Wall clock time and date at job start Mon Mar 30 2020 05:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.57510 * 2 1 4 4 C 1.53099 * 109.68178 * 120.31624 * 2 1 3 5 5 C 1.52628 * 109.87424 * 182.93675 * 4 2 1 6 6 C 1.52580 * 110.69965 * 289.18475 * 5 4 2 7 7 H 1.08999 * 109.39249 * 310.71679 * 6 5 4 8 8 N 1.46901 * 109.38595 * 190.92180 * 6 5 4 9 9 C 1.46902 * 110.99844 * 154.79822 * 8 6 5 10 10 C 1.50702 * 109.47027 * 179.97438 * 9 8 6 11 11 O 1.21283 * 120.00262 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99928 * 179.72353 * 10 9 8 13 13 C 1.46499 * 120.00199 * 180.27479 * 12 10 9 14 14 C 1.50694 * 109.47550 * 180.02562 * 13 12 10 15 15 H 1.08008 * 119.99963 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00446 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99703 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00230 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46919 * 60.00155 * 18 16 14 20 20 H 1.48496 * 109.47105 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47194 * 300.00219 * 18 16 14 22 22 C 1.53094 * 109.87900 * 70.82365 * 6 5 4 23 23 S 1.81740 * 109.58047 * 239.73967 * 2 1 3 24 24 H 1.08999 * 109.47090 * 180.25927 * 1 2 3 25 25 H 1.08997 * 109.47707 * 300.26067 * 1 2 3 26 26 H 1.08998 * 109.47184 * 60.26357 * 1 2 3 27 27 H 1.09001 * 109.38985 * 303.04736 * 4 2 1 28 28 H 1.08997 * 109.38673 * 62.84828 * 4 2 1 29 29 H 1.09000 * 109.15790 * 168.91602 * 5 4 2 30 30 H 1.09000 * 109.31557 * 49.54796 * 5 4 2 31 31 H 1.00895 * 111.00207 * 278.75165 * 8 6 5 32 32 H 1.09004 * 109.47131 * 60.00016 * 9 8 6 33 33 H 1.08994 * 109.47471 * 299.99766 * 9 8 6 34 34 H 0.97000 * 120.00317 * 0.28382 * 12 10 9 35 35 H 1.08998 * 109.47134 * 300.00670 * 13 12 10 36 36 H 1.09002 * 109.46857 * 59.99862 * 13 12 10 37 37 H 0.97000 * 119.99614 * 179.97438 * 17 16 14 38 38 H 1.08998 * 109.57818 * 56.73315 * 22 6 5 39 39 H 1.09002 * 109.57512 * 176.99259 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8951 1.0270 0.0000 4 6 2.0456 -0.7277 1.2444 5 6 3.5701 -0.6671 1.2865 6 6 4.1752 -1.5523 0.2010 7 1 3.7133 -2.5389 0.2394 8 7 5.6209 -1.6817 0.4271 9 6 6.1369 -2.9241 -0.1631 10 6 7.6197 -3.0214 0.0878 11 8 8.1904 -2.1427 0.6986 12 7 8.3105 -4.0880 -0.3612 13 6 9.7509 -4.1856 -0.1120 14 6 10.2794 -5.4624 -0.7132 15 1 9.6094 -6.1339 -1.2297 16 6 11.6184 -5.7729 -0.6049 17 7 12.4343 -4.9550 0.0235 18 14 12.2736 -7.3553 -1.3508 19 1 12.0230 -7.3534 -2.8146 20 1 13.7335 -7.4542 -1.0981 21 1 11.5848 -8.5164 -0.7322 22 6 3.9298 -0.9293 -1.1757 23 16 2.1390 -0.8629 -1.4790 24 1 -0.3633 -1.0276 0.0047 25 1 -0.3634 0.5178 0.8876 26 1 -0.3633 0.5097 -0.8923 27 1 1.6395 -0.2510 2.1366 28 1 1.7256 -1.7691 1.2131 29 1 3.9149 -1.0091 2.2623 30 1 3.8944 0.3621 1.1325 31 1 6.1161 -0.8787 0.0695 32 1 5.9499 -2.9212 -1.2370 33 1 5.6344 -3.7781 0.2909 34 1 7.8541 -4.7910 -0.8495 35 1 10.2568 -3.3338 -0.5665 36 1 9.9345 -4.1862 0.9624 37 1 13.3762 -5.1737 0.1000 38 1 4.3418 0.0796 -1.1987 39 1 4.4097 -1.5373 -1.9425 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689527990.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:40 Heat of formation + Delta-G solvation = -56.953296 kcal Electronic energy + Delta-G solvation = -18405.793401 eV Core-core repulsion = 15473.490949 eV Total energy + Delta-G solvation = -2932.302451 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.11714 -37.90198 -35.25150 -34.14783 -32.35831 -31.71220 -28.94247 -27.76934 -26.02451 -24.35657 -22.38712 -21.84035 -20.97363 -19.67232 -17.35756 -17.03620 -16.11642 -15.70921 -15.27359 -15.02869 -14.94837 -14.45314 -14.33765 -14.13474 -13.94379 -13.57995 -13.13373 -12.73988 -12.47644 -12.28203 -12.07225 -11.92924 -11.60396 -11.51458 -11.33530 -11.17422 -11.02135 -10.90273 -10.86856 -10.32907 -10.10471 -9.42322 -9.08694 -8.74176 -8.56501 -7.89919 -7.85968 -6.17357 -4.24535 1.44176 2.22859 3.24660 3.29470 3.30909 3.35423 3.73358 4.25600 4.27552 4.39205 4.43147 4.54870 4.66318 4.82741 5.01360 5.07046 5.18543 5.21774 5.25435 5.28775 5.36982 5.44196 5.48990 5.55722 5.63627 5.66574 5.73294 5.90701 6.00375 6.80427 7.26105 7.31320 7.42771 7.50941 7.65814 7.96316 8.61503 8.77181 9.09354 9.42133 10.92801 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.049181 B = 0.002810 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.186438 B = 9961.649299 C =10261.194756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.054 4.054 3 H 0.087 0.913 4 C -0.116 4.116 5 C -0.119 4.119 6 C 0.090 3.910 7 H 0.091 0.909 8 N -0.661 5.661 9 C 0.038 3.962 10 C 0.496 3.504 11 O -0.544 6.544 12 N -0.714 5.714 13 C 0.251 3.749 14 C -0.544 4.544 15 H 0.062 0.938 16 C 0.063 3.937 17 N -0.886 5.886 18 Si 0.904 3.096 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 C -0.115 4.115 23 S -0.261 6.261 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.063 0.937 31 H 0.352 0.648 32 H 0.054 0.946 33 H 0.098 0.902 34 H 0.390 0.610 35 H 0.026 0.974 36 H 0.027 0.973 37 H 0.267 0.733 38 H 0.085 0.915 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.149 8.069 -0.829 24.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.183 4.183 3 H 0.105 0.895 4 C -0.155 4.155 5 C -0.157 4.157 6 C -0.021 4.021 7 H 0.109 0.891 8 N -0.293 5.293 9 C -0.094 4.094 10 C 0.280 3.720 11 O -0.422 6.422 12 N -0.363 5.363 13 C 0.130 3.870 14 C -0.583 4.583 15 H 0.080 0.920 16 C -0.140 4.140 17 N -0.523 5.523 18 Si 0.731 3.269 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.200 1.200 22 C -0.265 4.265 23 S -0.035 6.035 24 H 0.084 0.916 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.103 0.897 30 H 0.082 0.918 31 H 0.172 0.828 32 H 0.072 0.928 33 H 0.116 0.884 34 H 0.222 0.778 35 H 0.044 0.956 36 H 0.045 0.955 37 H 0.076 0.924 38 H 0.104 0.896 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -23.119 8.065 -0.586 24.492 hybrid contribution 1.011 -0.498 -0.706 1.330 sum -22.108 7.566 -1.292 23.402 Atomic orbital electron populations 1.21607 0.91918 1.03100 1.02554 1.23242 0.99315 1.01054 0.94641 0.89458 1.21840 0.95638 1.01489 0.96549 1.21513 0.93879 1.00015 1.00282 1.21856 0.89259 0.99909 0.91122 0.89131 1.60294 1.01917 1.04703 1.62368 1.21910 0.94556 0.94598 0.98358 1.20330 0.88354 0.83058 0.80262 1.90668 1.70831 1.39751 1.40959 1.46450 1.12280 1.21640 1.55917 1.19087 0.73589 0.97137 0.97165 1.21191 0.94109 1.05590 1.37379 0.91958 1.24958 0.96643 0.97351 0.95078 1.69967 1.04705 1.36468 1.41139 0.86469 0.77881 0.82961 0.79560 1.20073 1.21055 1.20043 1.24364 0.94694 1.05019 1.02463 1.86914 1.06765 1.78117 1.31683 0.91558 0.91105 0.91846 0.90592 0.90503 0.89655 0.91831 0.82785 0.92779 0.88388 0.77762 0.95622 0.95513 0.92375 0.89630 0.87904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.83 9.23 37.16 0.34 -0.49 16 2 C -0.05 -0.41 3.11 -26.68 -0.08 -0.49 16 3 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 4 C -0.12 -0.85 5.05 -26.87 -0.14 -0.99 16 5 C -0.12 -1.07 5.21 -27.14 -0.14 -1.21 16 6 C 0.09 0.90 2.32 -67.88 -0.16 0.75 16 7 H 0.09 0.92 7.70 -51.93 -0.40 0.52 16 8 N -0.66 -8.56 5.86 -108.17 -0.63 -9.19 16 9 C 0.04 0.52 5.96 -4.97 -0.03 0.49 16 10 C 0.50 9.68 7.87 -10.98 -0.09 9.60 16 11 O -0.54 -12.96 16.20 5.55 0.09 -12.87 16 12 N -0.71 -14.82 5.55 -61.47 -0.34 -15.17 16 13 C 0.25 6.65 5.43 -5.20 -0.03 6.62 16 14 C -0.54 -14.76 9.28 -34.44 -0.32 -15.08 16 15 H 0.06 1.57 7.60 -52.48 -0.40 1.17 16 16 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 17 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 18 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 19 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 22 C -0.12 -1.10 5.70 37.21 0.21 -0.89 16 23 S -0.26 -2.54 21.70 -107.50 -2.33 -4.87 16 24 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.08 0.59 8.05 -51.93 -0.42 0.17 16 29 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 31 H 0.35 4.76 8.18 -39.29 -0.32 4.44 16 32 H 0.05 0.63 7.37 -51.93 -0.38 0.25 16 33 H 0.10 1.19 8.05 -51.93 -0.42 0.77 16 34 H 0.39 6.88 8.32 -40.82 -0.34 6.54 16 35 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.10 1.00 7.38 -51.93 -0.38 0.62 16 LS Contribution 330.38 15.07 4.98 4.98 Total: -1.00 -31.63 330.38 -9.47 -41.10 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -6.42 Total: 5.62 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -0.52 Total: -0.01 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: -0.24 Total: -49.76 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: 0.09 Total: -12.87 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: -2.54 SS G_CDS: -2.33 Total: -4.87 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.63 -9.47 -41.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689527990.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.851 kcal (2) G-P(sol) polarization free energy of solvation -31.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds