Wall clock time and date at job start Mon Mar 30 2020 05:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 110.55153 * 2 1 4 4 C 1.55002 * 110.75091 * 237.02828 * 2 1 3 5 5 C 1.54815 * 102.09032 * 204.41120 * 4 2 1 6 6 C 1.52991 * 110.48620 * 139.55750 * 5 4 2 7 7 C 1.53005 * 109.47465 * 65.23385 * 6 5 4 8 8 O 1.42893 * 109.47193 * 180.02562 * 7 6 5 9 9 C 1.42901 * 113.99869 * 179.97438 * 8 7 6 10 10 C 1.50706 * 109.47016 * 179.97438 * 9 8 7 11 11 H 1.07993 * 119.99788 * 0.02562 * 10 9 8 12 12 C 1.37883 * 119.99575 * 179.97438 * 10 9 8 13 13 N 1.31507 * 119.99949 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 119.99398 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47704 * 359.97438 * 14 12 10 16 16 H 1.48507 * 109.47304 * 120.00296 * 14 12 10 17 17 H 1.48500 * 109.47213 * 239.99642 * 14 12 10 18 18 C 1.50702 * 110.59775 * 262.15095 * 5 4 2 19 19 O 1.20827 * 120.00443 * 114.83676 * 18 5 4 20 20 O 1.34232 * 119.99793 * 294.83312 * 18 5 4 21 21 C 1.54099 * 104.18723 * 20.88011 * 5 4 2 22 22 H 1.09005 * 109.87694 * 242.60562 * 21 5 4 23 23 C 1.52995 * 110.00608 * 121.52833 * 21 5 4 24 24 O 1.43744 * 107.29531 * 2.03003 * 21 5 4 25 25 H 1.09002 * 109.47158 * 300.69937 * 1 2 3 26 26 H 1.09000 * 109.47596 * 60.70332 * 1 2 3 27 27 H 1.09004 * 109.47140 * 180.70104 * 1 2 3 28 28 H 1.08994 * 110.90293 * 322.60474 * 4 2 1 29 29 H 1.08995 * 110.90665 * 86.21355 * 4 2 1 30 30 H 1.09001 * 109.47048 * 185.22962 * 6 5 4 31 31 H 1.09000 * 109.47235 * 305.22732 * 6 5 4 32 32 H 1.09001 * 109.46642 * 299.99826 * 7 6 5 33 33 H 1.09000 * 109.46985 * 59.99764 * 7 6 5 34 34 H 1.08995 * 109.47045 * 299.99588 * 9 8 7 35 35 H 1.09002 * 109.47498 * 59.99932 * 9 8 7 36 36 H 0.97006 * 119.99638 * 179.97438 * 13 12 10 37 37 H 0.96693 * 116.99900 * 180.02562 * 20 18 5 38 38 H 1.09005 * 109.46729 * 300.64279 * 23 21 5 39 39 H 1.09004 * 109.47338 * 60.62960 * 23 21 5 40 40 H 1.08998 * 109.47728 * 180.63963 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0206 0.0000 4 6 2.0791 -0.7888 -1.2160 5 6 3.4831 -1.2129 -0.7202 6 6 3.7927 -2.6476 -1.1521 7 6 3.8847 -2.7123 -2.6780 8 8 4.1733 -4.0524 -3.0814 9 6 4.2801 -4.2233 -4.4961 10 6 4.5851 -5.6662 -4.8062 11 1 4.6867 -6.3812 -4.0033 12 6 4.7334 -6.0735 -6.1151 13 7 4.6091 -5.2029 -7.0928 14 14 5.1107 -7.8622 -6.4994 15 1 5.2008 -8.6324 -5.2330 16 1 4.0285 -8.4256 -7.3461 17 1 6.4034 -7.9506 -7.2249 18 6 4.5363 -0.2682 -1.2390 19 8 5.1610 0.4222 -0.4689 20 8 4.7806 -0.1937 -2.5568 21 6 3.3852 -1.1210 0.8149 22 1 4.0845 -0.3721 1.1867 23 6 3.6981 -2.4811 1.4418 24 8 2.0384 -0.7336 1.1348 25 1 -0.3633 0.5247 0.8837 26 1 -0.3634 0.5029 -0.8962 27 1 -0.3634 -1.0276 0.0126 28 1 1.4605 -1.6615 -1.4250 29 1 2.1541 -0.1474 -2.0940 30 1 4.7418 -2.9611 -0.7173 31 1 2.9988 -3.3101 -0.8075 32 1 2.9356 -2.3988 -3.1128 33 1 4.6787 -2.0497 -3.0225 34 1 3.3392 -3.9409 -4.9683 35 1 5.0824 -3.5924 -4.8788 36 1 4.7138 -5.4894 -8.0136 37 1 5.4655 0.4264 -2.8420 38 1 2.9905 -3.2231 1.0717 39 1 4.7114 -2.7803 1.1737 40 1 3.6153 -2.4092 2.5262 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686450539.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:31 Heat of formation + Delta-G solvation = -193.899783 kcal Electronic energy + Delta-G solvation = -22013.498718 eV Core-core repulsion = 18600.212199 eV Total energy + Delta-G solvation = -3413.286519 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.39495 -39.18535 -36.91808 -36.22552 -34.51418 -32.90557 -32.65881 -29.65087 -28.76506 -26.86437 -25.23112 -22.95874 -22.69940 -22.20681 -21.53831 -19.38331 -18.07592 -17.41076 -16.38876 -16.34984 -15.88009 -15.71310 -15.06367 -14.85141 -14.68932 -14.37962 -14.02079 -13.66731 -13.14322 -12.93386 -12.68347 -12.50901 -12.31137 -12.17251 -11.93179 -11.74669 -11.64604 -11.42876 -11.13896 -10.97208 -10.93200 -10.70528 -10.59398 -10.44516 -10.38312 -10.00879 -9.74408 -9.10185 -8.80965 -8.17248 -6.12746 -4.14413 2.01668 2.81214 3.27850 3.34482 3.40834 3.53888 4.04171 4.29365 4.39486 4.46630 4.73059 4.89782 5.01689 5.09836 5.14956 5.23924 5.28353 5.31639 5.38798 5.44029 5.50830 5.61961 5.77916 5.82716 5.88546 5.92363 5.94830 5.97392 6.16580 6.32261 6.37437 6.47988 6.75296 7.10206 7.41913 7.75502 7.78158 8.13784 8.56660 8.99570 9.50684 10.98782 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.025771 B = 0.004010 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.248726 B = 6981.507628 C = 7124.564391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.069 3.931 3 H 0.069 0.931 4 C -0.138 4.138 5 C -0.081 4.081 6 C -0.103 4.103 7 C 0.052 3.948 8 O -0.399 6.399 9 C 0.197 3.803 10 C -0.515 4.515 11 H 0.067 0.933 12 C 0.056 3.944 13 N -0.898 5.898 14 Si 0.907 3.093 15 H -0.270 1.270 16 H -0.282 1.282 17 H -0.282 1.282 18 C 0.495 3.505 19 O -0.516 6.516 20 O -0.497 6.497 21 C 0.086 3.914 22 H 0.092 0.908 23 C -0.154 4.154 24 O -0.364 6.364 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.100 0.900 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.037 0.963 33 H 0.061 0.939 34 H 0.005 0.995 35 H 0.005 0.995 36 H 0.263 0.737 37 H 0.407 0.593 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.987 11.952 12.964 18.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.012 3.988 3 H 0.087 0.913 4 C -0.175 4.175 5 C -0.083 4.083 6 C -0.140 4.140 7 C -0.025 4.025 8 O -0.319 6.319 9 C 0.123 3.877 10 C -0.553 4.553 11 H 0.085 0.915 12 C -0.145 4.145 13 N -0.537 5.537 14 Si 0.734 3.266 15 H -0.195 1.195 16 H -0.208 1.208 17 H -0.208 1.208 18 C 0.338 3.662 19 O -0.404 6.404 20 O -0.309 6.309 21 C 0.029 3.971 22 H 0.110 0.890 23 C -0.211 4.211 24 O -0.284 6.284 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.119 0.881 29 H 0.109 0.891 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.056 0.944 33 H 0.079 0.921 34 H 0.023 0.977 35 H 0.023 0.977 36 H 0.073 0.927 37 H 0.267 0.733 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.199 11.674 13.425 18.535 hybrid contribution 0.810 -0.099 -1.060 1.338 sum -4.389 11.574 12.364 17.496 Atomic orbital electron populations 1.21765 0.92588 1.03343 1.02531 1.23163 0.95646 0.95203 0.84815 0.91333 1.23379 0.92976 1.02201 0.98951 1.21867 0.93750 0.95534 0.97149 1.21662 1.03953 0.91327 0.97080 1.22559 0.99958 0.87312 0.92662 1.87804 1.92088 1.24710 1.27294 1.20177 0.95343 0.97298 0.74863 1.21116 1.48249 0.93606 0.92379 0.91503 1.24946 0.95310 0.98445 0.95779 1.69973 1.50020 1.34205 0.99551 0.86294 0.77908 0.83938 0.78441 1.19463 1.20821 1.20844 1.23073 0.82133 0.80720 0.80310 1.90682 1.49040 1.42941 1.57758 1.84738 1.58443 1.62110 1.25566 1.22790 0.85524 0.98737 0.90075 0.89021 1.22060 1.02613 0.95199 1.01210 1.88908 1.27404 1.73514 1.38593 0.91746 0.90930 0.91369 0.88137 0.89120 0.90196 0.89017 0.94446 0.92087 0.97735 0.97710 0.92714 0.73322 0.90953 0.90633 0.91648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.67 37.16 0.36 -0.87 16 2 C 0.07 0.73 3.97 -25.68 -0.10 0.63 16 3 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 4 C -0.14 -1.52 4.78 -24.72 -0.12 -1.64 16 5 C -0.08 -1.02 0.67 -154.13 -0.10 -1.12 16 6 C -0.10 -1.48 3.35 -26.73 -0.09 -1.57 16 7 C 0.05 0.95 5.18 37.16 0.19 1.14 16 8 O -0.40 -9.53 10.33 -35.23 -0.36 -9.89 16 9 C 0.20 5.39 5.69 36.01 0.20 5.60 16 10 C -0.52 -15.12 9.43 -34.44 -0.32 -15.45 16 11 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 13 N -0.90 -26.70 13.29 55.43 0.74 -25.96 16 14 Si 0.91 21.68 29.54 -169.99 -5.02 16.66 16 15 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 18 C 0.50 6.49 6.83 36.01 0.25 6.73 16 19 O -0.52 -7.69 16.01 -18.75 -0.30 -7.99 16 20 O -0.50 -5.82 10.16 -39.26 -0.40 -6.22 16 21 C 0.09 1.06 3.66 -26.16 -0.10 0.96 16 22 H 0.09 1.21 6.44 -51.93 -0.33 0.87 16 23 C -0.15 -1.69 8.41 37.16 0.31 -1.37 16 24 O -0.36 -4.59 10.89 -35.23 -0.38 -4.97 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.10 1.11 7.72 -51.93 -0.40 0.71 16 29 H 0.09 0.93 7.80 -51.93 -0.41 0.53 16 30 H 0.08 1.15 6.75 -51.93 -0.35 0.79 16 31 H 0.09 1.27 6.80 -51.93 -0.35 0.92 16 32 H 0.04 0.66 7.41 -51.93 -0.38 0.27 16 33 H 0.06 1.10 5.29 -51.93 -0.27 0.82 16 34 H 0.00 0.14 8.14 -51.93 -0.42 -0.29 16 35 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 36 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.41 3.01 9.10 45.56 0.41 3.42 16 38 H 0.07 0.80 6.69 -51.93 -0.35 0.45 16 39 H 0.07 0.80 6.88 -51.93 -0.36 0.44 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 322.63 15.07 4.86 4.86 Total: -1.00 -33.52 322.63 -5.78 -39.31 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -5.30 Total: -0.36 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: 0.38 Total: -5.44 kcal Atomic # 7 Polarization: -26.70 SS G_CDS: 0.74 Total: -25.96 kcal Atomic # 8 Polarization: -27.62 SS G_CDS: -1.45 Total: -29.06 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.52 -5.78 -39.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686450539.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.594 kcal (2) G-P(sol) polarization free energy of solvation -33.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds