Wall clock time and date at job start Mon Mar 30 2020 05:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47199 * 2 1 4 4 H 1.08999 * 109.49675 * 305.05251 * 3 2 1 5 5 C 1.53239 * 109.48989 * 184.99957 * 3 2 1 6 6 N 1.47080 * 108.51825 * 186.18382 * 5 3 2 7 7 C 1.34775 * 120.88181 * 231.18483 * 6 5 3 8 8 O 1.21284 * 120.00295 * 0.02562 * 7 6 5 9 9 C 1.50708 * 119.99957 * 179.97438 * 7 6 5 10 10 S 1.80998 * 109.47052 * 180.02562 * 9 7 6 11 11 C 1.76199 * 100.00013 * 180.02562 * 10 9 7 12 12 H 1.07991 * 119.99794 * 0.02562 * 11 10 9 13 13 C 1.38798 * 119.99771 * 180.02562 * 11 10 9 14 14 N 1.31633 * 120.00311 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99653 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47055 * 180.02562 * 15 13 11 17 17 H 1.48508 * 109.47016 * 299.99635 * 15 13 11 18 18 H 1.48495 * 109.47483 * 59.99992 * 15 13 11 19 19 C 1.47077 * 118.23888 * 51.46153 * 6 5 3 20 20 C 1.53698 * 108.27472 * 308.48044 * 19 6 5 21 21 H 1.08991 * 109.65078 * 294.07719 * 20 19 6 22 22 C 1.53005 * 109.44097 * 173.95866 * 20 19 6 23 23 N 1.46898 * 109.51411 * 65.12135 * 3 2 1 24 24 H 1.08995 * 109.47412 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46796 * 299.99866 * 1 2 3 26 26 H 1.09002 * 109.47099 * 59.99668 * 1 2 3 27 27 H 1.09003 * 109.46796 * 240.00133 * 2 1 3 28 28 H 1.08993 * 109.46823 * 120.00318 * 2 1 3 29 29 H 1.08998 * 109.62839 * 66.48020 * 5 3 2 30 30 H 1.08992 * 109.63277 * 305.89362 * 5 3 2 31 31 H 1.09005 * 109.46512 * 60.00633 * 9 7 6 32 32 H 1.08991 * 109.47135 * 300.00153 * 9 7 6 33 33 H 0.97001 * 119.99662 * 359.97438 * 14 13 11 34 34 H 1.09002 * 109.62793 * 68.24645 * 19 6 5 35 35 H 1.08999 * 109.63183 * 188.83276 * 19 6 5 36 36 H 1.08998 * 109.47348 * 300.26333 * 22 20 19 37 37 H 1.08991 * 109.47280 * 60.27470 * 22 20 19 38 38 H 1.09006 * 109.46693 * 180.26821 * 22 20 19 39 39 H 1.00908 * 110.99851 * 58.92525 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6050 1.9822 -0.8411 5 6 3.5673 1.4448 -0.1259 6 7 4.0464 2.8271 0.0257 7 6 4.8811 3.3732 -0.8806 8 8 5.2467 2.7235 -1.8373 9 6 5.3593 4.7917 -0.7060 10 16 6.4579 5.2309 -2.0757 11 6 6.8559 6.8883 -1.6294 12 1 6.4390 7.3207 -0.7319 13 6 7.7052 7.6381 -2.4312 14 7 8.2130 7.1112 -3.5254 15 14 8.1276 9.3950 -1.9576 16 1 9.0455 9.9738 -2.9713 17 1 6.8838 10.2041 -1.8974 18 1 8.7888 9.4039 -0.6280 19 6 3.5954 3.5955 1.1958 20 6 2.0624 3.5105 1.2666 21 1 1.6269 4.0213 0.4079 22 6 1.5746 4.1734 2.5564 23 7 1.6545 2.0993 1.2561 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.8545 1.0632 -1.1057 30 1 4.0000 0.8196 0.6550 31 1 5.9001 4.8793 0.2364 32 1 4.5026 5.4654 -0.6974 33 1 7.9939 6.1987 -3.7711 34 1 4.0308 3.1730 2.1014 35 1 3.9011 4.6364 1.0904 36 1 2.0109 3.6628 3.4149 37 1 1.8773 5.2204 2.5638 38 1 0.4877 4.1091 2.6093 39 1 2.0325 1.6076 2.0521 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598536760.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:52 Heat of formation + Delta-G solvation = -73.210496 kcal Electronic energy + Delta-G solvation = -19137.542557 eV Core-core repulsion = 16204.535141 eV Total energy + Delta-G solvation = -2933.007417 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.48628 -39.28727 -35.84355 -34.82165 -34.74808 -31.95772 -30.62103 -28.35591 -27.19810 -26.90310 -24.49480 -22.26058 -21.78104 -20.88147 -20.11068 -18.31495 -17.47583 -16.95547 -16.78309 -16.31471 -15.75868 -15.69981 -15.35004 -15.02422 -14.94336 -14.53298 -14.43002 -14.02328 -13.93997 -13.69315 -13.18419 -13.00221 -12.76791 -12.75167 -12.54736 -12.29560 -11.96958 -11.96125 -11.73801 -11.67460 -11.57580 -11.12138 -11.10821 -10.40538 -10.33050 -9.17799 -8.95467 -8.92212 -6.31780 1.09330 1.36609 1.50232 1.59665 1.79657 1.88270 2.31530 2.99839 3.03618 3.07188 3.45914 3.63204 3.82889 3.91865 4.02050 4.03476 4.08284 4.21980 4.30305 4.38671 4.50920 4.57141 4.63646 4.69926 4.81752 4.95029 4.96945 5.10819 5.17583 5.30145 5.32746 5.37406 5.52208 5.60669 5.93332 6.06517 6.11763 6.44303 6.93283 7.03473 8.47898 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.030903 B = 0.004066 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.843284 B = 6884.731593 C = 7562.776432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.108 4.108 3 C 0.086 3.914 4 H 0.063 0.937 5 C 0.077 3.923 6 N -0.609 5.609 7 C 0.531 3.469 8 O -0.566 6.566 9 C -0.102 4.102 10 S -0.196 6.196 11 C -0.614 4.614 12 H 0.076 0.924 13 C -0.018 4.018 14 N -0.912 5.912 15 Si 1.137 2.863 16 H -0.280 1.280 17 H -0.262 1.262 18 H -0.262 1.262 19 C 0.067 3.933 20 C 0.077 3.923 21 H 0.068 0.932 22 C -0.134 4.134 23 N -0.663 5.663 24 H 0.059 0.941 25 H 0.065 0.935 26 H 0.040 0.960 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.260 0.740 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.377 -10.021 16.199 25.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.146 4.146 3 C -0.025 4.025 4 H 0.082 0.918 5 C -0.047 4.047 6 N -0.342 5.342 7 C 0.318 3.682 8 O -0.444 6.444 9 C -0.253 4.253 10 S 0.031 5.969 11 C -0.761 4.761 12 H 0.094 0.906 13 C -0.222 4.222 14 N -0.548 5.548 15 Si 0.954 3.046 16 H -0.205 1.205 17 H -0.187 1.187 18 H -0.187 1.187 19 C -0.057 4.057 20 C -0.035 4.035 21 H 0.086 0.914 22 C -0.192 4.192 23 N -0.294 5.294 24 H 0.078 0.922 25 H 0.084 0.916 26 H 0.059 0.941 27 H 0.085 0.915 28 H 0.098 0.902 29 H 0.090 0.910 30 H 0.104 0.896 31 H 0.127 0.873 32 H 0.126 0.874 33 H 0.071 0.929 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -15.649 -9.565 14.126 23.150 hybrid contribution 0.031 -0.723 1.073 1.294 sum -15.619 -10.288 15.199 24.099 Atomic orbital electron populations 1.21603 0.94448 1.01500 1.02018 1.21456 0.97232 0.93012 1.02895 1.21862 0.90319 0.96997 0.93330 0.91845 1.22543 0.96947 0.81758 1.03426 1.48136 1.46531 1.14906 1.24640 1.20131 0.78239 0.87894 0.81917 1.90674 1.57965 1.63691 1.32109 1.23192 1.02792 0.96239 1.03064 1.85084 1.60061 1.17780 1.34008 1.24021 1.37990 0.98380 1.15758 0.90579 1.27880 0.92094 1.09881 0.92301 1.70923 1.42863 1.16507 1.24466 0.82718 0.77426 0.67932 0.76487 1.20528 1.18688 1.18658 1.22996 0.97562 0.97625 0.87509 1.21984 0.90651 0.90195 1.00621 0.91376 1.21688 1.02294 1.00447 0.94780 1.60718 1.62807 1.01884 1.04013 0.92183 0.91617 0.94084 0.91518 0.90233 0.91021 0.89648 0.87326 0.87450 0.92912 0.88929 0.89127 0.91053 0.91307 0.91167 0.82953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.80 71.98 0.71 -1.18 16 2 C -0.11 -1.52 5.57 30.60 0.17 -1.35 16 3 C 0.09 1.59 2.56 44.99 0.11 1.70 16 4 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 5 C 0.08 1.80 5.86 86.35 0.51 2.31 16 6 N -0.61 -16.87 3.00 -817.05 -2.45 -19.33 16 7 C 0.53 20.70 7.73 87.66 0.68 21.38 16 8 O -0.57 -27.18 15.32 -3.04 -0.05 -27.23 16 9 C -0.10 -4.17 4.52 71.24 0.32 -3.85 16 10 S -0.20 -11.01 19.60 -56.49 -1.11 -12.12 16 11 C -0.61 -35.65 9.50 67.95 0.65 -35.00 16 12 H 0.08 4.12 7.80 -2.92 -0.02 4.09 16 13 C -0.02 -1.08 5.49 84.86 0.47 -0.61 16 14 N -0.91 -58.41 13.67 21.65 0.30 -58.11 16 15 Si 1.14 49.17 29.92 68.60 2.05 51.22 16 16 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 17 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 18 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 19 C 0.07 1.30 5.79 86.50 0.50 1.80 16 20 C 0.08 1.25 3.18 45.15 0.14 1.39 16 21 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 22 C -0.13 -1.52 9.48 71.98 0.68 -0.84 16 23 N -0.66 -9.88 5.58 -467.86 -2.61 -12.49 16 24 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.06 0.91 7.76 -2.39 -0.02 0.90 16 26 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.07 2.08 7.06 -2.39 -0.02 2.07 16 30 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.11 4.06 7.99 -2.39 -0.02 4.04 16 32 H 0.11 4.05 7.67 -2.40 -0.02 4.03 16 33 H 0.26 17.34 7.12 -92.71 -0.66 16.68 16 34 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.09 1.85 6.02 -2.39 -0.01 1.84 16 36 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 39 H 0.35 4.06 8.73 -89.69 -0.78 3.27 16 Total: -1.00 -76.27 327.60 1.42 -74.85 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: 0.35 Total: 17.46 kcal Atomic # 6 Polarization: -19.19 SS G_CDS: 4.94 Total: -14.26 kcal Atomic # 7 Polarization: -85.16 SS G_CDS: -4.77 Total: -89.93 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: -0.05 Total: -27.23 kcal Atomic # 14 Polarization: 49.17 SS G_CDS: 2.05 Total: 51.22 kcal Atomic # 16 Polarization: -11.01 SS G_CDS: -1.11 Total: -12.12 kcal Total: -76.27 1.42 -74.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598536760.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.641 kcal (2) G-P(sol) polarization free energy of solvation -76.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds