Wall clock time and date at job start Mon Mar 30 2020 05:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47218 * 2 1 4 4 C 1.52998 * 109.46983 * 239.99686 * 2 1 3 5 5 N 1.46505 * 109.46658 * 65.00330 * 4 2 1 6 6 C 1.35310 * 125.86763 * 125.29510 * 5 4 2 7 7 C 1.35348 * 106.17503 * 180.17814 * 6 5 4 8 8 C 1.50700 * 126.75241 * 179.84708 * 7 6 5 9 9 C 1.50702 * 109.46869 * 124.71667 * 8 7 6 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99942 * 179.72213 * 9 8 7 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 8 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 8 14 14 H 1.48501 * 109.47188 * 90.00793 * 13 11 9 15 15 H 1.48501 * 109.47085 * 210.00372 * 13 11 9 16 16 H 1.48498 * 109.47634 * 330.00608 * 13 11 9 17 17 N 1.33770 * 106.49624 * 359.59617 * 7 6 5 18 18 N 1.28632 * 108.88455 * 0.25241 * 17 7 6 19 19 C 1.50697 * 109.46869 * 119.99925 * 2 1 3 20 20 C 1.38232 * 119.62235 * 34.72894 * 19 2 1 21 21 C 1.38627 * 119.16179 * 179.75133 * 20 19 2 22 22 C 1.38675 * 118.41842 * 0.50831 * 21 20 19 23 23 C 1.38176 * 119.16462 * 359.73412 * 22 21 20 24 24 N 1.31857 * 119.61576 * 214.99644 * 19 2 1 25 25 H 1.09004 * 109.47049 * 300.00126 * 1 2 3 26 26 H 1.08995 * 109.47275 * 59.99722 * 1 2 3 27 27 H 1.08998 * 109.47218 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47517 * 305.00264 * 4 2 1 29 29 H 1.08999 * 109.47139 * 184.99917 * 4 2 1 30 30 H 1.08000 * 126.91429 * 0.03609 * 6 5 4 31 31 H 1.09004 * 109.47210 * 4.71960 * 8 7 6 32 32 H 1.08994 * 109.47551 * 244.71612 * 8 7 6 33 33 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 34 34 H 1.08000 * 120.41743 * 359.97438 * 20 19 2 35 35 H 1.07999 * 120.78776 * 180.26298 * 21 20 19 36 36 H 1.07997 * 120.41463 * 179.70790 * 22 21 20 37 37 H 1.08004 * 119.61828 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6524 0.0354 -2.4423 6 6 2.4907 0.4751 -3.4092 7 6 1.7182 1.1241 -4.3114 8 6 2.1827 1.7999 -5.5758 9 6 1.4240 1.2410 -6.7518 10 1 0.6796 0.4736 -6.5990 11 6 1.6757 1.7139 -8.0224 12 7 2.5819 2.6487 -8.2084 13 14 0.7299 1.0266 -9.4791 14 1 -0.5011 1.8290 -9.6932 15 1 1.5796 1.0899 -10.6954 16 1 0.3593 -0.3854 -9.2072 17 7 0.4606 1.0430 -3.8628 18 7 0.4554 0.3918 -2.7535 19 6 2.0323 -0.7104 1.2305 20 6 1.3289 -1.7899 1.7311 21 6 1.8024 -2.4396 2.8605 22 6 2.9651 -1.9705 3.4530 23 6 3.6116 -0.8823 2.8988 24 7 3.1348 -0.2917 1.8202 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6054 -1.7199 -1.2951 29 1 3.1263 -0.7995 -1.2056 30 1 3.5611 0.3379 -3.4514 31 1 3.2491 1.6206 -5.7129 32 1 2.0010 2.8721 -5.5026 33 1 2.7593 2.9811 -9.1023 34 1 0.4239 -2.1252 1.2464 35 1 1.2760 -3.2884 3.2715 36 1 3.3601 -2.4494 4.3367 37 1 4.5175 -0.5106 3.3545 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594655590.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:16 Heat of formation + Delta-G solvation = 106.796281 kcal Electronic energy + Delta-G solvation = -19586.515615 eV Core-core repulsion = 16558.162678 eV Total energy + Delta-G solvation = -3028.352937 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.07207 -41.27995 -37.50579 -35.52170 -34.12803 -33.40570 -32.85984 -30.80374 -29.29858 -28.27094 -25.43921 -25.23578 -24.28123 -22.83574 -22.18912 -21.22214 -18.64188 -18.21611 -17.70048 -17.32630 -17.00880 -16.54500 -16.14283 -15.70558 -15.34900 -15.05224 -14.77157 -14.38985 -14.31876 -13.95517 -13.88264 -13.65212 -13.27152 -12.80066 -12.67961 -12.58319 -12.49918 -12.17095 -12.01076 -11.79553 -11.63233 -11.35970 -10.90181 -10.76478 -10.57494 -10.37428 -9.95663 -9.81814 -8.17742 -6.26467 0.11772 0.36982 0.77435 1.40987 1.43385 1.52228 1.54751 1.78340 2.45463 2.80778 3.14974 3.20064 3.46817 3.60783 3.75766 3.92449 4.02435 4.10803 4.17432 4.26271 4.27406 4.43752 4.44917 4.48714 4.68497 4.82486 4.83472 4.92739 5.01659 5.23111 5.26707 5.31190 5.37618 5.51071 5.55578 5.77886 5.78382 5.88608 6.23394 6.82018 7.04369 7.40101 7.72963 8.93364 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.047759 B = 0.003115 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.131933 B = 8985.459957 C = 9220.390052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.042 4.042 3 H 0.074 0.926 4 C 0.126 3.874 5 N -0.284 5.284 6 C -0.055 4.055 7 C -0.006 4.006 8 C 0.102 3.898 9 C -0.522 4.522 10 H 0.046 0.954 11 C 0.007 3.993 12 N -0.928 5.928 13 Si 0.963 3.037 14 H -0.276 1.276 15 H -0.274 1.274 16 H -0.270 1.270 17 N -0.309 5.309 18 N -0.103 5.103 19 C 0.120 3.880 20 C -0.168 4.168 21 C -0.075 4.075 22 C -0.169 4.169 23 C 0.085 3.915 24 N -0.514 5.514 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.117 0.883 29 H 0.123 0.877 30 H 0.219 0.781 31 H 0.032 0.968 32 H 0.007 0.993 33 H 0.266 0.734 34 H 0.153 0.847 35 H 0.164 0.836 36 H 0.165 0.835 37 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.330 -13.140 25.889 29.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.062 4.062 3 H 0.092 0.908 4 C 0.005 3.995 5 N -0.079 5.079 6 C -0.205 4.205 7 C -0.144 4.144 8 C 0.063 3.937 9 C -0.561 4.561 10 H 0.064 0.936 11 C -0.191 4.191 12 N -0.569 5.569 13 Si 0.788 3.212 14 H -0.201 1.201 15 H -0.199 1.199 16 H -0.195 1.195 17 N -0.175 5.175 18 N -0.082 5.082 19 C -0.018 4.018 20 C -0.187 4.187 21 C -0.101 4.101 22 C -0.189 4.189 23 C -0.072 4.072 24 N -0.223 5.223 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.098 0.902 28 H 0.135 0.865 29 H 0.141 0.859 30 H 0.235 0.765 31 H 0.051 0.949 32 H 0.025 0.975 33 H 0.075 0.925 34 H 0.170 0.830 35 H 0.182 0.818 36 H 0.182 0.818 37 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 1.377 -12.369 25.859 28.698 hybrid contribution 0.386 -0.506 -0.836 1.051 sum 1.762 -12.875 25.023 28.196 Atomic orbital electron populations 1.22118 0.92236 1.03817 1.03129 1.20101 0.97554 0.99072 0.89507 0.90778 1.22367 1.03226 0.94969 0.78899 1.47437 1.05276 1.37060 1.18166 1.23717 1.00233 1.05164 0.91368 1.22612 0.89615 1.02609 0.99535 1.17383 0.96018 0.93711 0.86571 1.21291 1.21125 1.21472 0.92207 0.93587 1.25818 0.96254 0.95341 1.01713 1.70049 1.34084 1.29559 1.23162 0.85476 0.78513 0.78805 0.78402 1.20141 1.19947 1.19469 1.74991 1.22099 1.16024 1.04430 1.77951 1.04220 1.15080 1.10915 1.20780 0.91581 0.93959 0.95489 1.22261 1.01933 0.96341 0.98189 1.22034 0.95258 0.99033 0.93756 1.22536 0.96442 0.97744 1.02130 1.23199 0.99776 0.92981 0.91206 1.67427 1.13008 1.31250 1.10662 0.91901 0.91332 0.90219 0.86480 0.85883 0.76472 0.94948 0.97468 0.92510 0.82958 0.81812 0.81777 0.80893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.29 8.32 71.98 0.60 -2.69 16 2 C -0.04 -0.90 2.90 -11.54 -0.03 -0.93 16 3 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 4 C 0.13 2.67 5.91 86.38 0.51 3.18 16 5 N -0.28 -9.18 3.44 -347.73 -1.20 -10.38 16 6 C -0.06 -1.99 11.49 83.49 0.96 -1.03 16 7 C -0.01 -0.28 6.44 41.60 0.27 -0.01 16 8 C 0.10 5.62 5.55 29.10 0.16 5.78 16 9 C -0.52 -31.32 9.09 25.60 0.23 -31.08 16 10 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 11 C 0.01 0.40 5.46 84.66 0.46 0.86 16 12 N -0.93 -56.49 13.29 21.45 0.28 -56.20 16 13 Si 0.96 46.08 29.54 68.60 2.03 48.10 16 14 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 15 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 16 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 17 N -0.31 -15.09 12.40 -48.60 -0.60 -15.69 16 18 N -0.10 -4.09 10.24 37.02 0.38 -3.72 16 19 C 0.12 2.22 5.79 42.55 0.25 2.47 16 20 C -0.17 -2.27 9.18 22.36 0.21 -2.06 16 21 C -0.08 -0.73 10.18 22.47 0.23 -0.50 16 22 C -0.17 -1.62 10.11 22.36 0.23 -1.40 16 23 C 0.09 1.21 11.18 84.67 0.95 2.15 16 24 N -0.51 -10.46 10.27 -183.88 -1.89 -12.35 16 25 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 26 H 0.07 1.93 5.49 -2.39 -0.01 1.92 16 27 H 0.08 1.33 6.49 -2.39 -0.02 1.31 16 28 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.12 2.16 8.07 -2.39 -0.02 2.14 16 30 H 0.22 6.02 8.06 -2.91 -0.02 6.00 16 31 H 0.03 1.76 8.12 -2.38 -0.02 1.74 16 32 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.27 15.13 8.31 -92.70 -0.77 14.36 16 34 H 0.15 1.57 6.30 -2.91 -0.02 1.55 16 35 H 0.16 0.61 8.06 -2.91 -0.02 0.58 16 36 H 0.16 0.54 8.06 -2.91 -0.02 0.51 16 37 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16 Total: -1.00 -76.49 317.42 5.09 -71.40 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: 1.07 Total: 4.08 kcal Atomic # 6 Polarization: -30.27 SS G_CDS: 5.01 Total: -25.26 kcal Atomic # 7 Polarization: -95.31 SS G_CDS: -3.02 Total: -98.33 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.10 kcal Total: -76.49 5.09 -71.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594655590.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.201 kcal (2) G-P(sol) polarization free energy of solvation -76.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds