Wall clock time and date at job start Mon Mar 30 2020 04:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86806 * 119.99755 * 2 1 4 4 H 1.48497 * 109.47289 * 240.00370 * 3 2 1 5 5 H 1.48506 * 109.46807 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47279 * 120.00029 * 3 2 1 7 7 C 1.38789 * 120.00498 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00369 * 179.97438 * 7 2 1 9 9 S 1.76209 * 119.99789 * 359.97438 * 7 2 1 10 10 C 1.81005 * 99.99968 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47036 * 179.97438 * 10 9 7 12 12 O 1.21272 * 120.00003 * 0.02562 * 11 10 9 13 13 N 1.34773 * 119.99932 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00050 * 179.97438 * 13 11 10 15 15 H 1.09001 * 109.47297 * 324.99623 * 14 13 11 16 16 C 1.52997 * 109.47007 * 85.00124 * 14 13 11 17 17 C 1.53002 * 109.46817 * 180.02562 * 16 14 13 18 18 C 1.52996 * 109.46972 * 299.99733 * 17 16 14 19 19 H 1.09000 * 109.47380 * 299.99696 * 18 17 16 20 20 C 1.53002 * 109.46969 * 180.02562 * 18 17 16 21 21 N 1.46905 * 109.47370 * 174.99935 * 20 18 17 22 22 C 1.52997 * 109.47131 * 60.00459 * 18 17 16 23 23 C 1.52999 * 109.46991 * 299.99311 * 22 18 17 24 24 H 0.97001 * 120.00425 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.46826 * 59.99831 * 10 9 7 26 26 H 1.08996 * 109.47399 * 300.00530 * 10 9 7 27 27 H 0.97002 * 119.99920 * 0.02562 * 13 11 10 28 28 H 1.09002 * 109.47153 * 299.99911 * 16 14 13 29 29 H 1.08996 * 109.46952 * 60.00083 * 16 14 13 30 30 H 1.08996 * 109.47407 * 60.00219 * 17 16 14 31 31 H 1.09000 * 109.46986 * 179.97438 * 17 16 14 32 32 H 1.09000 * 109.47173 * 295.00133 * 20 18 17 33 33 H 1.09002 * 109.47125 * 55.00194 * 20 18 17 34 34 H 1.00894 * 111.00321 * 179.97438 * 21 20 18 35 35 H 1.00895 * 110.99572 * 303.95684 * 21 20 18 36 36 H 1.09002 * 109.47153 * 179.97438 * 22 18 17 37 37 H 1.08993 * 109.47194 * 60.00154 * 22 18 17 38 38 H 1.08993 * 109.47839 * 300.00447 * 23 22 18 39 39 H 1.09000 * 109.47160 * 180.02562 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6966 1.2125 7 6 2.0103 -1.2019 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1294 -2.7279 -0.0005 10 6 2.5160 -3.8913 -0.0021 11 6 1.9876 -5.3027 -0.0017 12 8 0.7914 -5.5023 -0.0009 13 7 2.8444 -6.3430 -0.0022 14 6 2.3307 -7.7150 -0.0012 15 1 1.4156 -7.7599 0.5892 16 6 2.0328 -8.1490 -1.4378 17 6 1.4957 -9.5817 -1.4367 18 6 2.5414 -10.5178 -0.8276 19 1 3.4567 -10.4734 -1.4179 20 6 2.0046 -11.9505 -0.8271 21 7 3.0519 -12.8657 -0.3539 22 6 2.8394 -10.0838 0.6090 23 6 3.3765 -8.6512 0.6079 24 1 -0.4851 0.8400 0.0004 25 1 3.1253 -3.7316 0.8874 26 1 3.1240 -3.7308 -0.8924 27 1 3.8012 -6.1833 -0.0025 28 1 1.2875 -7.4823 -1.8716 29 1 2.9480 -8.1041 -2.0281 30 1 0.5805 -9.6262 -0.8465 31 1 1.2830 -9.8907 -2.4601 32 1 1.1404 -12.0145 -0.1660 33 1 1.7094 -12.2283 -1.8389 34 1 2.7216 -13.8190 -0.3439 35 1 3.8878 -12.7781 -0.9121 36 1 3.5840 -10.7510 1.0431 37 1 1.9242 -10.1283 1.1992 38 1 4.2917 -8.6066 0.0177 39 1 3.5892 -8.3421 1.6313 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687676237.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:06 Heat of formation + Delta-G solvation = -92.936375 kcal Electronic energy + Delta-G solvation = -18496.633190 eV Core-core repulsion = 15562.770395 eV Total energy + Delta-G solvation = -2933.862795 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.02720 -39.36846 -36.24578 -34.58982 -34.18957 -31.75628 -31.41843 -29.44394 -27.65967 -25.20517 -23.63112 -22.21705 -21.54410 -20.82417 -19.78394 -17.81893 -17.55981 -16.88269 -16.78527 -16.39381 -15.93340 -15.63134 -15.33553 -15.15578 -14.91223 -14.63465 -14.54265 -13.76950 -13.60342 -13.23635 -13.17071 -13.14464 -12.87173 -12.83880 -12.61103 -12.07629 -12.04234 -11.76462 -11.56756 -11.30977 -11.17456 -11.12904 -10.82202 -10.28238 -10.03301 -9.50938 -8.67273 -8.34586 -6.13116 1.26951 1.43975 1.46891 1.56870 1.62944 2.26512 2.31490 2.99269 3.32058 3.59949 3.73417 3.76516 3.98042 4.03758 4.15201 4.30492 4.35151 4.40457 4.50325 4.51446 4.57491 4.60221 4.74951 4.80728 4.91357 5.06116 5.15564 5.16735 5.23023 5.33209 5.41174 5.48076 5.53389 5.60651 6.19437 6.29194 6.55105 6.66383 7.06301 7.28161 8.74449 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.064639 B = 0.002954 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.071702 B = 9477.239717 C = 9670.325241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 1.000 3.000 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.547 4.547 8 H 0.083 0.917 9 S -0.153 6.153 10 C -0.129 4.129 11 C 0.533 3.467 12 O -0.566 6.566 13 N -0.710 5.710 14 C 0.144 3.856 15 H 0.057 0.943 16 C -0.124 4.124 17 C -0.107 4.107 18 C -0.079 4.079 19 H 0.079 0.921 20 C 0.067 3.933 21 N -0.855 5.855 22 C -0.096 4.096 23 C -0.116 4.116 24 H 0.271 0.729 25 H 0.109 0.891 26 H 0.109 0.891 27 H 0.415 0.585 28 H 0.036 0.964 29 H 0.077 0.923 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.031 0.969 34 H 0.348 0.652 35 H 0.346 0.654 36 H 0.084 0.916 37 H 0.050 0.950 38 H 0.086 0.914 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.632 -23.578 -2.119 26.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.821 3.179 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.695 4.695 8 H 0.101 0.899 9 S 0.074 5.926 10 C -0.280 4.280 11 C 0.319 3.681 12 O -0.445 6.445 13 N -0.363 5.363 14 C 0.040 3.960 15 H 0.075 0.925 16 C -0.163 4.163 17 C -0.146 4.146 18 C -0.097 4.097 19 H 0.097 0.903 20 C -0.064 4.064 21 N -0.386 5.386 22 C -0.134 4.134 23 C -0.154 4.154 24 H 0.080 0.920 25 H 0.127 0.873 26 H 0.127 0.873 27 H 0.252 0.748 28 H 0.055 0.945 29 H 0.096 0.904 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.049 0.951 34 H 0.161 0.839 35 H 0.159 0.841 36 H 0.103 0.897 37 H 0.069 0.931 38 H 0.104 0.896 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.460 -23.423 -1.429 25.301 hybrid contribution 1.475 1.089 -0.960 2.070 sum 10.935 -22.333 -2.389 24.981 Atomic orbital electron populations 1.70180 1.08001 1.28687 1.47957 1.26151 0.95988 1.03387 0.93725 0.84991 0.77789 0.75601 0.79524 1.18608 1.20390 1.18623 1.23173 0.95344 0.91980 1.58962 0.89893 1.85586 1.10691 0.99287 1.97055 1.23378 1.03485 0.94441 1.06726 1.20089 0.86333 0.86735 0.74986 1.90680 1.17460 1.86091 1.50221 1.45885 1.10175 1.05043 1.75228 1.21066 0.98009 0.80075 0.96842 0.92468 1.21845 1.01303 0.96836 0.96290 1.21481 0.98463 0.93246 1.01406 1.21136 0.98462 0.93427 0.96725 0.90278 1.21768 0.94576 0.92047 0.97998 1.58666 1.08096 1.10682 1.61175 1.21378 1.01386 0.94336 0.96323 1.21783 0.97748 0.94532 1.01372 0.91985 0.87267 0.87267 0.74786 0.94527 0.90394 0.92714 0.90951 0.91767 0.95056 0.83884 0.84098 0.89725 0.93126 0.89592 0.91105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.62 13.22 21.65 0.29 -56.33 16 2 C 0.01 0.70 5.49 84.86 0.47 1.16 16 3 Si 1.00 43.85 29.55 68.60 2.03 45.88 16 4 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 5 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 6 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 7 C -0.55 -31.56 9.50 67.95 0.65 -30.91 16 8 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 9 S -0.15 -8.66 20.57 -56.49 -1.16 -9.82 16 10 C -0.13 -5.21 6.16 71.24 0.44 -4.77 16 11 C 0.53 20.22 7.81 87.66 0.68 20.90 16 12 O -0.57 -27.00 15.52 -3.01 -0.05 -27.05 16 13 N -0.71 -18.54 5.08 -442.54 -2.25 -20.79 16 14 C 0.14 3.40 2.45 44.99 0.11 3.52 16 15 H 0.06 1.72 7.58 -2.39 -0.02 1.70 16 16 C -0.12 -2.76 5.49 30.59 0.17 -2.60 16 17 C -0.11 -1.89 5.20 30.59 0.16 -1.73 16 18 C -0.08 -1.07 2.33 -10.79 -0.03 -1.09 16 19 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 20 C 0.07 0.81 6.18 86.30 0.53 1.34 16 21 N -0.86 -8.55 9.08 -186.70 -1.70 -10.25 16 22 C -0.10 -1.45 5.09 30.59 0.16 -1.29 16 23 C -0.12 -1.86 5.39 30.60 0.17 -1.70 16 24 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 25 H 0.11 3.96 8.14 -2.40 -0.02 3.94 16 26 H 0.11 3.96 8.14 -2.40 -0.02 3.94 16 27 H 0.42 7.80 8.60 -92.71 -0.80 7.00 16 28 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.05 1.09 8.14 -2.39 -0.02 1.08 16 31 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.03 0.35 8.14 -2.39 -0.02 0.33 16 34 H 0.35 2.59 9.08 -89.70 -0.81 1.78 16 35 H 0.35 2.64 8.99 -89.70 -0.81 1.83 16 36 H 0.08 1.20 7.75 -2.39 -0.02 1.18 16 37 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -75.84 331.27 -0.70 -76.54 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: -1.36 Total: 18.98 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: 3.50 Total: -17.16 kcal Atomic # 7 Polarization: -83.71 SS G_CDS: -3.66 Total: -87.37 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: -0.05 Total: -27.05 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: -8.66 SS G_CDS: -1.16 Total: -9.82 kcal Total: -75.84 -0.70 -76.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687676237.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.396 kcal (2) G-P(sol) polarization free energy of solvation -75.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds