Wall clock time and date at job start Mon Mar 30 2020 05:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.57709 * 2 1 4 4 C 1.53096 * 109.68196 * 239.67646 * 2 1 3 5 5 C 1.52582 * 109.95432 * 303.15543 * 4 2 1 6 6 C 1.52582 * 110.72863 * 289.32466 * 5 4 2 7 7 H 1.09000 * 109.38492 * 310.52737 * 6 5 4 8 8 N 1.46898 * 109.31230 * 190.77662 * 6 5 4 9 9 C 1.46895 * 111.00414 * 154.55372 * 8 6 5 10 10 C 1.50700 * 109.47538 * 179.97438 * 9 8 6 11 11 O 1.21283 * 119.99785 * 359.97438 * 10 9 8 12 12 N 1.34768 * 119.99931 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99834 * 180.02562 * 12 10 9 14 14 C 1.50702 * 109.47214 * 179.97438 * 13 12 10 15 15 H 1.08003 * 120.00166 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00003 * 179.97438 * 14 13 12 17 17 N 1.31506 * 120.00075 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99933 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46824 * 89.99974 * 18 16 14 20 20 H 1.48497 * 109.47012 * 210.00027 * 18 16 14 21 21 H 1.48498 * 109.46826 * 329.99986 * 18 16 14 22 22 C 1.53089 * 109.95694 * 70.67501 * 6 5 4 23 23 S 1.81745 * 109.57403 * 120.25610 * 2 1 3 24 24 H 1.09000 * 109.46938 * 300.00556 * 1 2 3 25 25 H 1.09002 * 109.46905 * 60.00021 * 1 2 3 26 26 H 1.09001 * 109.47342 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.39304 * 63.30514 * 4 2 1 28 28 H 1.09004 * 109.39260 * 183.00776 * 4 2 1 29 29 H 1.09004 * 109.22405 * 169.00099 * 5 4 2 30 30 H 1.08996 * 109.19566 * 49.62501 * 5 4 2 31 31 H 1.00902 * 111.00060 * 278.50998 * 8 6 5 32 32 H 1.09005 * 109.47015 * 300.00037 * 9 8 6 33 33 H 1.09003 * 109.47434 * 59.99535 * 9 8 6 34 34 H 0.97005 * 120.00752 * 359.97438 * 12 10 9 35 35 H 1.09005 * 109.47003 * 299.99395 * 13 12 10 36 36 H 1.09000 * 109.47245 * 60.00073 * 13 12 10 37 37 H 0.97003 * 120.00387 * 180.02562 * 17 16 14 38 38 H 1.08994 * 109.57771 * 177.17206 * 22 6 5 39 39 H 1.09001 * 109.68295 * 56.84682 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0456 -0.7278 -1.2443 5 6 1.4824 -2.1452 -1.2893 6 6 2.1121 -3.0113 -0.2024 7 1 3.1964 -2.9061 -0.2389 8 7 1.7505 -4.4166 -0.4308 9 6 2.7498 -5.3195 0.1558 10 6 2.3456 -6.7490 -0.0974 11 8 1.3251 -6.9918 -0.7062 12 7 3.1174 -7.7575 0.3535 13 6 2.7247 -9.1472 0.1068 14 6 3.7499 -10.0733 0.7087 15 1 4.6080 -9.6674 1.2239 16 6 3.5919 -11.4389 0.6026 17 7 2.5468 -11.9332 -0.0242 18 14 4.8623 -12.5870 1.3493 19 1 4.4824 -12.9017 2.7500 20 1 4.9207 -13.8424 0.5583 21 1 6.1937 -11.9294 1.3333 22 6 1.6050 -2.5732 1.1740 23 16 2.1389 -0.8628 1.4792 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.7326 -0.1855 -2.1365 28 1 3.1343 -0.7718 -1.2127 29 1 1.6926 -2.5840 -2.2647 30 1 0.4037 -2.1071 -1.1379 31 1 0.8286 -4.6157 -0.0721 32 1 3.7220 -5.1303 -0.2995 33 1 2.8115 -5.1446 1.2299 34 1 3.9335 -7.5634 0.8407 35 1 1.7523 -9.3361 0.5617 36 1 2.6636 -9.3223 -0.9673 37 1 2.4354 -12.8939 -0.0986 38 1 2.0192 -3.2274 1.9411 39 1 0.5165 -2.6257 1.1980 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689527993.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:44 Heat of formation + Delta-G solvation = -53.324927 kcal Electronic energy + Delta-G solvation = -18570.677055 eV Core-core repulsion = 15638.531941 eV Total energy + Delta-G solvation = -2932.145114 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.16351 -38.09131 -35.26516 -34.13989 -32.34737 -31.20493 -29.06603 -27.75229 -25.98547 -24.90185 -22.50187 -21.92825 -20.44697 -19.62931 -17.26320 -17.04051 -16.14467 -15.71913 -15.53468 -15.24379 -14.88226 -14.39073 -14.34592 -13.85970 -13.80761 -13.45310 -13.33120 -12.75205 -12.52230 -12.31129 -12.18187 -11.93918 -11.66990 -11.51907 -11.40130 -11.00957 -10.90559 -10.87337 -10.78876 -10.32938 -10.08331 -9.40977 -9.08536 -8.74774 -8.55852 -7.90089 -7.86172 -6.17695 -4.24770 1.47759 2.20396 3.23408 3.29553 3.31985 3.35503 3.73541 4.25309 4.32168 4.38212 4.44121 4.55377 4.65646 4.79305 5.03275 5.08871 5.15839 5.18430 5.28743 5.31660 5.38601 5.47283 5.50193 5.57439 5.63094 5.65999 5.72841 5.91844 6.07900 6.80884 7.26191 7.31336 7.42750 7.50789 7.65842 7.96017 8.61494 8.77170 9.09326 9.42007 10.92518 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.047127 B = 0.002902 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.000754 B = 9646.700756 C = 9932.870607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.054 4.054 3 H 0.108 0.892 4 C -0.115 4.115 5 C -0.122 4.122 6 C 0.091 3.909 7 H 0.090 0.910 8 N -0.661 5.661 9 C 0.038 3.962 10 C 0.496 3.504 11 O -0.544 6.544 12 N -0.714 5.714 13 C 0.251 3.749 14 C -0.544 4.544 15 H 0.063 0.937 16 C 0.063 3.937 17 N -0.885 5.885 18 Si 0.904 3.096 19 H -0.279 1.279 20 H -0.284 1.284 21 H -0.272 1.272 22 C -0.114 4.114 23 S -0.261 6.261 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.352 0.648 32 H 0.098 0.902 33 H 0.054 0.946 34 H 0.390 0.610 35 H 0.026 0.974 36 H 0.027 0.973 37 H 0.266 0.734 38 H 0.102 0.898 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.685 23.896 0.870 23.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.182 4.182 3 H 0.126 0.874 4 C -0.155 4.155 5 C -0.160 4.160 6 C -0.021 4.021 7 H 0.108 0.892 8 N -0.293 5.293 9 C -0.094 4.094 10 C 0.280 3.720 11 O -0.422 6.422 12 N -0.363 5.363 13 C 0.130 3.870 14 C -0.582 4.582 15 H 0.081 0.919 16 C -0.140 4.140 17 N -0.523 5.523 18 Si 0.731 3.269 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.197 1.197 22 C -0.264 4.264 23 S -0.034 6.034 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.103 0.897 30 H 0.087 0.913 31 H 0.172 0.828 32 H 0.116 0.884 33 H 0.072 0.928 34 H 0.222 0.778 35 H 0.044 0.956 36 H 0.045 0.955 37 H 0.076 0.924 38 H 0.120 0.880 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.674 23.877 0.631 23.894 hybrid contribution 0.196 -1.055 0.689 1.275 sum -0.478 22.822 1.320 22.865 Atomic orbital electron populations 1.22128 0.93219 1.02914 1.02594 1.23216 0.98830 1.01447 0.94719 0.87438 1.21764 1.01574 0.95599 0.96516 1.21571 1.00746 0.93526 1.00189 1.21847 1.00814 0.88315 0.91121 0.89185 1.60296 1.05804 1.00761 1.62412 1.21909 0.97351 0.91788 0.98376 1.20329 0.84701 0.86725 0.80247 1.90668 1.25505 1.84978 1.41073 1.46450 1.25589 1.08338 1.55907 1.19094 0.96204 0.74523 0.97187 1.21230 1.08403 0.91253 1.37333 0.91904 1.24956 0.95853 0.98156 0.95064 1.69971 1.27961 1.13143 1.41206 0.86413 0.81332 0.80088 0.79073 1.20467 1.20979 1.19727 1.24362 1.04327 0.95316 1.02430 1.86888 1.77402 1.07309 1.31803 0.91630 0.91680 0.91797 0.90625 0.90578 0.89742 0.91260 0.82812 0.88402 0.92781 0.77758 0.95615 0.95514 0.92427 0.87964 0.89583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 8.73 37.16 0.32 -0.70 16 2 C -0.05 -0.40 3.44 -26.68 -0.09 -0.49 16 3 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 4 C -0.12 -0.84 5.32 -26.90 -0.14 -0.98 16 5 C -0.12 -1.08 5.06 -27.16 -0.14 -1.22 16 6 C 0.09 0.90 2.32 -67.88 -0.16 0.74 16 7 H 0.09 0.91 7.71 -51.93 -0.40 0.51 16 8 N -0.66 -8.49 5.86 -108.17 -0.63 -9.12 16 9 C 0.04 0.52 5.96 -4.98 -0.03 0.49 16 10 C 0.50 9.66 7.87 -10.99 -0.09 9.58 16 11 O -0.54 -12.94 16.20 5.56 0.09 -12.85 16 12 N -0.71 -14.80 5.55 -61.47 -0.34 -15.14 16 13 C 0.25 6.64 5.43 -5.19 -0.03 6.61 16 14 C -0.54 -14.73 9.28 -34.44 -0.32 -15.05 16 15 H 0.06 1.59 7.60 -52.48 -0.40 1.19 16 16 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 17 N -0.89 -26.12 13.29 55.43 0.74 -25.39 16 18 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 22 C -0.11 -1.07 5.33 37.20 0.20 -0.88 16 23 S -0.26 -2.50 21.75 -107.50 -2.34 -4.84 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.48 5.18 -51.93 -0.27 0.21 16 27 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.08 0.57 8.06 -51.93 -0.42 0.16 16 29 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.61 5.84 -51.93 -0.30 0.31 16 31 H 0.35 4.72 8.18 -39.29 -0.32 4.40 16 32 H 0.10 1.19 8.05 -51.93 -0.42 0.77 16 33 H 0.05 0.63 7.39 -51.93 -0.38 0.24 16 34 H 0.39 6.87 8.32 -40.82 -0.34 6.53 16 35 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.10 0.99 7.39 -51.93 -0.38 0.60 16 39 H 0.09 0.79 7.44 -51.93 -0.39 0.40 16 LS Contribution 324.15 15.07 4.88 4.88 Total: -1.00 -31.59 324.15 -9.31 -40.90 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -6.12 Total: 5.99 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -0.57 Total: -0.24 kcal Atomic # 7 Polarization: -49.41 SS G_CDS: -0.24 Total: -49.65 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.09 Total: -12.85 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: -2.50 SS G_CDS: -2.34 Total: -4.84 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.59 -9.31 -40.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689527993.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.428 kcal (2) G-P(sol) polarization free energy of solvation -31.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds