Wall clock time and date at job start Mon Mar 30 2020 05:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46906 * 110.99573 * 2 1 4 4 C 1.50701 * 109.46965 * 293.95399 * 3 2 1 5 5 H 1.08005 * 120.00268 * 359.97438 * 4 3 2 6 6 C 1.37875 * 119.99915 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00548 * 180.02562 * 6 4 3 8 8 Si 1.86803 * 119.99807 * 359.97438 * 6 4 3 9 9 H 1.48503 * 109.47278 * 90.00449 * 8 6 4 10 10 H 1.48502 * 109.46981 * 210.00137 * 8 6 4 11 11 H 1.48498 * 109.47192 * 330.00330 * 8 6 4 12 12 C 1.38510 * 111.00311 * 123.95279 * 2 1 3 13 13 N 1.31916 * 120.27960 * 235.77845 * 12 2 1 14 14 C 1.33727 * 121.14671 * 179.69201 * 13 12 2 15 15 C 1.34718 * 121.48058 * 0.60052 * 14 13 12 16 16 N 1.37121 * 119.93408 * 359.70170 * 15 14 13 17 17 N 1.39758 * 133.54288 * 180.02562 * 16 15 14 18 18 C 1.31598 * 108.81944 * 179.97438 * 17 16 15 19 19 C 1.50707 * 125.50835 * 179.97438 * 18 17 16 20 20 C 1.53008 * 117.49736 * 163.74836 * 19 18 17 21 21 C 1.52998 * 117.49924 * 95.08819 * 19 18 17 22 22 C 1.38622 * 108.98072 * 0.02562 * 18 17 16 23 23 C 1.37249 * 118.93052 * 359.97438 * 16 15 14 24 24 H 1.09004 * 109.47457 * 60.00221 * 1 2 3 25 25 H 1.09001 * 109.46615 * 179.97438 * 1 2 3 26 26 H 1.08990 * 109.47358 * 299.99539 * 1 2 3 27 27 H 1.08993 * 109.47164 * 53.95342 * 3 2 1 28 28 H 1.08996 * 109.46920 * 173.95376 * 3 2 1 29 29 H 0.96999 * 120.00406 * 179.97438 * 7 6 4 30 30 H 1.08003 * 119.25686 * 180.30110 * 14 13 12 31 31 H 1.07997 * 120.03718 * 179.72155 * 15 14 13 32 32 H 1.08996 * 115.54910 * 309.41757 * 19 18 17 33 33 H 1.08993 * 117.49505 * 0.02562 * 20 19 18 34 34 H 1.08999 * 117.49524 * 145.01883 * 20 19 18 35 35 H 1.08992 * 117.50259 * 214.97857 * 21 19 18 36 36 H 1.09002 * 117.49491 * 359.97438 * 21 19 18 37 37 H 1.07999 * 126.19996 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 -1.2985 5 1 1.0745 1.5112 -2.0489 6 6 2.0274 3.3492 -1.5289 7 7 1.7141 3.9391 -2.6618 8 14 3.0006 4.2759 -0.2314 9 1 4.4530 4.0626 -0.4556 10 1 2.6931 5.7258 -0.3237 11 1 2.6292 3.7760 1.1168 12 6 1.9655 -0.7222 1.0726 13 7 2.8020 -0.1594 1.9233 14 6 3.2871 -0.8385 2.9681 15 6 2.9523 -2.1248 3.1879 16 7 2.0911 -2.7634 2.3331 17 7 1.5619 -4.0561 2.2874 18 6 0.7697 -4.1538 1.2412 19 6 0.0041 -5.3868 0.8350 20 6 -1.1402 -5.2103 -0.1653 21 6 -1.4470 -5.5041 1.3054 22 6 0.7542 -2.9397 0.5724 23 6 1.5838 -2.0710 1.2620 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8899 27 1 1.5610 1.9274 0.8308 28 1 3.0796 1.3445 0.1082 29 1 1.9886 4.8552 -2.8238 30 1 3.9663 -0.3462 3.6484 31 1 3.3614 -2.6525 4.0368 32 1 0.5891 -6.3044 0.7738 33 1 -1.3389 -4.2025 -0.5298 34 1 -1.3082 -6.0120 -0.8843 35 1 -1.8169 -6.4990 1.5532 36 1 -1.8478 -4.6897 1.9089 37 1 0.1960 -2.7122 -0.3237 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601099089.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:42 Heat of formation + Delta-G solvation = 144.499713 kcal Electronic energy + Delta-G solvation = -20425.591358 eV Core-core repulsion = 17398.873365 eV Total energy + Delta-G solvation = -3026.717994 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.40746 -40.17827 -38.55536 -37.39900 -34.85165 -33.50310 -32.15325 -30.22508 -29.82108 -27.28534 -25.38424 -24.99414 -23.63055 -22.97541 -22.47362 -20.75092 -19.42745 -18.97434 -18.15408 -17.20969 -16.93633 -16.55412 -16.44573 -16.11688 -15.58816 -15.56966 -15.18703 -14.79865 -14.42199 -13.91340 -13.80689 -13.44065 -13.05647 -13.00646 -12.61280 -12.50827 -12.30801 -12.19695 -12.09595 -11.87887 -11.62939 -11.38898 -11.22598 -10.85645 -10.76443 -10.49372 -9.91429 -8.50082 -8.30996 -6.35796 -0.42289 -0.05393 1.02533 1.36187 1.37252 1.48029 1.49831 2.29236 2.33974 2.54321 2.85557 3.02888 3.17321 3.31981 3.44677 3.78322 3.95121 4.06663 4.16439 4.22600 4.31959 4.38122 4.41937 4.54553 4.69525 4.83198 4.84345 4.88759 4.97089 5.02837 5.05526 5.19383 5.30830 5.39798 5.41591 5.57246 5.68503 5.95597 6.37260 6.44814 6.67167 6.83928 7.28114 8.84276 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.024301 B = 0.005063 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.941269 B = 5528.838507 C = 6521.909694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.467 5.467 3 C 0.191 3.809 4 C -0.527 4.527 5 H 0.051 0.949 6 C 0.021 3.979 7 N -0.939 5.939 8 Si 0.938 3.062 9 H -0.269 1.269 10 H -0.278 1.278 11 H -0.253 1.253 12 C 0.359 3.641 13 N -0.539 5.539 14 C 0.054 3.946 15 C 0.011 3.989 16 N -0.258 5.258 17 N -0.317 5.317 18 C 0.121 3.879 19 C -0.102 4.102 20 C -0.153 4.153 21 C -0.154 4.154 22 C -0.241 4.241 23 C 0.029 3.971 24 H 0.082 0.918 25 H 0.096 0.904 26 H 0.034 0.966 27 H 0.005 0.995 28 H 0.034 0.966 29 H 0.269 0.731 30 H 0.216 0.784 31 H 0.210 0.790 32 H 0.133 0.867 33 H 0.097 0.903 34 H 0.126 0.874 35 H 0.123 0.877 36 H 0.086 0.914 37 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.243 -17.334 11.824 21.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.182 5.182 3 C 0.065 3.935 4 C -0.565 4.565 5 H 0.069 0.931 6 C -0.178 4.178 7 N -0.579 5.579 8 Si 0.762 3.238 9 H -0.194 1.194 10 H -0.204 1.204 11 H -0.176 1.176 12 C 0.104 3.896 13 N -0.259 5.259 14 C -0.087 4.087 15 C -0.116 4.116 16 N -0.028 5.028 17 N -0.144 5.144 18 C -0.034 4.034 19 C -0.122 4.122 20 C -0.190 4.190 21 C -0.192 4.192 22 C -0.273 4.273 23 C -0.095 4.095 24 H 0.101 0.899 25 H 0.115 0.885 26 H 0.053 0.947 27 H 0.023 0.977 28 H 0.052 0.948 29 H 0.078 0.922 30 H 0.232 0.768 31 H 0.226 0.774 32 H 0.151 0.849 33 H 0.116 0.884 34 H 0.144 0.856 35 H 0.142 0.858 36 H 0.104 0.896 37 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -2.280 -17.222 12.311 21.292 hybrid contribution 0.043 0.905 0.106 0.912 sum -2.237 -16.316 12.417 20.626 Atomic orbital electron populations 1.22541 0.82207 1.03590 1.02440 1.58518 1.10564 1.16770 1.32373 1.19830 0.95960 0.82240 0.95473 1.21195 1.35943 0.97862 1.01484 0.93103 1.25639 0.96562 0.98190 0.97382 1.70006 1.47977 1.14001 1.25877 0.85841 0.79534 0.77889 0.80545 1.19370 1.20358 1.17637 1.19956 0.92854 0.88560 0.88188 1.68419 1.14924 1.37985 1.04592 1.22673 1.00245 0.90246 0.95510 1.22827 0.96001 0.94665 0.98058 1.46492 1.29492 1.09076 1.17761 1.77692 1.19525 0.93212 1.23981 1.21817 0.94704 0.95624 0.91297 1.20337 0.90473 0.93543 1.07820 1.23191 0.98463 1.04533 0.92857 1.23092 0.94148 1.04259 0.97702 1.21437 1.08242 0.92126 1.05535 1.19926 1.02133 0.93676 0.93753 0.89886 0.88543 0.94690 0.97676 0.94830 0.92183 0.76785 0.77365 0.84888 0.88422 0.85617 0.85840 0.89572 0.81180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.37 9.09 127.69 1.16 2.54 16 2 N -0.47 -20.03 4.78 -729.58 -3.48 -23.51 16 3 C 0.19 9.39 3.06 85.56 0.26 9.65 16 4 C -0.53 -29.94 9.07 25.60 0.23 -29.71 16 5 H 0.05 3.14 7.35 -2.91 -0.02 3.12 16 6 C 0.02 1.21 5.47 84.65 0.46 1.68 16 7 N -0.94 -57.44 13.96 21.45 0.30 -57.14 16 8 Si 0.94 44.25 27.47 68.60 1.88 46.14 16 9 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.25 -11.43 6.54 99.48 0.65 -10.78 16 12 C 0.36 13.97 6.43 133.95 0.86 14.83 16 13 N -0.54 -20.11 8.74 -193.37 -1.69 -21.80 16 14 C 0.05 1.46 11.05 83.60 0.92 2.38 16 15 C 0.01 0.27 11.25 83.06 0.93 1.21 16 16 N -0.26 -8.16 3.97 -187.22 -0.74 -8.90 16 17 N -0.32 -9.73 12.68 -47.78 -0.61 -10.34 16 18 C 0.12 3.33 6.80 42.69 0.29 3.62 16 19 C -0.10 -1.96 6.33 -11.54 -0.07 -2.04 16 20 C -0.15 -2.26 10.01 30.62 0.31 -1.95 16 21 C -0.15 -2.32 10.24 30.62 0.31 -2.01 16 22 C -0.24 -7.30 8.80 22.43 0.20 -7.10 16 23 C 0.03 1.02 6.40 39.15 0.25 1.27 16 24 H 0.08 3.27 6.86 -2.38 -0.02 3.26 16 25 H 0.10 2.91 4.92 -2.39 -0.01 2.90 16 26 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.01 0.27 7.18 -2.39 -0.02 0.25 16 28 H 0.03 1.71 6.95 -2.39 -0.02 1.70 16 29 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 30 H 0.22 3.80 8.06 -2.91 -0.02 3.78 16 31 H 0.21 3.36 8.06 -2.91 -0.02 3.34 16 32 H 0.13 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.10 1.57 7.11 -2.39 -0.02 1.55 16 34 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.17 4.64 6.05 -2.91 -0.02 4.62 16 Total: -1.00 -71.86 307.89 2.82 -69.04 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: 1.03 Total: 12.15 kcal Atomic # 6 Polarization: -11.76 SS G_CDS: 6.12 Total: -5.63 kcal Atomic # 7 Polarization: -115.47 SS G_CDS: -6.22 Total: -121.69 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.88 Total: 46.14 kcal Total: -71.86 2.82 -69.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601099089.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 213.539 kcal (2) G-P(sol) polarization free energy of solvation -71.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds