Wall clock time and date at job start Mon Mar 30 2020 05:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46927 * 2 1 4 4 C 1.50706 * 109.46973 * 240.00285 * 2 1 3 5 5 H 1.07999 * 119.99537 * 240.00321 * 4 2 1 6 6 C 1.37870 * 120.00146 * 59.72325 * 4 2 1 7 7 N 1.31514 * 120.00152 * 0.27339 * 6 4 2 8 8 Si 1.86808 * 119.99885 * 180.27451 * 6 4 2 9 9 H 1.48506 * 109.46756 * 60.00326 * 8 6 4 10 10 H 1.48502 * 109.46828 * 179.97438 * 8 6 4 11 11 H 1.48489 * 109.46964 * 300.00175 * 8 6 4 12 12 N 1.46491 * 109.47145 * 120.00124 * 2 1 3 13 13 C 1.46505 * 120.00172 * 65.61087 * 12 2 1 14 14 C 1.38534 * 120.00266 * 245.61264 * 12 2 1 15 15 C 1.39704 * 120.49835 * 10.69524 * 14 12 2 16 16 C 1.39256 * 118.18590 * 179.74363 * 15 14 12 17 17 C 1.43204 * 120.52188 * 180.23604 * 16 15 14 18 18 N 5.98166 * 110.56749 * 34.27384 * 2 1 3 19 19 N 1.33452 * 118.96012 * 0.52628 * 16 15 14 20 20 C 1.31546 * 120.89885 * 359.73087 * 19 16 15 21 21 C 1.50700 * 118.99731 * 179.97438 * 20 19 16 22 22 C 1.52999 * 117.49556 * 8.76847 * 21 20 19 23 23 C 1.53004 * 117.49603 * 300.11154 * 21 20 19 24 24 N 1.31853 * 122.01302 * 359.97438 * 20 19 16 25 25 H 1.09000 * 109.46852 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46860 * 299.99960 * 1 2 3 27 27 H 1.09004 * 109.46740 * 60.00046 * 1 2 3 28 28 H 0.96998 * 120.00148 * 179.97438 * 7 6 4 29 29 H 1.08997 * 109.47348 * 89.99613 * 13 12 2 30 30 H 1.08997 * 109.47449 * 210.00227 * 13 12 2 31 31 H 1.09007 * 109.46941 * 329.99903 * 13 12 2 32 32 H 1.07997 * 120.90620 * 359.97212 * 15 14 12 33 33 H 1.08999 * 115.55321 * 154.43559 * 21 20 19 34 34 H 1.08998 * 117.50447 * 359.97438 * 22 21 20 35 35 H 1.09007 * 117.50119 * 145.02277 * 22 21 20 36 36 H 1.09006 * 117.49159 * 214.97655 * 23 21 20 37 37 H 1.08997 * 117.50242 * 359.97173 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1314 6 6 1.6946 -0.2426 -2.4827 7 7 0.9385 0.8266 -2.6034 8 14 2.3110 -1.1277 -4.0080 9 1 1.8153 -2.5276 -4.0021 10 1 1.8110 -0.4311 -5.2204 11 1 3.7959 -1.1284 -4.0137 12 7 2.0184 -0.6906 1.1961 13 6 1.7686 -2.1240 1.3677 14 6 2.7163 0.0117 2.1650 15 6 2.7705 1.4072 2.1283 16 6 3.4811 2.0644 3.1294 17 6 3.5650 3.4939 3.1431 18 7 3.6315 4.6279 3.1538 19 7 4.0877 1.3410 4.0727 20 6 4.0159 0.0275 4.0671 21 6 4.7177 -0.7471 5.1528 22 6 5.3059 0.0479 6.3202 23 6 6.2333 -0.5769 5.2749 24 7 3.3487 -0.6322 3.1408 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.7012 1.1559 -3.4844 29 1 2.5891 -2.6910 0.9278 30 1 1.6956 -2.3555 2.4302 31 1 0.8352 -2.3920 0.8725 32 1 2.2718 1.9613 1.3469 33 1 4.3023 -1.7306 5.3722 34 1 5.1857 1.1311 6.3029 35 1 5.2779 -0.4129 7.3077 36 1 6.8150 -1.4486 5.5751 37 1 6.7229 0.0948 4.5699 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601123766.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:08 Heat of formation + Delta-G solvation = 106.158037 kcal Electronic energy + Delta-G solvation = -20226.160975 eV Core-core repulsion = 17197.780362 eV Total energy + Delta-G solvation = -3028.380613 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.17843 -38.95393 -38.19531 -37.31878 -35.28137 -34.07911 -32.44199 -31.03893 -28.04736 -27.30024 -26.18247 -25.40895 -23.20240 -23.04777 -21.04543 -20.14600 -18.92346 -18.08282 -17.55119 -16.72784 -16.69023 -16.38711 -16.06062 -15.30399 -15.20655 -15.17579 -14.55482 -14.42294 -14.32518 -14.04439 -13.48365 -13.13131 -13.03603 -12.91917 -12.75124 -12.61777 -12.35784 -12.28795 -12.14004 -11.91418 -11.73636 -11.70202 -11.25602 -11.11228 -10.54827 -10.44238 -10.35545 -8.77619 -8.16171 -6.32754 -0.55574 0.17272 1.22806 1.43752 1.45268 1.51799 1.75012 1.92162 2.26191 2.42964 2.70045 3.00681 3.11617 3.22705 3.55445 3.81899 4.03137 4.15992 4.19369 4.27079 4.41670 4.57162 4.72309 4.78795 4.90192 4.92407 5.00667 5.02225 5.05917 5.17604 5.28938 5.38814 5.44126 5.60057 5.64449 5.90997 6.04252 6.08406 6.33460 6.55248 6.76323 7.19107 7.38934 8.85263 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.019401 B = 0.005122 C = 0.004558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.890488 B = 5465.307169 C = 6141.760469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.268 3.732 3 H 0.035 0.965 4 C -0.541 4.541 5 H 0.058 0.942 6 C 0.027 3.973 7 N -0.910 5.910 8 Si 0.956 3.044 9 H -0.268 1.268 10 H -0.284 1.284 11 H -0.278 1.278 12 N -0.569 5.569 13 C 0.109 3.891 14 C 0.442 3.558 15 C -0.249 4.249 16 C 0.267 3.733 17 C 0.291 3.709 18 N -0.405 5.405 19 N -0.551 5.551 20 C 0.392 3.608 21 C -0.114 4.114 22 C -0.141 4.141 23 C -0.148 4.148 24 N -0.573 5.573 25 H 0.040 0.960 26 H 0.028 0.972 27 H 0.074 0.926 28 H 0.266 0.734 29 H 0.045 0.955 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.149 0.851 33 H 0.144 0.856 34 H 0.094 0.906 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.733 -5.184 12.970 14.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.166 3.834 3 H 0.053 0.947 4 C -0.580 4.580 5 H 0.076 0.924 6 C -0.174 4.174 7 N -0.548 5.548 8 Si 0.782 3.218 9 H -0.193 1.193 10 H -0.210 1.210 11 H -0.204 1.204 12 N -0.277 5.277 13 C -0.033 4.033 14 C 0.195 3.805 15 C -0.282 4.282 16 C 0.125 3.875 17 C -0.027 4.027 18 N -0.082 5.082 19 N -0.274 5.274 20 C 0.124 3.876 21 C -0.134 4.134 22 C -0.179 4.179 23 C -0.186 4.186 24 N -0.299 5.299 25 H 0.060 0.940 26 H 0.048 0.952 27 H 0.093 0.907 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.167 0.833 33 H 0.161 0.839 34 H 0.113 0.887 35 H 0.145 0.855 36 H 0.146 0.854 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.030 -3.941 13.327 14.779 hybrid contribution -0.426 -0.105 -2.077 2.123 sum 4.604 -4.046 11.250 12.811 Atomic orbital electron populations 1.21968 0.96955 1.00267 1.00619 1.18906 0.91881 0.92508 0.80056 0.94701 1.21467 1.32148 1.13497 0.90883 0.92409 1.25520 0.94880 0.95547 1.01409 1.69942 1.36669 1.23485 1.24695 0.85641 0.78446 0.78997 0.78755 1.19330 1.20977 1.20371 1.47227 1.52619 1.09741 1.18106 1.21487 1.00964 0.79117 1.01732 1.18613 0.86735 0.87939 0.87179 1.22192 1.07994 0.94755 1.03223 1.16056 0.93886 0.85980 0.91592 1.24774 0.93463 0.91371 0.93057 1.81203 1.07480 1.11761 1.07741 1.67994 1.24847 1.08455 1.26073 1.22302 0.88814 0.85449 0.91065 1.20784 0.96569 1.00327 0.95705 1.23089 1.00735 1.00202 0.93826 1.23069 0.89554 1.03879 1.02075 1.67744 1.14926 1.41034 1.06158 0.94046 0.95248 0.90745 0.92445 0.93643 0.90405 0.90973 0.83338 0.83869 0.88707 0.85526 0.85449 0.90019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.95 9.04 71.98 0.65 -5.30 16 2 C 0.27 12.00 2.50 44.25 0.11 12.11 16 3 H 0.04 1.70 5.57 -2.39 -0.01 1.69 16 4 C -0.54 -26.73 8.31 25.60 0.21 -26.51 16 5 H 0.06 2.86 7.33 -2.91 -0.02 2.84 16 6 C 0.03 1.37 5.30 84.65 0.45 1.82 16 7 N -0.91 -47.48 11.31 21.44 0.24 -47.24 16 8 Si 0.96 40.47 29.54 68.60 2.03 42.50 16 9 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 10 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 11 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 12 N -0.57 -22.21 2.86 -708.30 -2.02 -24.23 16 13 C 0.11 3.66 9.41 127.77 1.20 4.86 16 14 C 0.44 16.43 7.34 133.21 0.98 17.40 16 15 C -0.25 -8.93 9.02 22.87 0.21 -8.73 16 16 C 0.27 8.84 6.61 40.39 0.27 9.10 16 17 C 0.29 9.49 15.59 88.33 1.38 10.87 16 18 N -0.40 -13.81 18.54 19.00 0.35 -13.46 16 19 N -0.55 -17.39 9.28 -181.74 -1.69 -19.07 16 20 C 0.39 11.88 7.31 138.81 1.01 12.89 16 21 C -0.11 -2.48 6.23 -11.54 -0.07 -2.55 16 22 C -0.14 -2.43 10.01 30.62 0.31 -2.13 16 23 C -0.15 -2.63 10.24 30.62 0.31 -2.31 16 24 N -0.57 -19.44 9.29 -185.54 -1.72 -21.16 16 25 H 0.04 1.67 6.90 -2.39 -0.02 1.66 16 26 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.07 3.56 6.06 -2.39 -0.01 3.54 16 28 H 0.27 13.39 8.31 -92.71 -0.77 12.62 16 29 H 0.04 1.53 8.00 -2.39 -0.02 1.51 16 30 H 0.08 2.31 7.59 -2.39 -0.02 2.29 16 31 H 0.07 2.36 6.74 -2.38 -0.02 2.34 16 32 H 0.15 5.50 6.10 -2.91 -0.02 5.49 16 33 H 0.14 2.68 8.14 -2.39 -0.02 2.66 16 34 H 0.09 1.97 7.54 -2.39 -0.02 1.95 16 35 H 0.13 1.47 8.14 -2.38 -0.02 1.45 16 36 H 0.13 1.59 8.14 -2.38 -0.02 1.57 16 37 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -54.63 319.88 5.30 -49.33 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: 1.10 Total: 11.82 kcal Atomic # 6 Polarization: 14.51 SS G_CDS: 7.02 Total: 21.53 kcal Atomic # 7 Polarization: -120.33 SS G_CDS: -4.84 Total: -125.17 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 2.03 Total: 42.50 kcal Total: -54.63 5.30 -49.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601123766.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.488 kcal (2) G-P(sol) polarization free energy of solvation -54.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds