Wall clock time and date at job start Mon Mar 30 2020 05:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47218 * 2 1 4 4 C 1.52998 * 109.46983 * 239.99686 * 2 1 3 5 5 N 1.46505 * 109.46658 * 65.00330 * 4 2 1 6 6 C 1.35310 * 125.86763 * 125.29510 * 5 4 2 7 7 C 1.35348 * 106.17503 * 180.17814 * 6 5 4 8 8 C 1.50700 * 126.75241 * 179.84708 * 7 6 5 9 9 C 1.50702 * 109.46869 * 124.71667 * 8 7 6 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99942 * 179.72213 * 9 8 7 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 8 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 8 14 14 H 1.48501 * 109.47188 * 90.00793 * 13 11 9 15 15 H 1.48501 * 109.47085 * 210.00372 * 13 11 9 16 16 H 1.48498 * 109.47634 * 330.00608 * 13 11 9 17 17 N 1.33770 * 106.49624 * 359.59617 * 7 6 5 18 18 N 1.28632 * 108.88455 * 0.25241 * 17 7 6 19 19 C 1.50697 * 109.46869 * 119.99925 * 2 1 3 20 20 C 1.38232 * 119.62235 * 34.72894 * 19 2 1 21 21 C 1.38627 * 119.16179 * 179.75133 * 20 19 2 22 22 C 1.38675 * 118.41842 * 0.50831 * 21 20 19 23 23 C 1.38176 * 119.16462 * 359.73412 * 22 21 20 24 24 N 1.31857 * 119.61576 * 214.99644 * 19 2 1 25 25 H 1.09004 * 109.47049 * 300.00126 * 1 2 3 26 26 H 1.08995 * 109.47275 * 59.99722 * 1 2 3 27 27 H 1.08998 * 109.47218 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47517 * 305.00264 * 4 2 1 29 29 H 1.08999 * 109.47139 * 184.99917 * 4 2 1 30 30 H 1.08000 * 126.91429 * 0.03609 * 6 5 4 31 31 H 1.09004 * 109.47210 * 4.71960 * 8 7 6 32 32 H 1.08994 * 109.47551 * 244.71612 * 8 7 6 33 33 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 34 34 H 1.08000 * 120.41743 * 359.97438 * 20 19 2 35 35 H 1.07999 * 120.78776 * 180.26298 * 21 20 19 36 36 H 1.07997 * 120.41463 * 179.70790 * 22 21 20 37 37 H 1.08004 * 119.61828 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6524 0.0354 -2.4423 6 6 2.4907 0.4751 -3.4092 7 6 1.7182 1.1241 -4.3114 8 6 2.1827 1.7999 -5.5758 9 6 1.4240 1.2410 -6.7518 10 1 0.6796 0.4736 -6.5990 11 6 1.6757 1.7139 -8.0224 12 7 2.5819 2.6487 -8.2084 13 14 0.7299 1.0266 -9.4791 14 1 -0.5011 1.8290 -9.6932 15 1 1.5796 1.0899 -10.6954 16 1 0.3593 -0.3854 -9.2072 17 7 0.4606 1.0430 -3.8628 18 7 0.4554 0.3918 -2.7535 19 6 2.0323 -0.7104 1.2305 20 6 1.3289 -1.7899 1.7311 21 6 1.8024 -2.4396 2.8605 22 6 2.9651 -1.9705 3.4530 23 6 3.6116 -0.8823 2.8988 24 7 3.1348 -0.2917 1.8202 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6054 -1.7199 -1.2951 29 1 3.1263 -0.7995 -1.2056 30 1 3.5611 0.3379 -3.4514 31 1 3.2491 1.6206 -5.7129 32 1 2.0010 2.8721 -5.5026 33 1 2.7593 2.9811 -9.1023 34 1 0.4239 -2.1252 1.2464 35 1 1.2760 -3.2884 3.2715 36 1 3.3601 -2.4494 4.3367 37 1 4.5175 -0.5106 3.3545 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594655590.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:16 Heat of formation + Delta-G solvation = 128.735176 kcal Electronic energy + Delta-G solvation = -19585.564273 eV Core-core repulsion = 16558.162678 eV Total energy + Delta-G solvation = -3027.401595 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.53383 -40.64757 -36.48866 -33.62100 -32.84356 -32.67355 -31.03084 -30.01397 -27.46785 -27.11079 -24.46021 -23.70050 -23.34503 -21.59890 -20.84966 -19.90246 -17.49715 -16.90726 -16.44586 -16.18200 -15.90640 -15.36316 -14.68835 -14.47506 -14.18410 -14.12570 -13.84697 -13.35322 -13.12656 -12.68948 -12.32866 -12.13293 -11.76038 -11.71321 -11.50188 -11.26893 -10.79889 -10.70963 -10.50095 -10.24435 -10.06081 -9.76539 -9.68116 -9.46760 -9.31139 -9.20675 -8.40545 -8.09039 -5.96204 -3.96575 0.71162 0.91930 2.24887 2.76610 3.38970 3.42524 3.43579 3.46838 3.54764 3.90912 4.32678 4.48108 4.51221 4.54315 4.61809 4.72235 4.78174 4.94081 5.12756 5.21687 5.27119 5.34890 5.41487 5.48731 5.70613 5.74197 5.82440 5.84683 5.98707 6.11541 6.30956 6.34852 6.38582 7.16217 7.25039 7.56975 7.65077 7.66261 8.01712 8.40553 9.06897 9.33541 9.66045 11.14970 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.047759 B = 0.003115 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.131933 B = 8985.459957 C = 9220.390052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.052 4.052 3 H 0.098 0.902 4 C 0.134 3.866 5 N -0.302 5.302 6 C -0.079 4.079 7 C 0.035 3.965 8 C 0.092 3.908 9 C -0.502 4.502 10 H 0.059 0.941 11 C 0.056 3.944 12 N -0.899 5.899 13 Si 0.897 3.103 14 H -0.280 1.280 15 H -0.287 1.287 16 H -0.275 1.275 17 N -0.262 5.262 18 N -0.108 5.108 19 C 0.138 3.862 20 C -0.165 4.165 21 C -0.074 4.074 22 C -0.178 4.178 23 C 0.101 3.899 24 N -0.480 5.480 25 H 0.056 0.944 26 H 0.100 0.900 27 H 0.059 0.941 28 H 0.093 0.907 29 H 0.102 0.898 30 H 0.181 0.819 31 H 0.036 0.964 32 H 0.039 0.961 33 H 0.261 0.739 34 H 0.140 0.860 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.998 -10.596 24.091 26.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.072 4.072 3 H 0.116 0.884 4 C 0.011 3.989 5 N -0.098 5.098 6 C -0.228 4.228 7 C -0.102 4.102 8 C 0.053 3.947 9 C -0.541 4.541 10 H 0.077 0.923 11 C -0.145 4.145 12 N -0.538 5.538 13 Si 0.725 3.275 14 H -0.206 1.206 15 H -0.213 1.213 16 H -0.200 1.200 17 N -0.129 5.129 18 N -0.086 5.086 19 C -0.001 4.001 20 C -0.184 4.184 21 C -0.100 4.100 22 C -0.197 4.197 23 C -0.056 4.056 24 N -0.189 5.189 25 H 0.075 0.925 26 H 0.118 0.882 27 H 0.078 0.922 28 H 0.111 0.889 29 H 0.120 0.880 30 H 0.198 0.802 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.158 0.842 35 H 0.153 0.847 36 H 0.152 0.848 37 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 1.054 -9.814 24.028 25.977 hybrid contribution 0.433 -1.246 -0.497 1.409 sum 1.487 -11.060 23.532 26.044 Atomic orbital electron populations 1.22194 0.92138 1.02946 1.04478 1.20287 0.97746 1.00230 0.88889 0.88370 1.21862 1.01603 0.94619 0.80809 1.47065 1.06445 1.38612 1.17665 1.23385 0.98943 1.07663 0.92763 1.23003 0.88510 0.99765 0.98964 1.17727 0.96530 0.95296 0.85138 1.21054 1.20941 1.21397 0.90722 0.92290 1.24977 0.95401 0.95139 0.98942 1.69950 1.32985 1.28678 1.22220 0.86512 0.79796 0.79462 0.81773 1.20565 1.21323 1.19952 1.75074 1.21173 1.13948 1.02660 1.78002 1.02976 1.15411 1.12202 1.21011 0.90754 0.92835 0.95465 1.22096 1.01756 0.96948 0.97623 1.21630 0.95256 0.98619 0.94534 1.22174 0.97002 0.98786 1.01773 1.22784 0.98904 0.92314 0.91608 1.67516 1.12195 1.29947 1.09213 0.92501 0.88188 0.92209 0.88887 0.88009 0.80187 0.94562 0.94297 0.92941 0.84197 0.84712 0.84771 0.82623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 8.32 37.16 0.31 -1.45 16 2 C -0.05 -0.57 2.90 -91.77 -0.27 -0.84 16 3 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 4 C 0.13 1.56 5.91 -4.04 -0.02 1.54 16 5 N -0.30 -5.03 3.44 -61.26 -0.21 -5.24 16 6 C -0.08 -1.46 11.49 -17.05 -0.20 -1.66 16 7 C 0.03 0.80 6.44 -82.78 -0.53 0.27 16 8 C 0.09 2.43 5.55 -29.03 -0.16 2.26 16 9 C -0.50 -14.62 9.09 -34.44 -0.31 -14.93 16 10 H 0.06 1.75 7.74 -52.49 -0.41 1.34 16 11 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 12 N -0.90 -26.88 13.29 55.43 0.74 -26.15 16 13 Si 0.90 22.27 29.54 -169.99 -5.02 17.25 16 14 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 15 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 16 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 17 N -0.26 -6.19 12.40 33.29 0.41 -5.78 16 18 N -0.11 -2.12 10.24 60.35 0.62 -1.50 16 19 C 0.14 1.40 5.79 -82.58 -0.48 0.92 16 20 C -0.16 -1.34 9.18 -39.44 -0.36 -1.71 16 21 C -0.07 -0.50 10.18 -39.28 -0.40 -0.90 16 22 C -0.18 -1.16 10.11 -39.44 -0.40 -1.56 16 23 C 0.10 0.83 11.18 -17.55 -0.20 0.63 16 24 N -0.48 -5.22 10.27 -9.47 -0.10 -5.32 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.10 1.40 5.49 -51.93 -0.29 1.12 16 27 H 0.06 0.56 6.49 -51.93 -0.34 0.22 16 28 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.10 1.03 8.07 -51.93 -0.42 0.61 16 30 H 0.18 2.70 8.06 -52.49 -0.42 2.28 16 31 H 0.04 0.95 8.12 -51.93 -0.42 0.53 16 32 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.14 0.94 6.30 -52.49 -0.33 0.61 16 35 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 36 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 37 H 0.16 0.88 8.06 -52.48 -0.42 0.46 16 LS Contribution 317.42 15.07 4.78 4.78 Total: -1.00 -34.04 317.42 -6.61 -40.65 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: -4.72 Total: -2.80 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: -3.12 Total: -15.90 kcal Atomic # 7 Polarization: -45.45 SS G_CDS: 1.46 Total: -43.99 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -34.04 -6.61 -40.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594655590.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.385 kcal (2) G-P(sol) polarization free energy of solvation -34.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds