Wall clock time and date at job start Mon Mar 30 2020 04:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00026 * 2 1 4 4 H 1.48494 * 109.47369 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47344 * 300.00523 * 3 2 1 6 6 H 1.48505 * 109.46860 * 60.00225 * 3 2 1 7 7 C 1.37876 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99906 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00052 * 359.97438 * 7 2 1 10 10 C 1.53008 * 109.46893 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46824 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46950 * 179.97438 * 11 10 9 13 13 H 1.09003 * 109.47158 * 55.00170 * 12 11 10 14 14 N 1.46901 * 109.47367 * 295.00048 * 12 11 10 15 15 C 1.50702 * 109.46900 * 174.99849 * 12 11 10 16 16 O 1.21284 * 119.99499 * 100.00196 * 15 12 11 17 17 N 1.34773 * 120.00429 * 280.00141 * 15 12 11 18 18 C 1.46387 * 119.64313 * 359.72789 * 17 15 12 19 19 C 1.53230 * 109.48999 * 115.19538 * 18 17 15 20 20 S 1.81737 * 108.80341 * 57.65011 * 19 18 17 21 21 C 1.81748 * 102.30630 * 305.46543 * 20 19 18 22 22 C 1.46376 * 119.65022 * 180.02562 * 17 15 12 23 23 H 0.96998 * 119.99825 * 359.97438 * 1 2 3 24 24 H 1.08993 * 109.47038 * 60.00710 * 9 7 2 25 25 H 1.09007 * 109.47068 * 300.00229 * 9 7 2 26 26 H 1.09001 * 109.46741 * 60.00607 * 10 9 7 27 27 H 1.08995 * 109.46793 * 299.99902 * 10 9 7 28 28 H 1.08999 * 109.46928 * 59.99985 * 11 10 9 29 29 H 1.08998 * 109.47334 * 300.00100 * 11 10 9 30 30 H 1.00893 * 111.00059 * 176.04467 * 14 12 11 31 31 H 1.00899 * 110.99723 * 300.00627 * 14 12 11 32 32 H 1.09004 * 109.46624 * 235.19847 * 18 17 15 33 33 H 1.08999 * 109.46689 * 355.18192 * 18 17 15 34 34 H 1.09003 * 109.57805 * 297.85770 * 19 18 17 35 35 H 1.08995 * 109.69529 * 177.51732 * 19 18 17 36 36 H 1.08998 * 109.57866 * 294.74177 * 21 20 19 37 37 H 1.09001 * 109.69623 * 174.40302 * 21 20 19 38 38 H 1.09007 * 109.46588 * 4.81242 * 22 17 15 39 39 H 1.09000 * 109.47186 * 124.80570 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4804 -4.9871 0.0001 12 6 2.4747 -6.1500 -0.0005 13 1 3.1594 -6.0431 0.8408 14 7 3.2369 -6.1419 -1.2563 15 6 1.7254 -7.4516 0.1240 16 8 1.5124 -8.1253 -0.8618 17 7 1.2919 -7.8670 1.3306 18 6 1.5585 -7.0506 2.5161 19 6 0.2341 -6.5418 3.0948 20 16 -0.8215 -7.9689 3.4847 21 6 -0.8715 -8.8581 1.9004 22 6 0.5654 -9.1327 1.4427 23 1 -0.4850 0.8400 0.0004 24 1 0.6242 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 2.8720 -3.6043 0.8895 27 1 2.8720 -3.6043 -0.8905 28 1 0.8535 -5.0451 -0.8896 29 1 0.8540 -5.0446 0.8903 30 1 3.9446 -6.8610 -1.2543 31 1 2.6241 -6.2397 -2.0519 32 1 2.0740 -7.6533 3.2638 33 1 2.1841 -6.2019 2.2395 34 1 -0.2651 -5.9076 2.3621 35 1 0.4255 -5.9700 4.0028 36 1 -1.3822 -8.2482 1.1552 37 1 -1.4017 -9.8022 2.0255 38 1 0.5492 -9.6294 0.4725 39 1 1.0625 -9.7738 2.1707 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594430335.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:58 Heat of formation + Delta-G solvation = -71.228519 kcal Electronic energy + Delta-G solvation = -19370.393247 eV Core-core repulsion = 16437.471776 eV Total energy + Delta-G solvation = -2932.921472 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.54063 -37.74393 -37.27019 -35.29504 -33.18406 -32.91861 -31.25262 -29.57259 -26.96767 -24.93674 -24.63880 -23.16273 -21.75265 -20.31420 -18.85699 -18.43956 -17.51479 -17.33446 -16.82876 -16.48048 -16.30030 -15.67272 -15.57153 -15.10747 -14.95640 -14.58024 -14.39445 -14.31329 -13.84881 -13.63043 -13.47327 -13.09608 -12.85902 -12.75280 -12.52182 -12.33589 -12.21125 -12.06056 -11.48455 -11.39743 -11.22226 -10.96940 -10.85777 -10.52000 -10.07890 -9.73633 -8.75838 -8.16686 -6.26872 0.66398 1.33153 1.41835 1.42780 1.43526 1.55854 1.82929 2.43972 3.17014 3.27376 3.55308 3.62537 3.79153 3.92109 3.97541 4.00698 4.10498 4.25193 4.32056 4.46155 4.57047 4.61205 4.66684 4.72073 4.78259 4.94954 5.11373 5.25290 5.31710 5.33892 5.61423 5.83960 5.93578 5.95790 6.14643 6.30733 6.43841 6.91064 6.91378 7.42586 8.95282 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.021920 B = 0.004296 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.090103 B = 6515.711469 C = 7376.318075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.002 4.002 3 Si 0.962 3.038 4 H -0.260 1.260 5 H -0.282 1.282 6 H -0.278 1.278 7 C -0.537 4.537 8 H 0.061 0.939 9 C 0.022 3.978 10 C -0.083 4.083 11 C -0.095 4.095 12 C 0.085 3.915 13 H 0.127 0.873 14 N -0.817 5.817 15 C 0.485 3.515 16 O -0.577 6.577 17 N -0.611 5.611 18 C 0.101 3.899 19 C -0.101 4.101 20 S -0.275 6.275 21 C -0.092 4.092 22 C 0.108 3.892 23 H 0.262 0.738 24 H -0.019 1.019 25 H -0.007 1.007 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.042 0.958 29 H 0.071 0.929 30 H 0.350 0.650 31 H 0.345 0.655 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.074 0.926 35 H 0.136 0.864 36 H 0.070 0.930 37 H 0.135 0.865 38 H 0.092 0.908 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.585 -19.143 7.253 20.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.199 4.199 3 Si 0.787 3.213 4 H -0.184 1.184 5 H -0.208 1.208 6 H -0.204 1.204 7 C -0.575 4.575 8 H 0.079 0.921 9 C -0.015 4.015 10 C -0.120 4.120 11 C -0.133 4.133 12 C -0.031 4.031 13 H 0.144 0.856 14 N -0.346 5.346 15 C 0.273 3.727 16 O -0.456 6.456 17 N -0.344 5.344 18 C -0.023 4.023 19 C -0.250 4.250 20 S -0.049 6.049 21 C -0.241 4.241 22 C -0.016 4.016 23 H 0.071 0.929 24 H 0.000 1.000 25 H 0.012 0.988 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.061 0.939 29 H 0.089 0.911 30 H 0.164 0.836 31 H 0.159 0.841 32 H 0.128 0.872 33 H 0.130 0.870 34 H 0.093 0.907 35 H 0.154 0.846 36 H 0.088 0.912 37 H 0.153 0.847 38 H 0.110 0.890 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.058 -18.913 7.923 20.732 hybrid contribution -0.185 0.408 -1.445 1.513 sum 2.872 -18.505 6.479 19.815 Atomic orbital electron populations 1.70109 1.07825 1.27528 1.52210 1.25960 0.95690 1.03292 0.94934 0.85446 0.79258 0.78998 0.77642 1.18413 1.20763 1.20352 1.21757 0.93602 0.92378 1.49738 0.92089 1.19046 0.94534 0.93490 0.94399 1.21280 0.97503 0.91769 1.01476 1.21507 0.96724 0.93516 1.01559 1.21702 0.95570 0.89583 0.96232 0.85568 1.59050 1.17546 1.54940 1.03073 1.22590 0.78886 0.88702 0.82553 1.90651 1.58964 1.58199 1.37803 1.48164 1.55726 1.22716 1.07779 1.22102 0.96030 0.96766 0.87371 1.23959 0.97443 0.97346 1.06252 1.86949 1.68473 1.29686 1.19783 1.23834 1.00230 1.04145 0.95939 1.21731 0.90329 0.85702 1.03878 0.92949 1.00032 0.98839 0.92161 0.92516 0.93882 0.91056 0.83621 0.84117 0.87151 0.86966 0.90700 0.84566 0.91159 0.84672 0.88973 0.87906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.13 13.29 21.45 0.28 -56.84 16 2 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 3 Si 0.96 44.17 29.54 68.60 2.03 46.19 16 4 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 7 C -0.54 -30.30 9.11 25.60 0.23 -30.07 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 9 C 0.02 1.16 4.97 29.85 0.15 1.31 16 10 C -0.08 -3.21 5.04 30.60 0.15 -3.05 16 11 C -0.09 -2.97 4.57 30.59 0.14 -2.83 16 12 C 0.08 2.08 2.29 44.17 0.10 2.18 16 13 H 0.13 2.52 6.49 -2.39 -0.02 2.51 16 14 N -0.82 -20.70 8.44 -171.80 -1.45 -22.15 16 15 C 0.49 12.21 6.90 87.66 0.61 12.82 16 16 O -0.58 -18.10 15.55 -3.04 -0.05 -18.14 16 17 N -0.61 -12.09 2.79 -821.41 -2.29 -14.38 16 18 C 0.10 1.58 5.47 86.48 0.47 2.06 16 19 C -0.10 -1.84 6.52 72.06 0.47 -1.37 16 20 S -0.28 -5.34 22.29 -56.49 -1.26 -6.60 16 21 C -0.09 -1.60 6.67 72.08 0.48 -1.12 16 22 C 0.11 1.88 6.23 86.50 0.54 2.42 16 23 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 24 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 25 H -0.01 -0.37 8.14 -2.38 -0.02 -0.39 16 26 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.06 2.29 7.75 -2.39 -0.02 2.27 16 28 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.07 2.10 5.79 -2.39 -0.01 2.08 16 30 H 0.35 7.44 9.06 -89.70 -0.81 6.62 16 31 H 0.35 9.48 8.58 -89.69 -0.77 8.71 16 32 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 33 H 0.11 1.67 4.95 -2.39 -0.01 1.66 16 34 H 0.07 1.69 6.91 -2.39 -0.02 1.67 16 35 H 0.14 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.14 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.09 1.86 6.88 -2.38 -0.02 1.85 16 39 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -69.22 322.20 0.55 -68.67 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: -0.52 Total: 20.54 kcal Atomic # 6 Polarization: -21.09 SS G_CDS: 3.81 Total: -17.29 kcal Atomic # 7 Polarization: -89.92 SS G_CDS: -3.46 Total: -93.37 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.05 Total: -18.14 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Atomic # 16 Polarization: -5.34 SS G_CDS: -1.26 Total: -6.60 kcal Total: -69.22 0.55 -68.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594430335.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.559 kcal (2) G-P(sol) polarization free energy of solvation -69.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds