Wall clock time and date at job start Mon Mar 30 2020 05:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46927 * 2 1 4 4 C 1.50706 * 109.46973 * 240.00285 * 2 1 3 5 5 H 1.07999 * 119.99537 * 240.00321 * 4 2 1 6 6 C 1.37870 * 120.00146 * 59.72325 * 4 2 1 7 7 N 1.31514 * 120.00152 * 0.27339 * 6 4 2 8 8 Si 1.86808 * 119.99885 * 180.27451 * 6 4 2 9 9 H 1.48506 * 109.46756 * 60.00326 * 8 6 4 10 10 H 1.48502 * 109.46828 * 179.97438 * 8 6 4 11 11 H 1.48489 * 109.46964 * 300.00175 * 8 6 4 12 12 N 1.46491 * 109.47145 * 120.00124 * 2 1 3 13 13 C 1.46505 * 120.00172 * 65.61087 * 12 2 1 14 14 C 1.38534 * 120.00266 * 245.61264 * 12 2 1 15 15 C 1.39704 * 120.49835 * 10.69524 * 14 12 2 16 16 C 1.39256 * 118.18590 * 179.74363 * 15 14 12 17 17 C 1.43204 * 120.52188 * 180.23604 * 16 15 14 18 18 N 5.98166 * 110.56749 * 34.27384 * 2 1 3 19 19 N 1.33452 * 118.96012 * 0.52628 * 16 15 14 20 20 C 1.31546 * 120.89885 * 359.73087 * 19 16 15 21 21 C 1.50700 * 118.99731 * 179.97438 * 20 19 16 22 22 C 1.52999 * 117.49556 * 8.76847 * 21 20 19 23 23 C 1.53004 * 117.49603 * 300.11154 * 21 20 19 24 24 N 1.31853 * 122.01302 * 359.97438 * 20 19 16 25 25 H 1.09000 * 109.46852 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46860 * 299.99960 * 1 2 3 27 27 H 1.09004 * 109.46740 * 60.00046 * 1 2 3 28 28 H 0.96998 * 120.00148 * 179.97438 * 7 6 4 29 29 H 1.08997 * 109.47348 * 89.99613 * 13 12 2 30 30 H 1.08997 * 109.47449 * 210.00227 * 13 12 2 31 31 H 1.09007 * 109.46941 * 329.99903 * 13 12 2 32 32 H 1.07997 * 120.90620 * 359.97212 * 15 14 12 33 33 H 1.08999 * 115.55321 * 154.43559 * 21 20 19 34 34 H 1.08998 * 117.50447 * 359.97438 * 22 21 20 35 35 H 1.09007 * 117.50119 * 145.02277 * 22 21 20 36 36 H 1.09006 * 117.49159 * 214.97655 * 23 21 20 37 37 H 1.08997 * 117.50242 * 359.97173 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1314 6 6 1.6946 -0.2426 -2.4827 7 7 0.9385 0.8266 -2.6034 8 14 2.3110 -1.1277 -4.0080 9 1 1.8153 -2.5276 -4.0021 10 1 1.8110 -0.4311 -5.2204 11 1 3.7959 -1.1284 -4.0137 12 7 2.0184 -0.6906 1.1961 13 6 1.7686 -2.1240 1.3677 14 6 2.7163 0.0117 2.1650 15 6 2.7705 1.4072 2.1283 16 6 3.4811 2.0644 3.1294 17 6 3.5650 3.4939 3.1431 18 7 3.6315 4.6279 3.1538 19 7 4.0877 1.3410 4.0727 20 6 4.0159 0.0275 4.0671 21 6 4.7177 -0.7471 5.1528 22 6 5.3059 0.0479 6.3202 23 6 6.2333 -0.5769 5.2749 24 7 3.3487 -0.6322 3.1408 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.7012 1.1559 -3.4844 29 1 2.5891 -2.6910 0.9278 30 1 1.6956 -2.3555 2.4302 31 1 0.8352 -2.3920 0.8725 32 1 2.2718 1.9613 1.3469 33 1 4.3023 -1.7306 5.3722 34 1 5.1857 1.1311 6.3029 35 1 5.2779 -0.4129 7.3077 36 1 6.8150 -1.4486 5.5751 37 1 6.7229 0.0948 4.5699 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601123766.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:08 Heat of formation + Delta-G solvation = 117.494494 kcal Electronic energy + Delta-G solvation = -20225.669389 eV Core-core repulsion = 17197.780362 eV Total energy + Delta-G solvation = -3027.889028 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.83483 -37.61016 -36.92478 -36.07205 -33.64200 -32.54630 -31.03985 -29.38826 -26.63924 -25.43534 -24.95453 -23.99067 -22.34320 -21.66438 -19.72192 -18.75361 -17.44412 -16.35548 -16.04037 -15.69597 -15.09695 -14.98674 -14.56577 -14.30400 -13.72673 -13.65535 -13.15527 -12.96170 -12.84767 -12.60087 -12.10228 -11.72336 -11.52369 -11.49080 -11.29807 -11.09482 -10.94563 -10.75795 -10.68698 -10.51657 -10.41435 -10.29691 -10.13950 -9.38703 -9.16345 -8.99802 -8.63763 -7.26182 -6.28067 -4.37969 0.81821 1.53120 2.59136 3.10701 3.17816 3.23597 3.24103 3.34783 3.64360 3.81129 4.17249 4.24384 4.36414 4.80195 4.95161 5.02821 5.08422 5.17935 5.26464 5.56876 5.65179 5.77677 5.82560 5.89472 6.10754 6.12222 6.24305 6.33493 6.43835 6.53331 6.64141 6.75810 7.06275 7.09773 7.41559 7.48439 7.65998 7.76175 7.95832 8.14429 8.52474 8.69102 9.30204 10.76333 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.019401 B = 0.005122 C = 0.004558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.890488 B = 5465.307169 C = 6141.760469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.262 3.738 3 H 0.054 0.946 4 C -0.532 4.532 5 H 0.064 0.936 6 C 0.069 3.931 7 N -0.887 5.887 8 Si 0.902 3.098 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.559 5.559 13 C 0.106 3.894 14 C 0.452 3.548 15 C -0.236 4.236 16 C 0.259 3.741 17 C 0.280 3.720 18 N -0.395 5.395 19 N -0.553 5.553 20 C 0.396 3.604 21 C -0.093 4.093 22 C -0.156 4.156 23 C -0.157 4.157 24 N -0.570 5.570 25 H 0.035 0.965 26 H 0.015 0.985 27 H 0.098 0.902 28 H 0.267 0.733 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.156 0.844 33 H 0.128 0.872 34 H 0.109 0.891 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.833 -4.047 11.564 12.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.162 3.838 3 H 0.072 0.928 4 C -0.571 4.571 5 H 0.082 0.918 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.730 3.270 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.265 5.265 13 C -0.038 4.038 14 C 0.205 3.795 15 C -0.269 4.269 16 C 0.118 3.882 17 C -0.038 4.038 18 N -0.071 5.071 19 N -0.276 5.276 20 C 0.126 3.874 21 C -0.114 4.114 22 C -0.193 4.193 23 C -0.195 4.195 24 N -0.296 5.296 25 H 0.054 0.946 26 H 0.034 0.966 27 H 0.116 0.884 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.174 0.826 33 H 0.146 0.854 34 H 0.128 0.872 35 H 0.115 0.885 36 H 0.118 0.882 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.115 -2.791 11.889 12.887 hybrid contribution -0.216 -0.485 -1.747 1.826 sum 3.899 -3.276 10.142 11.349 Atomic orbital electron populations 1.22159 0.97532 1.00160 1.01190 1.19202 0.91534 0.93462 0.79581 0.92837 1.21222 1.32432 1.13685 0.89731 0.91804 1.24874 0.94611 0.94925 0.99075 1.69833 1.35760 1.22470 1.24379 0.86481 0.79284 0.79704 0.81577 1.20031 1.21051 1.20112 1.47400 1.51723 1.08981 1.18406 1.21442 1.01148 0.80468 1.00704 1.18490 0.86517 0.87678 0.86844 1.22254 1.07057 0.94811 1.02780 1.16069 0.94358 0.85943 0.91848 1.24893 0.93847 0.91575 0.93472 1.81195 1.07110 1.11510 1.07324 1.67877 1.25147 1.08071 1.26486 1.21483 0.89621 0.85408 0.90885 1.20556 0.95465 0.99651 0.95681 1.23015 1.02227 1.01064 0.93017 1.22972 0.90741 1.03213 1.02615 1.67670 1.14816 1.40946 1.06152 0.94579 0.96598 0.88394 0.92299 0.93225 0.92051 0.91071 0.82622 0.85413 0.87216 0.88482 0.88197 0.88523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 9.04 37.16 0.34 -2.89 16 2 C 0.26 5.81 2.50 -69.08 -0.17 5.64 16 3 H 0.05 1.26 5.57 -51.93 -0.29 0.97 16 4 C -0.53 -13.06 8.31 -34.44 -0.29 -13.35 16 5 H 0.06 1.58 7.33 -52.49 -0.38 1.20 16 6 C 0.07 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -22.87 11.31 55.43 0.63 -22.24 16 8 Si 0.90 19.77 29.54 -169.99 -5.02 14.75 16 9 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 10 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 12 N -0.56 -10.94 2.86 -175.23 -0.50 -11.44 16 13 C 0.11 1.81 9.41 59.85 0.56 2.37 16 14 C 0.45 8.46 7.34 -154.83 -1.14 7.32 16 15 C -0.24 -4.21 9.02 -38.66 -0.35 -4.56 16 16 C 0.26 4.33 6.61 -84.86 -0.56 3.77 16 17 C 0.28 4.62 15.59 -22.47 -0.35 4.27 16 18 N -0.39 -6.83 18.54 41.84 0.78 -6.05 16 19 N -0.55 -9.01 9.28 -8.80 -0.08 -9.09 16 20 C 0.40 6.28 7.31 -157.36 -1.15 5.13 16 21 C -0.09 -1.14 6.23 -91.77 -0.57 -1.71 16 22 C -0.16 -1.58 10.01 -26.69 -0.27 -1.85 16 23 C -0.16 -1.63 10.24 -26.69 -0.27 -1.90 16 24 N -0.57 -9.97 9.29 -10.00 -0.09 -10.07 16 25 H 0.04 0.73 6.90 -51.93 -0.36 0.37 16 26 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.10 2.31 6.06 -51.93 -0.31 1.99 16 28 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 29 H 0.05 0.85 8.00 -51.93 -0.42 0.44 16 30 H 0.06 0.95 7.59 -51.93 -0.39 0.56 16 31 H 0.07 1.19 6.74 -51.92 -0.35 0.84 16 32 H 0.16 2.79 6.10 -52.49 -0.32 2.47 16 33 H 0.13 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.11 1.26 7.54 -51.93 -0.39 0.87 16 35 H 0.10 0.77 8.14 -51.92 -0.42 0.34 16 36 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 319.88 15.07 4.82 4.82 Total: -1.00 -25.99 319.88 -8.25 -34.24 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -4.47 Total: 1.21 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: -4.31 Total: 3.87 kcal Atomic # 7 Polarization: -59.62 SS G_CDS: 0.73 Total: -58.89 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -25.99 -8.25 -34.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601123766.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.739 kcal (2) G-P(sol) polarization free energy of solvation -25.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds