 H -0.267 1.267 20 C 0.128 3.872 21 C 0.038 3.962 22 H 0.100 0.900 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.031 0.969 30 H 0.072 0.928 31 H 0.033 0.967 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.049 0.951 35 H 0.269 0.731 36 H 0.050 0.950 37 H 0.094 0.906 38 H 0.035 0.965 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.071 -9.951 -4.382 21.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.039 6.039 3 C -0.230 4.230 4 C -0.140 4.140 5 C -0.069 4.069 6 N -0.261 5.261 7 C -0.083 4.083 8 C 0.001 3.999 9 N -0.384 5.384 10 C 0.366 3.634 11 O -0.462 6.462 12 C -0.581 4.581 13 H 0.090 0.910 14 C -0.132 4.132 15 N -0.397 5.397 16 Si 0.731 3.269 17 H -0.206 1.206 18 H -0.193 1.193 19 H -0.192 1.192 20 C 0.004 3.996 21 C -0.091 4.091 22 H 0.118 0.882 23 H 0.094 0.906 24 H 0.094 0.906 25 H 0.098 0.902 26 H 0.099 0.901 27 H 0.100 0.900 28 H 0.093 0.907 29 H 0.049 0.951 30 H 0.091 0.909 31 H 0.052 0.948 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.112 0.888 38 H 0.053 0.947 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -16.923 -10.278 -4.880 20.392 hybrid contribution -0.945 0.978 1.334 1.905 sum -17.868 -9.300 -3.546 20.453 Atomic orbital electron populations 1.23368 0.94518 1.06419 1.04802 1.87026 1.06959 1.11896 1.98066 1.23378 1.00975 0.93802 1.04801 1.21339 0.91381 0.96987 1.04277 1.22032 0.88941 0.95276 1.00615 1.61934 1.08362 1.20129 1.35658 1.22511 0.98116 0.87573 1.00079 1.21203 0.89328 0.99803 0.89593 1.48243 1.42874 1.15923 1.31329 1.18247 0.77657 0.85629 0.81897 1.90584 1.67126 1.17797 1.70727 1.20939 1.16854 1.02465 1.17877 0.90986 1.25730 0.96344 0.94286 0.96854 1.70007 1.22708 1.11357 1.35674 0.86450 0.79279 0.79847 0.81307 1.20562 1.19259 1.19187 1.21575 0.91162 0.85602 1.01295 1.22728 0.97023 0.99599 0.89735 0.88169 0.90588 0.90584 0.90224 0.90059 0.90005 0.90698 0.95083 0.90938 0.94821 0.90910 0.89594 0.93256 0.92041 0.93142 0.88800 0.94683 0.90532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.79 10.76 101.05 1.09 0.30 16 2 S -0.27 -2.57 22.38 -107.50 -2.41 -4.98 16 3 C -0.08 -0.70 5.94 37.16 0.22 -0.48 16 4 C -0.10 -1.04 5.15 -26.73 -0.14 -1.18 16 5 C 0.06 0.71 4.96 -3.83 -0.02 0.69 16 6 N -0.54 -7.96 4.63 -234.02 -1.08 -9.04 16 7 C 0.05 0.75 5.62 -3.70 -0.02 0.73 16 8 C 0.13 2.51 6.61 -3.60 -0.02 2.49 16 9 N -0.64 -14.99 3.00 -173.84 -0.52 -15.51 16 10 C 0.56 16.10 7.63 -12.99 -0.10 16.00 16 11 O -0.58 -18.91 14.49 5.20 0.08 -18.83 16 12 C -0.54 -15.31 8.86 -35.63 -0.32 -15.62 16 13 H 0.07 1.83 5.74 -52.49 -0.30 1.53 16 14 C 0.09 2.44 5.50 -17.37 -0.10 2.35 16 15 N -0.77 -23.11 11.84 55.55 0.66 -22.45 16 16 Si 0.91 20.06 29.56 -169.99 -5.02 15.03 16 17 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 18 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 19 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 20 C 0.13 2.45 6.50 -3.36 -0.02 2.43 16 21 C 0.04 0.60 5.48 -3.46 -0.02 0.58 16 22 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.08 0.42 8.14 -51.92 -0.42 0.00 16 25 H 0.08 0.65 8.14 -51.92 -0.42 0.23 16 26 H 0.08 0.63 8.14 -51.92 -0.42 0.21 16 27 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.07 0.83 6.40 -51.93 -0.33 0.50 16 29 H 0.03 0.36 8.12 -51.93 -0.42 -0.06 16 30 H 0.07 0.76 7.97 -51.93 -0.41 0.34 16 31 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 1.00 7.99 -51.93 -0.41 0.58 16 33 H 0.09 1.90 7.04 -51.93 -0.37 1.54 16 34 H 0.05 0.94 8.14 -51.92 -0.42 0.52 16 35 H 0.27 7.34 8.29 -40.82 -0.34 7.00 16 36 H 0.05 0.92 8.14 -51.92 -0.42 0.50 16 37 H 0.09 1.85 5.46 -51.93 -0.28 1.56 16 38 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 1.03 6.16 -51.93 -0.32 0.71 16 LS Contribution 324.82 15.07 4.89 4.89 Total: -1.00 -33.77 324.82 -9.07 -42.84 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -6.21 Total: -0.23 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: 0.56 Total: 8.27 kcal Atomic # 7 Polarization: -46.06 SS G_CDS: -0.95 Total: -47.01 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: 0.08 Total: -18.83 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.03 kcal Atomic # 16 Polarization: -2.57 SS G_CDS: -2.41 Total: -4.98 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.77 -9.07 -42.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578140529.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.193 kcal (2) G-P(sol) polarization free energy of solvation -33.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds