Wall clock time and date at job start Mon Mar 30 2020 04:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00026 * 2 1 4 4 H 1.48494 * 109.47369 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47344 * 300.00523 * 3 2 1 6 6 H 1.48505 * 109.46860 * 60.00225 * 3 2 1 7 7 C 1.37876 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99906 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00052 * 359.97438 * 7 2 1 10 10 C 1.53008 * 109.46893 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46824 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46950 * 179.97438 * 11 10 9 13 13 H 1.09003 * 109.47158 * 55.00170 * 12 11 10 14 14 N 1.46901 * 109.47367 * 295.00048 * 12 11 10 15 15 C 1.50702 * 109.46900 * 174.99849 * 12 11 10 16 16 O 1.21284 * 119.99499 * 100.00196 * 15 12 11 17 17 N 1.34773 * 120.00429 * 280.00141 * 15 12 11 18 18 C 1.46387 * 119.64313 * 359.72789 * 17 15 12 19 19 C 1.53230 * 109.48999 * 115.19538 * 18 17 15 20 20 S 1.81737 * 108.80341 * 57.65011 * 19 18 17 21 21 C 1.81748 * 102.30630 * 305.46543 * 20 19 18 22 22 C 1.46376 * 119.65022 * 180.02562 * 17 15 12 23 23 H 0.96998 * 119.99825 * 359.97438 * 1 2 3 24 24 H 1.08993 * 109.47038 * 60.00710 * 9 7 2 25 25 H 1.09007 * 109.47068 * 300.00229 * 9 7 2 26 26 H 1.09001 * 109.46741 * 60.00607 * 10 9 7 27 27 H 1.08995 * 109.46793 * 299.99902 * 10 9 7 28 28 H 1.08999 * 109.46928 * 59.99985 * 11 10 9 29 29 H 1.08998 * 109.47334 * 300.00100 * 11 10 9 30 30 H 1.00893 * 111.00059 * 176.04467 * 14 12 11 31 31 H 1.00899 * 110.99723 * 300.00627 * 14 12 11 32 32 H 1.09004 * 109.46624 * 235.19847 * 18 17 15 33 33 H 1.08999 * 109.46689 * 355.18192 * 18 17 15 34 34 H 1.09003 * 109.57805 * 297.85770 * 19 18 17 35 35 H 1.08995 * 109.69529 * 177.51732 * 19 18 17 36 36 H 1.08998 * 109.57866 * 294.74177 * 21 20 19 37 37 H 1.09001 * 109.69623 * 174.40302 * 21 20 19 38 38 H 1.09007 * 109.46588 * 4.81242 * 22 17 15 39 39 H 1.09000 * 109.47186 * 124.80570 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4804 -4.9871 0.0001 12 6 2.4747 -6.1500 -0.0005 13 1 3.1594 -6.0431 0.8408 14 7 3.2369 -6.1419 -1.2563 15 6 1.7254 -7.4516 0.1240 16 8 1.5124 -8.1253 -0.8618 17 7 1.2919 -7.8670 1.3306 18 6 1.5585 -7.0506 2.5161 19 6 0.2341 -6.5418 3.0948 20 16 -0.8215 -7.9689 3.4847 21 6 -0.8715 -8.8581 1.9004 22 6 0.5654 -9.1327 1.4427 23 1 -0.4850 0.8400 0.0004 24 1 0.6242 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 2.8720 -3.6043 0.8895 27 1 2.8720 -3.6043 -0.8905 28 1 0.8535 -5.0451 -0.8896 29 1 0.8540 -5.0446 0.8903 30 1 3.9446 -6.8610 -1.2543 31 1 2.6241 -6.2397 -2.0519 32 1 2.0740 -7.6533 3.2638 33 1 2.1841 -6.2019 2.2395 34 1 -0.2651 -5.9076 2.3621 35 1 0.4255 -5.9700 4.0028 36 1 -1.3822 -8.2482 1.1552 37 1 -1.4017 -9.8022 2.0255 38 1 0.5492 -9.6294 0.4725 39 1 1.0625 -9.7738 2.1707 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594430335.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:58 Heat of formation + Delta-G solvation = -49.638717 kcal Electronic energy + Delta-G solvation = -19369.457043 eV Core-core repulsion = 16437.471776 eV Total energy + Delta-G solvation = -2931.985267 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.53737 -36.80374 -35.93946 -33.42794 -32.15177 -31.40475 -30.38317 -27.99750 -25.49501 -23.97084 -23.38781 -21.91847 -20.09816 -19.37041 -17.85568 -16.55519 -16.54031 -16.17530 -15.76114 -15.36817 -14.73070 -14.52802 -14.42474 -14.24316 -13.79678 -13.48996 -13.21262 -12.99074 -12.67360 -12.40779 -12.02908 -11.76639 -11.55489 -11.29586 -11.17836 -10.80101 -10.63569 -10.45432 -10.24954 -10.06753 -9.65718 -9.28133 -9.18751 -9.06444 -8.64496 -8.32577 -7.92548 -5.97901 -3.99699 1.44989 2.22205 2.37266 2.69642 3.32389 3.40066 3.44427 4.23740 4.39600 4.48176 4.53419 4.66346 4.74135 4.77580 4.91727 5.04303 5.10023 5.29713 5.34488 5.38097 5.38244 5.46936 5.56136 5.86546 6.02213 6.15839 6.35881 6.74907 6.92740 6.95036 7.13342 7.19188 7.44012 7.71350 7.85554 7.90677 8.03063 8.46301 9.08113 9.64504 11.13540 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.021920 B = 0.004296 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.090103 B = 6515.711469 C = 7376.318075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.890 3.110 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.516 4.516 8 H 0.056 0.944 9 C 0.020 3.980 10 C -0.099 4.099 11 C -0.106 4.106 12 C 0.076 3.924 13 H 0.103 0.897 14 N -0.810 5.810 15 C 0.484 3.516 16 O -0.545 6.545 17 N -0.616 5.616 18 C 0.102 3.898 19 C -0.103 4.103 20 S -0.259 6.259 21 C -0.100 4.100 22 C 0.108 3.892 23 H 0.259 0.741 24 H 0.014 0.986 25 H 0.012 0.988 26 H 0.045 0.955 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.338 0.662 31 H 0.350 0.650 32 H 0.085 0.915 33 H 0.108 0.892 34 H 0.095 0.905 35 H 0.122 0.878 36 H 0.087 0.913 37 H 0.114 0.886 38 H 0.102 0.898 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.028 -18.685 6.051 19.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.555 4.555 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.137 4.137 11 C -0.144 4.144 12 C -0.040 4.040 13 H 0.120 0.880 14 N -0.339 5.339 15 C 0.272 3.728 16 O -0.422 6.422 17 N -0.350 5.350 18 C -0.022 4.022 19 C -0.252 4.252 20 S -0.032 6.032 21 C -0.249 4.249 22 C -0.017 4.017 23 H 0.069 0.931 24 H 0.032 0.968 25 H 0.030 0.970 26 H 0.064 0.936 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.151 0.849 31 H 0.165 0.835 32 H 0.104 0.896 33 H 0.125 0.875 34 H 0.114 0.886 35 H 0.140 0.860 36 H 0.106 0.894 37 H 0.132 0.868 38 H 0.121 0.879 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.488 -18.439 6.690 19.672 hybrid contribution 0.358 0.282 -1.095 1.186 sum 1.846 -18.157 5.596 19.089 Atomic orbital electron populations 1.69977 1.06063 1.26397 1.51239 1.25027 0.94814 0.99234 0.95442 0.86568 0.80190 0.83918 0.77529 1.19699 1.21063 1.21097 1.21303 0.93107 0.91043 1.50025 0.92591 1.19120 0.94063 0.91642 0.96912 1.21546 0.98777 0.92148 1.01241 1.21723 0.96586 0.94082 1.02001 1.21843 0.95955 0.90836 0.95357 0.87970 1.59045 1.17332 1.54281 1.03224 1.22696 0.78953 0.88916 0.82254 1.90660 1.57674 1.57290 1.36614 1.48103 1.56639 1.22324 1.07973 1.21933 0.96334 0.96350 0.87627 1.23944 0.97400 0.97753 1.06112 1.86886 1.67911 1.29336 1.19116 1.23843 1.00268 1.03640 0.97164 1.21630 0.90167 0.86119 1.03792 0.93141 0.96811 0.96992 0.93644 0.91732 0.91883 0.91956 0.84948 0.83526 0.89648 0.87451 0.88601 0.86027 0.89393 0.86769 0.87937 0.90107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 10 C -0.10 -1.95 5.04 -26.73 -0.13 -2.08 16 11 C -0.11 -1.67 4.57 -26.73 -0.12 -1.79 16 12 C 0.08 0.99 2.29 -68.86 -0.16 0.83 16 13 H 0.10 1.17 6.49 -51.93 -0.34 0.84 16 14 N -0.81 -10.71 8.44 -5.65 -0.05 -10.76 16 15 C 0.48 6.39 6.90 -10.99 -0.08 6.31 16 16 O -0.55 -8.70 15.55 5.55 0.09 -8.61 16 17 N -0.62 -6.65 2.79 -173.56 -0.48 -7.14 16 18 C 0.10 0.93 5.47 -3.98 -0.02 0.91 16 19 C -0.10 -1.01 6.52 37.28 0.24 -0.77 16 20 S -0.26 -2.70 22.29 -107.50 -2.40 -5.10 16 21 C -0.10 -0.93 6.67 37.30 0.25 -0.68 16 22 C 0.11 1.03 6.23 -3.96 -0.02 1.01 16 23 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 24 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.06 1.32 7.75 -51.93 -0.40 0.92 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.06 0.93 5.79 -51.93 -0.30 0.63 16 30 H 0.34 3.85 9.06 -39.30 -0.36 3.50 16 31 H 0.35 4.85 8.58 -39.29 -0.34 4.51 16 32 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.11 0.96 4.95 -51.93 -0.26 0.70 16 34 H 0.10 1.10 6.91 -51.93 -0.36 0.74 16 35 H 0.12 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.10 1.09 6.88 -51.92 -0.36 0.73 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 322.20 15.07 4.86 4.86 Total: -1.00 -32.02 322.20 -8.92 -40.94 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -6.05 Total: 4.68 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: -0.59 Total: -9.26 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: 0.20 Total: -44.11 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: 0.09 Total: -8.61 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -2.70 SS G_CDS: -2.40 Total: -5.10 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.02 -8.92 -40.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594430335.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.700 kcal (2) G-P(sol) polarization free energy of solvation -32.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds