Wall clock time and date at job start Mon Mar 30 2020 06:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81402 * 102.99817 * 2 1 4 4 C 1.53006 * 109.47140 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47270 * 180.02562 * 4 3 2 6 6 N 1.46897 * 109.47226 * 179.97438 * 5 4 3 7 7 C 1.46905 * 110.99826 * 169.99824 * 6 5 4 8 8 C 1.53243 * 109.33672 * 187.25448 * 7 6 5 9 9 N 1.47076 * 108.52280 * 306.17389 * 8 7 6 10 10 C 1.34777 * 120.88062 * 231.18540 * 9 8 7 11 11 O 1.21687 * 120.00006 * 5.22924 * 10 9 8 12 12 C 1.46376 * 120.00313 * 185.22734 * 10 9 8 13 13 H 1.07997 * 119.99552 * 354.99977 * 12 10 9 14 14 C 1.40044 * 120.00321 * 175.00114 * 12 10 9 15 15 N 1.30673 * 119.99689 * 359.97438 * 14 12 10 16 16 Si 1.86795 * 120.00192 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47087 * 179.97438 * 16 14 12 18 18 H 1.48501 * 109.47042 * 299.99758 * 16 14 12 19 19 H 1.48503 * 109.47023 * 59.99987 * 16 14 12 20 20 C 1.47077 * 118.23996 * 51.45605 * 9 8 7 21 21 C 1.46898 * 111.00153 * 294.30122 * 6 5 4 22 22 H 1.08997 * 109.47042 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47201 * 300.00065 * 1 2 3 24 24 H 1.09008 * 109.46883 * 59.99676 * 1 2 3 25 25 H 1.09005 * 109.47109 * 60.00319 * 3 2 1 26 26 H 1.09003 * 109.47413 * 300.00281 * 3 2 1 27 27 H 1.08995 * 109.46611 * 59.99728 * 4 3 2 28 28 H 1.08999 * 109.46617 * 300.00403 * 4 3 2 29 29 H 1.09003 * 109.46988 * 59.99868 * 5 4 3 30 30 H 1.09003 * 109.47108 * 300.00343 * 5 4 3 31 31 H 1.08994 * 109.49159 * 67.30254 * 7 6 5 32 32 H 1.08999 * 109.51460 * 307.22708 * 7 6 5 33 33 H 1.08999 * 109.62657 * 186.46027 * 8 7 6 34 34 H 1.09008 * 109.62520 * 65.87988 * 8 7 6 35 35 H 0.97000 * 120.00181 * 180.02562 * 15 14 12 36 36 H 1.09007 * 109.62715 * 68.25082 * 20 9 8 37 37 H 1.09000 * 109.63081 * 188.83321 * 20 9 8 38 38 H 1.09001 * 109.49368 * 292.70476 * 21 6 5 39 39 H 1.09004 * 109.49188 * 52.78672 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9400 0.0006 5 6 4.0865 3.4308 0.0013 6 7 5.5461 3.5964 0.0025 7 6 5.9171 4.9978 -0.2350 8 6 7.4365 5.0984 -0.4066 9 7 8.0807 4.4734 0.7586 10 6 9.0312 5.1261 1.4564 11 8 9.2999 6.2814 1.1849 12 6 9.7404 4.4452 2.5409 13 1 9.4474 3.4484 2.8354 14 6 10.7988 5.0865 3.1965 15 7 11.1536 6.2925 2.8397 16 14 11.7043 4.2173 4.5799 17 1 12.7747 5.1032 5.1043 18 1 10.7495 3.8948 5.6706 19 1 12.3091 2.9628 4.0643 20 6 7.6644 3.1149 1.1384 21 6 6.1318 3.0946 1.2528 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 1.8031 2.2371 0.8901 26 1 1.8030 2.2372 -0.8900 27 1 4.1616 1.4703 -0.8891 28 1 4.1608 1.4704 0.8908 29 1 3.6672 3.9001 0.8913 30 1 3.6678 3.9007 -0.8887 31 1 5.6061 5.6054 0.6147 32 1 5.4244 5.3567 -1.1387 33 1 7.7294 6.1465 -0.4685 34 1 7.7377 4.5767 -1.3151 35 1 11.8869 6.7365 3.2936 36 1 7.9871 2.4062 0.3756 37 1 8.1080 2.8509 2.0985 38 1 5.8177 3.7288 2.0818 39 1 5.7949 2.0729 1.4279 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578140529.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:34 Heat of formation + Delta-G solvation = -56.132410 kcal Electronic energy + Delta-G solvation = -18919.431272 eV Core-core repulsion = 15987.164417 eV Total energy + Delta-G solvation = -2932.266855 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.48034 -38.57736 -35.94822 -34.66124 -33.65494 -32.04479 -29.82849 -29.18811 -27.92541 -25.52024 -24.60262 -22.74859 -21.84421 -20.55565 -18.52620 -17.86639 -17.23773 -16.66037 -16.39549 -16.03604 -15.88970 -15.78657 -15.50372 -15.26710 -14.60731 -14.43368 -14.32014 -14.14657 -13.63834 -13.36443 -13.21481 -12.98642 -12.81819 -12.68585 -12.63625 -12.35940 -12.21686 -12.00849 -11.93031 -11.77845 -11.44607 -10.92232 -10.89747 -9.80538 -9.47586 -9.01228 -8.68014 -8.29601 -6.84807 0.74765 1.39863 1.43418 1.54921 1.70844 2.23645 2.45107 2.71431 2.99487 3.58961 3.86347 3.93430 4.05535 4.11919 4.19372 4.32379 4.35039 4.36900 4.39391 4.50108 4.51103 4.58422 4.69292 4.72592 4.80452 4.89494 4.91477 4.95924 5.10791 5.20122 5.26103 5.37559 5.73241 6.01097 6.09784 6.13841 6.41320 6.87084 7.41721 8.45564 8.66577 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.030696 B = 0.003423 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.953238 B = 8177.959309 C = 8910.669258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 S -0.322 6.322 3 C -0.067 4.067 4 C -0.092 4.092 5 C 0.064 3.936 6 N -0.538 5.538 7 C 0.059 3.941 8 C 0.121 3.879 9 N -0.649 5.649 10 C 0.540 3.460 11 O -0.634 6.634 12 C -0.570 4.570 13 H 0.094 0.906 14 C 0.028 3.972 15 N -0.824 5.824 16 Si 0.997 3.003 17 H -0.275 1.275 18 H -0.253 1.253 19 H -0.252 1.252 20 C 0.124 3.876 21 C 0.049 3.951 22 H 0.108 0.892 23 H 0.084 0.916 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.094 0.906 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.034 0.966 30 H 0.091 0.909 31 H 0.017 0.983 32 H 0.106 0.894 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.274 0.726 36 H 0.062 0.938 37 H 0.085 0.915 38 H 0.020 0.980 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.852 -12.025 -3.972 23.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 S -0.097 6.097 3 C -0.216 4.216 4 C -0.131 4.131 5 C -0.065 4.065 6 N -0.263 5.263 7 C -0.070 4.070 8 C -0.003 4.003 9 N -0.386 5.386 10 C 0.346 3.654 11 O -0.522 6.522 12 C -0.606 4.606 13 H 0.112 0.888 14 C -0.187 4.187 15 N -0.454 5.454 16 Si 0.816 3.184 17 H -0.200 1.200 18 H -0.177 1.177 19 H -0.176 1.176 20 C 0.000 4.000 21 C -0.080 4.080 22 H 0.127 0.873 23 H 0.103 0.897 24 H 0.106 0.894 25 H 0.106 0.894 26 H 0.113 0.887 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.052 0.948 30 H 0.109 0.891 31 H 0.035 0.965 32 H 0.124 0.876 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.103 0.897 38 H 0.039 0.961 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -18.767 -12.405 -4.499 22.942 hybrid contribution -0.485 1.593 1.112 2.002 sum -19.252 -10.812 -3.387 22.338 Atomic orbital electron populations 1.23408 0.91155 1.07365 1.05814 1.87218 1.10794 1.13454 1.98219 1.23273 0.99668 0.92806 1.05843 1.21217 0.92632 0.95747 1.03504 1.22102 0.86400 0.96350 1.01646 1.61919 1.10769 1.18760 1.34858 1.22337 0.95103 0.88543 1.00999 1.21329 0.92091 0.97932 0.88915 1.48148 1.41814 1.17287 1.31373 1.18679 0.78629 0.85341 0.82703 1.90529 1.69182 1.20061 1.72411 1.21478 1.17370 1.03546 1.18207 0.88825 1.27019 0.97013 0.94864 0.99808 1.70189 1.23729 1.13726 1.37710 0.85091 0.77714 0.78577 0.77066 1.20019 1.17705 1.17629 1.21760 0.93661 0.83428 1.01104 1.22590 0.94492 1.01095 0.89819 0.87298 0.89668 0.89446 0.89424 0.88718 0.90730 0.91519 0.94782 0.89102 0.96493 0.87594 0.92651 0.92079 0.91609 0.91944 0.89675 0.96129 0.87584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 10.76 113.37 1.22 0.10 16 2 S -0.32 -5.63 22.38 -56.49 -1.26 -6.90 16 3 C -0.07 -0.98 5.94 71.98 0.43 -0.55 16 4 C -0.09 -1.66 5.15 30.59 0.16 -1.50 16 5 C 0.06 1.29 4.96 86.30 0.43 1.71 16 6 N -0.54 -14.82 4.63 -894.31 -4.14 -18.95 16 7 C 0.06 1.85 5.62 86.38 0.49 2.33 16 8 C 0.12 4.95 6.61 86.35 0.57 5.52 16 9 N -0.65 -30.81 3.00 -822.12 -2.47 -33.28 16 10 C 0.54 32.29 7.63 86.36 0.66 32.94 16 11 O -0.63 -43.66 14.49 -4.31 -0.06 -43.72 16 12 C -0.57 -32.61 8.86 24.83 0.22 -32.39 16 13 H 0.09 4.76 5.74 -2.91 -0.02 4.74 16 14 C 0.03 1.57 5.50 85.30 0.47 2.04 16 15 N -0.82 -51.22 11.84 21.83 0.26 -50.96 16 16 Si 1.00 41.13 29.56 68.60 2.03 43.15 16 17 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 18 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 19 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 20 C 0.12 4.65 6.50 86.50 0.56 5.21 16 21 C 0.05 1.46 5.48 86.54 0.47 1.94 16 22 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 23 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 24 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.07 1.31 6.40 -2.39 -0.02 1.30 16 29 H 0.03 0.69 8.12 -2.39 -0.02 0.67 16 30 H 0.09 1.54 7.97 -2.39 -0.02 1.52 16 31 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.11 2.63 7.99 -2.39 -0.02 2.61 16 33 H 0.05 2.58 7.04 -2.39 -0.02 2.57 16 34 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 35 H 0.27 15.45 8.29 -92.71 -0.77 14.68 16 36 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 37 H 0.09 3.31 5.46 -2.39 -0.01 3.30 16 38 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.11 2.59 6.16 -2.38 -0.01 2.58 16 Total: -1.00 -77.06 324.82 1.05 -76.01 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: 1.02 Total: 17.30 kcal Atomic # 6 Polarization: 11.69 SS G_CDS: 5.67 Total: 17.36 kcal Atomic # 7 Polarization: -96.85 SS G_CDS: -6.35 Total: -103.20 kcal Atomic # 8 Polarization: -43.66 SS G_CDS: -0.06 Total: -43.72 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.15 kcal Atomic # 16 Polarization: -5.63 SS G_CDS: -1.26 Total: -6.90 kcal Total: -77.06 1.05 -76.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578140529.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.876 kcal (2) G-P(sol) polarization free energy of solvation -77.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds