Wall clock time and date at job start Mon Mar 30 2020 05:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47199 * 2 1 4 4 H 1.08999 * 109.49675 * 305.05251 * 3 2 1 5 5 C 1.53239 * 109.48989 * 184.99957 * 3 2 1 6 6 N 1.47080 * 108.51825 * 186.18382 * 5 3 2 7 7 C 1.34775 * 120.88181 * 231.18483 * 6 5 3 8 8 O 1.21284 * 120.00295 * 0.02562 * 7 6 5 9 9 C 1.50708 * 119.99957 * 179.97438 * 7 6 5 10 10 S 1.80998 * 109.47052 * 180.02562 * 9 7 6 11 11 C 1.76199 * 100.00013 * 180.02562 * 10 9 7 12 12 H 1.07991 * 119.99794 * 0.02562 * 11 10 9 13 13 C 1.38798 * 119.99771 * 180.02562 * 11 10 9 14 14 N 1.31633 * 120.00311 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99653 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47055 * 180.02562 * 15 13 11 17 17 H 1.48508 * 109.47016 * 299.99635 * 15 13 11 18 18 H 1.48495 * 109.47483 * 59.99992 * 15 13 11 19 19 C 1.47077 * 118.23888 * 51.46153 * 6 5 3 20 20 C 1.53698 * 108.27472 * 308.48044 * 19 6 5 21 21 H 1.08991 * 109.65078 * 294.07719 * 20 19 6 22 22 C 1.53005 * 109.44097 * 173.95866 * 20 19 6 23 23 N 1.46898 * 109.51411 * 65.12135 * 3 2 1 24 24 H 1.08995 * 109.47412 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46796 * 299.99866 * 1 2 3 26 26 H 1.09002 * 109.47099 * 59.99668 * 1 2 3 27 27 H 1.09003 * 109.46796 * 240.00133 * 2 1 3 28 28 H 1.08993 * 109.46823 * 120.00318 * 2 1 3 29 29 H 1.08998 * 109.62839 * 66.48020 * 5 3 2 30 30 H 1.08992 * 109.63277 * 305.89362 * 5 3 2 31 31 H 1.09005 * 109.46512 * 60.00633 * 9 7 6 32 32 H 1.08991 * 109.47135 * 300.00153 * 9 7 6 33 33 H 0.97001 * 119.99662 * 359.97438 * 14 13 11 34 34 H 1.09002 * 109.62793 * 68.24645 * 19 6 5 35 35 H 1.08999 * 109.63183 * 188.83276 * 19 6 5 36 36 H 1.08998 * 109.47348 * 300.26333 * 22 20 19 37 37 H 1.08991 * 109.47280 * 60.27470 * 22 20 19 38 38 H 1.09006 * 109.46693 * 180.26821 * 22 20 19 39 39 H 1.00908 * 110.99851 * 58.92525 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6050 1.9822 -0.8411 5 6 3.5673 1.4448 -0.1259 6 7 4.0464 2.8271 0.0257 7 6 4.8811 3.3732 -0.8806 8 8 5.2467 2.7235 -1.8373 9 6 5.3593 4.7917 -0.7060 10 16 6.4579 5.2309 -2.0757 11 6 6.8559 6.8883 -1.6294 12 1 6.4390 7.3207 -0.7319 13 6 7.7052 7.6381 -2.4312 14 7 8.2130 7.1112 -3.5254 15 14 8.1276 9.3950 -1.9576 16 1 9.0455 9.9738 -2.9713 17 1 6.8838 10.2041 -1.8974 18 1 8.7888 9.4039 -0.6280 19 6 3.5954 3.5955 1.1958 20 6 2.0624 3.5105 1.2666 21 1 1.6269 4.0213 0.4079 22 6 1.5746 4.1734 2.5564 23 7 1.6545 2.0993 1.2561 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.8545 1.0632 -1.1057 30 1 4.0000 0.8196 0.6550 31 1 5.9001 4.8793 0.2364 32 1 4.5026 5.4654 -0.6974 33 1 7.9939 6.1987 -3.7711 34 1 4.0308 3.1730 2.1014 35 1 3.9011 4.6364 1.0904 36 1 2.0109 3.6628 3.4149 37 1 1.8773 5.2204 2.5638 38 1 0.4877 4.1091 2.6093 39 1 2.0325 1.6076 2.0521 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598536760.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:53 Heat of formation + Delta-G solvation = -49.577936 kcal Electronic energy + Delta-G solvation = -19136.517773 eV Core-core repulsion = 16204.535141 eV Total energy + Delta-G solvation = -2931.982632 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.29541 -38.04884 -34.92233 -33.75926 -32.55082 -30.88922 -29.42199 -27.45089 -26.01379 -24.87856 -23.56455 -21.39123 -21.01677 -19.35528 -18.24117 -16.85325 -16.06581 -16.00648 -15.66480 -14.89708 -14.47150 -14.37033 -14.06694 -13.86030 -13.61196 -13.47008 -13.14855 -12.49426 -12.36333 -12.32565 -12.10184 -12.03959 -11.97779 -11.66224 -11.44990 -11.21930 -11.02349 -10.95843 -10.93688 -10.19073 -9.59402 -9.57301 -9.27079 -9.03556 -8.25455 -8.21144 -6.70450 -6.64503 -4.02821 2.73271 2.89520 3.29320 3.36225 3.39623 3.56193 3.83627 4.21842 4.45589 4.62605 4.65861 4.79582 4.87559 4.93692 5.04436 5.14818 5.20156 5.23590 5.34302 5.38763 5.42427 5.52913 5.59643 5.65111 5.69359 5.72744 5.79772 5.81660 5.92009 5.94108 5.99970 6.15048 6.44842 6.73656 7.10498 7.39288 7.88813 8.39886 8.47627 9.24726 10.79396 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.030903 B = 0.004066 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.843284 B = 6884.731593 C = 7562.776432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.113 4.113 3 C 0.075 3.925 4 H 0.086 0.914 5 C 0.080 3.920 6 N -0.621 5.621 7 C 0.534 3.466 8 O -0.517 6.517 9 C -0.127 4.127 10 S -0.116 6.116 11 C -0.608 4.608 12 H 0.065 0.935 13 C 0.036 3.964 14 N -0.883 5.883 15 Si 1.084 2.916 16 H -0.277 1.277 17 H -0.285 1.285 18 H -0.285 1.285 19 C 0.074 3.926 20 C 0.070 3.930 21 H 0.087 0.913 22 C -0.142 4.142 23 N -0.672 5.672 24 H 0.047 0.953 25 H 0.065 0.935 26 H 0.050 0.950 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.096 0.904 30 H 0.062 0.938 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.278 0.722 34 H 0.067 0.933 35 H 0.093 0.907 36 H 0.055 0.945 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.983 -10.343 13.130 22.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.151 4.151 3 C -0.036 4.036 4 H 0.104 0.896 5 C -0.045 4.045 6 N -0.357 5.357 7 C 0.322 3.678 8 O -0.391 6.391 9 C -0.278 4.278 10 S 0.110 5.890 11 C -0.756 4.756 12 H 0.084 0.916 13 C -0.175 4.175 14 N -0.517 5.517 15 Si 0.910 3.090 16 H -0.202 1.202 17 H -0.211 1.211 18 H -0.211 1.211 19 C -0.051 4.051 20 C -0.040 4.040 21 H 0.105 0.895 22 C -0.200 4.200 23 N -0.302 5.302 24 H 0.066 0.934 25 H 0.084 0.916 26 H 0.069 0.931 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.115 0.885 30 H 0.081 0.919 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.112 0.888 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -14.198 -9.852 10.989 20.480 hybrid contribution -0.294 -0.512 1.938 2.026 sum -14.492 -10.364 12.927 22.013 Atomic orbital electron populations 1.21644 0.94881 1.00887 1.02576 1.21478 0.97009 0.94477 1.02133 1.21999 0.92395 0.95806 0.93392 0.89594 1.22321 0.95177 0.83033 1.03946 1.48114 1.48605 1.13908 1.25104 1.20330 0.77431 0.88536 0.81488 1.90691 1.55666 1.62871 1.29849 1.23326 1.03860 0.94807 1.05792 1.84833 1.57476 1.17280 1.29405 1.23689 1.38240 0.98109 1.15554 0.91633 1.26066 0.92648 1.05656 0.93128 1.70803 1.41082 1.17163 1.22681 0.83330 0.76620 0.73123 0.75927 1.20244 1.21104 1.21121 1.22649 0.96168 0.98027 0.88290 1.22032 0.92181 0.89847 0.99982 0.89495 1.21742 1.02135 1.00329 0.95783 1.60740 1.63122 1.02124 1.04197 0.93357 0.91555 0.93069 0.91318 0.91921 0.88523 0.91926 0.89100 0.89041 0.90987 0.91454 0.88850 0.92556 0.91678 0.91418 0.84364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.80 37.16 0.36 -0.75 16 2 C -0.11 -0.91 5.57 -26.73 -0.15 -1.06 16 3 C 0.07 0.74 2.56 -67.59 -0.17 0.57 16 4 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 5 C 0.08 0.98 5.86 -3.60 -0.02 0.95 16 6 N -0.62 -8.96 3.00 -172.18 -0.52 -9.48 16 7 C 0.53 10.37 7.73 -10.98 -0.08 10.28 16 8 O -0.52 -11.96 15.32 5.55 0.09 -11.88 16 9 C -0.13 -2.63 4.52 36.01 0.16 -2.46 16 10 S -0.12 -3.17 19.60 -107.50 -2.11 -5.28 16 11 C -0.61 -17.60 9.50 30.94 0.29 -17.30 16 12 H 0.07 1.81 7.80 -52.49 -0.41 1.40 16 13 C 0.04 1.04 5.49 -17.43 -0.10 0.94 16 14 N -0.88 -27.61 13.67 55.49 0.76 -26.85 16 15 Si 1.08 24.92 29.92 -169.99 -5.09 19.83 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 18 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 19 C 0.07 0.82 5.79 -3.36 -0.02 0.80 16 20 C 0.07 0.66 3.18 -67.35 -0.21 0.45 16 21 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 22 C -0.14 -1.04 9.48 37.16 0.35 -0.69 16 23 N -0.67 -5.91 5.58 -99.23 -0.55 -6.46 16 24 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.07 0.54 7.76 -51.93 -0.40 0.14 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.10 1.38 7.06 -51.93 -0.37 1.01 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.09 1.76 7.99 -51.91 -0.41 1.35 16 32 H 0.09 1.76 7.67 -51.92 -0.40 1.37 16 33 H 0.28 8.87 7.12 -40.82 -0.29 8.58 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.09 1.07 6.02 -51.93 -0.31 0.76 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.34 2.62 8.73 -39.29 -0.34 2.27 16 LS Contribution 327.60 15.07 4.94 4.94 Total: -1.00 -33.88 327.60 -8.45 -42.33 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -6.38 Total: 1.12 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: 0.42 Total: -8.27 kcal Atomic # 7 Polarization: -42.48 SS G_CDS: -0.31 Total: -42.79 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.09 Total: -11.88 kcal Atomic # 14 Polarization: 24.92 SS G_CDS: -5.09 Total: 19.83 kcal Atomic # 16 Polarization: -3.17 SS G_CDS: -2.11 Total: -5.28 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.88 -8.45 -42.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598536760.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.252 kcal (2) G-P(sol) polarization free energy of solvation -33.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds