Wall clock time and date at job start Mon Mar 30 2020 05:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 110.55153 * 2 1 4 4 C 1.55002 * 110.75091 * 237.02828 * 2 1 3 5 5 C 1.54815 * 102.09032 * 204.41120 * 4 2 1 6 6 C 1.52991 * 110.48620 * 139.55750 * 5 4 2 7 7 C 1.53005 * 109.47465 * 65.23385 * 6 5 4 8 8 O 1.42893 * 109.47193 * 180.02562 * 7 6 5 9 9 C 1.42901 * 113.99869 * 179.97438 * 8 7 6 10 10 C 1.50706 * 109.47016 * 179.97438 * 9 8 7 11 11 H 1.07993 * 119.99788 * 0.02562 * 10 9 8 12 12 C 1.37883 * 119.99575 * 179.97438 * 10 9 8 13 13 N 1.31507 * 119.99949 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 119.99398 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47704 * 359.97438 * 14 12 10 16 16 H 1.48507 * 109.47304 * 120.00296 * 14 12 10 17 17 H 1.48500 * 109.47213 * 239.99642 * 14 12 10 18 18 C 1.50702 * 110.59775 * 262.15095 * 5 4 2 19 19 O 1.20827 * 120.00443 * 114.83676 * 18 5 4 20 20 O 1.34232 * 119.99793 * 294.83312 * 18 5 4 21 21 C 1.54099 * 104.18723 * 20.88011 * 5 4 2 22 22 H 1.09005 * 109.87694 * 242.60562 * 21 5 4 23 23 C 1.52995 * 110.00608 * 121.52833 * 21 5 4 24 24 O 1.43744 * 107.29531 * 2.03003 * 21 5 4 25 25 H 1.09002 * 109.47158 * 300.69937 * 1 2 3 26 26 H 1.09000 * 109.47596 * 60.70332 * 1 2 3 27 27 H 1.09004 * 109.47140 * 180.70104 * 1 2 3 28 28 H 1.08994 * 110.90293 * 322.60474 * 4 2 1 29 29 H 1.08995 * 110.90665 * 86.21355 * 4 2 1 30 30 H 1.09001 * 109.47048 * 185.22962 * 6 5 4 31 31 H 1.09000 * 109.47235 * 305.22732 * 6 5 4 32 32 H 1.09001 * 109.46642 * 299.99826 * 7 6 5 33 33 H 1.09000 * 109.46985 * 59.99764 * 7 6 5 34 34 H 1.08995 * 109.47045 * 299.99588 * 9 8 7 35 35 H 1.09002 * 109.47498 * 59.99932 * 9 8 7 36 36 H 0.97006 * 119.99638 * 179.97438 * 13 12 10 37 37 H 0.96693 * 116.99900 * 180.02562 * 20 18 5 38 38 H 1.09005 * 109.46729 * 300.64279 * 23 21 5 39 39 H 1.09004 * 109.47338 * 60.62960 * 23 21 5 40 40 H 1.08998 * 109.47728 * 180.63963 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0206 0.0000 4 6 2.0791 -0.7888 -1.2160 5 6 3.4831 -1.2129 -0.7202 6 6 3.7927 -2.6476 -1.1521 7 6 3.8847 -2.7123 -2.6780 8 8 4.1733 -4.0524 -3.0814 9 6 4.2801 -4.2233 -4.4961 10 6 4.5851 -5.6662 -4.8062 11 1 4.6867 -6.3812 -4.0033 12 6 4.7334 -6.0735 -6.1151 13 7 4.6091 -5.2029 -7.0928 14 14 5.1107 -7.8622 -6.4994 15 1 5.2008 -8.6324 -5.2330 16 1 4.0285 -8.4256 -7.3461 17 1 6.4034 -7.9506 -7.2249 18 6 4.5363 -0.2682 -1.2390 19 8 5.1610 0.4222 -0.4689 20 8 4.7806 -0.1937 -2.5568 21 6 3.3852 -1.1210 0.8149 22 1 4.0845 -0.3721 1.1867 23 6 3.6981 -2.4811 1.4418 24 8 2.0384 -0.7336 1.1348 25 1 -0.3633 0.5247 0.8837 26 1 -0.3634 0.5029 -0.8962 27 1 -0.3634 -1.0276 0.0126 28 1 1.4605 -1.6615 -1.4250 29 1 2.1541 -0.1474 -2.0940 30 1 4.7418 -2.9611 -0.7173 31 1 2.9988 -3.3101 -0.8075 32 1 2.9356 -2.3988 -3.1128 33 1 4.6787 -2.0497 -3.0225 34 1 3.3392 -3.9409 -4.9683 35 1 5.0824 -3.5924 -4.8788 36 1 4.7138 -5.4894 -8.0136 37 1 5.4655 0.4264 -2.8420 38 1 2.9905 -3.2231 1.0717 39 1 4.7114 -2.7803 1.1737 40 1 3.6153 -2.4092 2.5262 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686450539.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:31 Heat of formation + Delta-G solvation = -217.224186 kcal Electronic energy + Delta-G solvation = -22014.510140 eV Core-core repulsion = 18600.212199 eV Total energy + Delta-G solvation = -3414.297941 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.41081 -40.16336 -38.64070 -37.29366 -35.75331 -34.78240 -33.73568 -30.86733 -29.91615 -28.73011 -26.21546 -24.55096 -23.98884 -23.75163 -22.40831 -20.41119 -19.13460 -18.72931 -18.25958 -17.49928 -17.27221 -16.82431 -16.56075 -16.18064 -16.09874 -15.72328 -15.28921 -14.88984 -14.59593 -14.04858 -13.87411 -13.63530 -13.38136 -13.23808 -13.11059 -12.91318 -12.87190 -12.78430 -12.58508 -12.45133 -12.24980 -12.09417 -11.88462 -11.72864 -11.66319 -11.50058 -11.24026 -10.81990 -10.68348 -10.17078 -8.31551 -6.43734 0.96832 1.41498 1.42367 1.57164 1.86556 2.35090 2.65189 2.90589 3.02544 3.26270 3.46848 3.73024 3.93145 4.04536 4.07716 4.18363 4.30074 4.34341 4.36347 4.52215 4.59406 4.62454 4.68917 4.81849 4.84194 4.89755 4.96379 5.05666 5.09851 5.11557 5.21706 5.26123 5.30795 5.44648 5.56590 5.86010 5.97157 6.54576 6.82869 6.84127 7.28471 8.80852 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.025771 B = 0.004010 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.248726 B = 6981.507628 C = 7124.564391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.067 3.933 3 H 0.071 0.929 4 C -0.137 4.137 5 C -0.079 4.079 6 C -0.092 4.092 7 C 0.046 3.954 8 O -0.413 6.413 9 C 0.212 3.788 10 C -0.550 4.550 11 H 0.062 0.938 12 C 0.008 3.992 13 N -0.929 5.929 14 Si 0.982 3.018 15 H -0.264 1.264 16 H -0.271 1.271 17 H -0.272 1.272 18 C 0.499 3.501 19 O -0.536 6.536 20 O -0.501 6.501 21 C 0.089 3.911 22 H 0.082 0.918 23 C -0.154 4.154 24 O -0.377 6.377 25 H 0.069 0.931 26 H 0.089 0.911 27 H 0.064 0.936 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.044 0.956 33 H 0.064 0.936 34 H -0.013 1.013 35 H -0.014 1.014 36 H 0.271 0.729 37 H 0.426 0.574 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.330 11.446 13.136 18.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.010 3.990 3 H 0.089 0.911 4 C -0.174 4.174 5 C -0.081 4.081 6 C -0.129 4.129 7 C -0.031 4.031 8 O -0.333 6.333 9 C 0.137 3.863 10 C -0.587 4.587 11 H 0.080 0.920 12 C -0.191 4.191 13 N -0.569 5.569 14 Si 0.805 3.195 15 H -0.188 1.188 16 H -0.196 1.196 17 H -0.197 1.197 18 C 0.342 3.658 19 O -0.426 6.426 20 O -0.315 6.315 21 C 0.031 3.969 22 H 0.100 0.900 23 C -0.210 4.210 24 O -0.297 6.297 25 H 0.088 0.912 26 H 0.108 0.892 27 H 0.084 0.916 28 H 0.120 0.880 29 H 0.117 0.883 30 H 0.098 0.902 31 H 0.116 0.884 32 H 0.062 0.938 33 H 0.082 0.918 34 H 0.005 0.995 35 H 0.004 0.996 36 H 0.080 0.920 37 H 0.288 0.712 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.543 11.195 13.599 18.466 hybrid contribution 0.914 0.170 -1.115 1.452 sum -4.629 11.366 12.484 17.506 Atomic orbital electron populations 1.21781 0.90950 1.03516 1.03668 1.23315 0.96939 0.94947 0.83836 0.91072 1.23423 0.91950 1.02515 0.99552 1.21827 0.94523 0.94085 0.97620 1.21558 1.04339 0.92893 0.94089 1.22849 1.00310 0.84695 0.95205 1.87754 1.92252 1.28216 1.25065 1.19798 0.93582 0.96328 0.76618 1.21448 1.49741 0.94522 0.93029 0.91987 1.25933 0.94355 1.03534 0.95251 1.70071 1.50001 1.36603 1.00196 0.85154 0.78214 0.77676 0.78475 1.18821 1.19642 1.19739 1.23123 0.81832 0.80416 0.80442 1.90677 1.49764 1.43860 1.58275 1.84671 1.59193 1.62756 1.24891 1.22740 0.85427 0.99078 0.89677 0.89981 1.22067 1.02686 0.94446 1.01845 1.88901 1.27369 1.73825 1.39559 0.91221 0.89236 0.91644 0.88038 0.88338 0.90177 0.88382 0.93818 0.91834 0.99497 0.99594 0.92047 0.71160 0.90975 0.90412 0.90664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.67 71.98 0.70 -1.46 16 2 C 0.07 1.31 3.97 31.28 0.12 1.44 16 3 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 4 C -0.14 -2.85 4.78 31.90 0.15 -2.69 16 5 C -0.08 -1.90 0.67 -51.94 -0.03 -1.94 16 6 C -0.09 -2.56 3.35 30.59 0.10 -2.46 16 7 C 0.05 1.64 5.18 71.98 0.37 2.02 16 8 O -0.41 -19.89 10.33 -148.98 -1.54 -21.43 16 9 C 0.21 11.81 5.69 71.24 0.41 12.22 16 10 C -0.55 -32.56 9.43 25.60 0.24 -32.32 16 11 H 0.06 3.64 7.81 -2.91 -0.02 3.61 16 12 C 0.01 0.45 5.46 84.66 0.46 0.91 16 13 N -0.93 -55.27 13.29 21.45 0.28 -54.98 16 14 Si 0.98 43.90 29.54 68.60 2.03 45.92 16 15 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 16 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 17 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 18 C 0.50 12.66 6.83 71.24 0.49 13.15 16 19 O -0.54 -15.64 16.01 21.96 0.35 -15.29 16 20 O -0.50 -11.30 10.16 -51.43 -0.52 -11.82 16 21 C 0.09 2.09 3.66 30.96 0.11 2.20 16 22 H 0.08 2.12 6.44 -2.38 -0.02 2.11 16 23 C -0.15 -3.20 8.41 71.98 0.61 -2.60 16 24 O -0.38 -9.03 10.89 -148.98 -1.62 -10.65 16 25 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 28 H 0.10 2.10 7.72 -2.39 -0.02 2.08 16 29 H 0.10 1.88 7.80 -2.39 -0.02 1.87 16 30 H 0.08 2.24 6.75 -2.39 -0.02 2.22 16 31 H 0.10 2.63 6.80 -2.39 -0.02 2.61 16 32 H 0.04 1.51 7.41 -2.39 -0.02 1.50 16 33 H 0.06 2.27 5.29 -2.39 -0.01 2.26 16 34 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 35 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 36 H 0.27 14.85 8.31 -92.70 -0.77 14.08 16 37 H 0.43 5.88 9.10 -74.06 -0.67 5.20 16 38 H 0.07 1.50 6.69 -2.38 -0.02 1.48 16 39 H 0.08 1.57 6.88 -2.39 -0.02 1.55 16 40 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -70.70 322.63 3.08 -67.63 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 0.37 Total: 12.15 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: 3.73 Total: -11.53 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: 0.28 Total: -54.98 kcal Atomic # 8 Polarization: -55.86 SS G_CDS: -3.33 Total: -59.19 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Total: -70.70 3.08 -67.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686450539.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.597 kcal (2) G-P(sol) polarization free energy of solvation -70.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds