Wall clock time and date at job start Mon Mar 30 2020 05:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.57709 * 2 1 4 4 C 1.53096 * 109.68196 * 239.67646 * 2 1 3 5 5 C 1.52582 * 109.95432 * 303.15543 * 4 2 1 6 6 C 1.52582 * 110.72863 * 289.32466 * 5 4 2 7 7 H 1.09000 * 109.38492 * 310.52737 * 6 5 4 8 8 N 1.46898 * 109.31230 * 190.77662 * 6 5 4 9 9 C 1.46895 * 111.00414 * 154.55372 * 8 6 5 10 10 C 1.50700 * 109.47538 * 179.97438 * 9 8 6 11 11 O 1.21283 * 119.99785 * 359.97438 * 10 9 8 12 12 N 1.34768 * 119.99931 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99834 * 180.02562 * 12 10 9 14 14 C 1.50702 * 109.47214 * 179.97438 * 13 12 10 15 15 H 1.08003 * 120.00166 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00003 * 179.97438 * 14 13 12 17 17 N 1.31506 * 120.00075 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99933 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46824 * 89.99974 * 18 16 14 20 20 H 1.48497 * 109.47012 * 210.00027 * 18 16 14 21 21 H 1.48498 * 109.46826 * 329.99986 * 18 16 14 22 22 C 1.53089 * 109.95694 * 70.67501 * 6 5 4 23 23 S 1.81745 * 109.57403 * 120.25610 * 2 1 3 24 24 H 1.09000 * 109.46938 * 300.00556 * 1 2 3 25 25 H 1.09002 * 109.46905 * 60.00021 * 1 2 3 26 26 H 1.09001 * 109.47342 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.39304 * 63.30514 * 4 2 1 28 28 H 1.09004 * 109.39260 * 183.00776 * 4 2 1 29 29 H 1.09004 * 109.22405 * 169.00099 * 5 4 2 30 30 H 1.08996 * 109.19566 * 49.62501 * 5 4 2 31 31 H 1.00902 * 111.00060 * 278.50998 * 8 6 5 32 32 H 1.09005 * 109.47015 * 300.00037 * 9 8 6 33 33 H 1.09003 * 109.47434 * 59.99535 * 9 8 6 34 34 H 0.97005 * 120.00752 * 359.97438 * 12 10 9 35 35 H 1.09005 * 109.47003 * 299.99395 * 13 12 10 36 36 H 1.09000 * 109.47245 * 60.00073 * 13 12 10 37 37 H 0.97003 * 120.00387 * 180.02562 * 17 16 14 38 38 H 1.08994 * 109.57771 * 177.17206 * 22 6 5 39 39 H 1.09001 * 109.68295 * 56.84682 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0456 -0.7278 -1.2443 5 6 1.4824 -2.1452 -1.2893 6 6 2.1121 -3.0113 -0.2024 7 1 3.1964 -2.9061 -0.2389 8 7 1.7505 -4.4166 -0.4308 9 6 2.7498 -5.3195 0.1558 10 6 2.3456 -6.7490 -0.0974 11 8 1.3251 -6.9918 -0.7062 12 7 3.1174 -7.7575 0.3535 13 6 2.7247 -9.1472 0.1068 14 6 3.7499 -10.0733 0.7087 15 1 4.6080 -9.6674 1.2239 16 6 3.5919 -11.4389 0.6026 17 7 2.5468 -11.9332 -0.0242 18 14 4.8623 -12.5870 1.3493 19 1 4.4824 -12.9017 2.7500 20 1 4.9207 -13.8424 0.5583 21 1 6.1937 -11.9294 1.3333 22 6 1.6050 -2.5732 1.1740 23 16 2.1389 -0.8628 1.4792 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.7326 -0.1855 -2.1365 28 1 3.1343 -0.7718 -1.2127 29 1 1.6926 -2.5840 -2.2647 30 1 0.4037 -2.1071 -1.1379 31 1 0.8286 -4.6157 -0.0721 32 1 3.7220 -5.1303 -0.2995 33 1 2.8115 -5.1446 1.2299 34 1 3.9335 -7.5634 0.8407 35 1 1.7523 -9.3361 0.5617 36 1 2.6636 -9.3223 -0.9673 37 1 2.4354 -12.8939 -0.0986 38 1 2.0192 -3.2274 1.9411 39 1 0.5165 -2.6257 1.1980 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689527993.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:44 Heat of formation + Delta-G solvation = -76.150666 kcal Electronic energy + Delta-G solvation = -18571.666853 eV Core-core repulsion = 15638.531941 eV Total energy + Delta-G solvation = -2933.134912 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.61812 -39.07555 -36.30189 -35.88841 -34.34744 -32.13967 -29.88903 -29.43300 -27.19226 -25.81148 -24.30768 -22.78367 -21.52394 -20.96022 -18.97125 -17.82783 -17.62353 -17.07644 -16.85489 -16.47052 -16.23040 -15.57703 -15.53755 -14.97130 -14.81421 -14.31631 -14.22539 -14.10646 -13.99654 -13.87101 -13.16195 -13.05410 -12.91964 -12.82103 -12.70250 -12.36022 -12.23248 -12.06207 -11.62818 -11.49227 -11.44234 -10.81752 -10.80360 -10.70249 -9.83601 -9.49777 -8.63933 -8.29696 -6.46369 0.78746 1.42919 1.45245 1.51782 1.56558 1.77702 2.28737 2.49200 3.05253 3.23148 3.58731 3.79139 3.86041 3.91257 3.98508 4.17211 4.23271 4.37901 4.41006 4.48249 4.56039 4.69164 4.78505 4.85939 5.00348 5.05410 5.10393 5.15605 5.22012 5.24020 5.42348 5.48427 5.67654 5.84436 5.91241 6.24381 6.65056 6.93050 7.23267 7.50872 8.82539 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.047127 B = 0.002902 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.000754 B = 9646.700756 C = 9932.870607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.045 4.045 3 H 0.120 0.880 4 C -0.109 4.109 5 C -0.120 4.120 6 C 0.097 3.903 7 H 0.093 0.907 8 N -0.675 5.675 9 C 0.055 3.945 10 C 0.493 3.507 11 O -0.592 6.592 12 N -0.709 5.709 13 C 0.267 3.733 14 C -0.556 4.556 15 H 0.084 0.916 16 C 0.003 3.997 17 N -0.931 5.931 18 Si 0.985 3.015 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.255 1.255 22 C -0.106 4.106 23 S -0.290 6.290 24 H 0.064 0.936 25 H 0.079 0.921 26 H 0.055 0.945 27 H 0.092 0.908 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.347 0.653 32 H 0.121 0.879 33 H 0.083 0.917 34 H 0.409 0.591 35 H -0.013 1.013 36 H -0.014 1.014 37 H 0.269 0.731 38 H 0.101 0.899 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.074 25.436 1.683 25.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.174 4.174 3 H 0.138 0.862 4 C -0.148 4.148 5 C -0.158 4.158 6 C -0.014 4.014 7 H 0.111 0.889 8 N -0.307 5.307 9 C -0.077 4.077 10 C 0.280 3.720 11 O -0.473 6.473 12 N -0.359 5.359 13 C 0.144 3.856 14 C -0.594 4.594 15 H 0.102 0.898 16 C -0.197 4.197 17 N -0.570 5.570 18 Si 0.808 3.192 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.179 1.179 22 C -0.256 4.256 23 S -0.063 6.063 24 H 0.083 0.917 25 H 0.098 0.902 26 H 0.073 0.927 27 H 0.111 0.889 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.166 0.834 32 H 0.139 0.861 33 H 0.101 0.899 34 H 0.244 0.756 35 H 0.005 0.995 36 H 0.004 0.996 37 H 0.078 0.922 38 H 0.119 0.881 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.119 25.476 1.464 25.542 hybrid contribution -0.423 -1.452 0.388 1.561 sum 0.696 24.024 1.853 24.105 Atomic orbital electron populations 1.22109 0.92740 1.02554 1.03277 1.23295 0.99131 1.01625 0.93312 0.86189 1.21726 1.01458 0.94539 0.97116 1.21549 1.00817 0.94312 0.99138 1.21854 1.01041 0.86623 0.91843 0.88855 1.60320 1.05409 1.02161 1.62828 1.21813 0.98162 0.87272 1.00420 1.21408 0.83430 0.88771 0.78434 1.90644 1.27604 1.86067 1.42959 1.46184 1.26686 1.06530 1.56545 1.18514 0.94835 0.78000 0.94230 1.21633 1.08860 0.91692 1.37224 0.89774 1.26074 0.98054 1.00242 0.95285 1.70135 1.30365 1.13706 1.42799 0.85160 0.78764 0.77268 0.78052 1.19600 1.20985 1.17871 1.24243 1.04265 0.95189 1.01892 1.87001 1.77765 1.07773 1.33797 0.91741 0.90208 0.92656 0.88917 0.90586 0.90783 0.91280 0.83407 0.86065 0.89897 0.75582 0.99521 0.99623 0.92247 0.88101 0.89592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 8.73 71.98 0.63 -1.10 16 2 C -0.05 -0.57 3.44 30.63 0.11 -0.47 16 3 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 4 C -0.11 -1.33 5.32 30.49 0.16 -1.16 16 5 C -0.12 -1.94 5.06 30.32 0.15 -1.79 16 6 C 0.10 1.76 2.32 44.81 0.10 1.87 16 7 H 0.09 1.66 7.71 -2.39 -0.02 1.64 16 8 N -0.68 -16.61 5.86 -496.15 -2.91 -19.52 16 9 C 0.06 1.40 5.96 85.56 0.51 1.91 16 10 C 0.49 19.22 7.87 87.66 0.69 19.91 16 11 O -0.59 -29.07 16.20 -3.04 -0.05 -29.12 16 12 N -0.71 -29.48 5.55 -466.79 -2.59 -32.07 16 13 C 0.27 14.69 5.43 85.63 0.46 15.15 16 14 C -0.56 -30.22 9.28 25.60 0.24 -29.99 16 15 H 0.08 4.11 7.60 -2.91 -0.02 4.09 16 16 C 0.00 0.17 5.46 84.66 0.46 0.63 16 17 N -0.93 -56.39 13.29 21.45 0.28 -56.10 16 18 Si 0.98 42.25 29.54 68.60 2.03 44.27 16 19 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 20 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 21 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 22 C -0.11 -1.83 5.33 72.01 0.38 -1.45 16 23 S -0.29 -5.09 21.75 -56.49 -1.23 -6.32 16 24 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.05 0.75 5.18 -2.39 -0.01 0.74 16 27 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.08 0.96 8.06 -2.39 -0.02 0.94 16 29 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.07 1.12 5.84 -2.39 -0.01 1.11 16 31 H 0.35 9.17 8.18 -89.69 -0.73 8.44 16 32 H 0.12 2.58 8.05 -2.38 -0.02 2.56 16 33 H 0.08 1.69 7.39 -2.39 -0.02 1.67 16 34 H 0.41 13.83 8.32 -92.70 -0.77 13.06 16 35 H -0.01 -0.81 8.14 -2.38 -0.02 -0.83 16 36 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 37 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 38 H 0.10 1.76 7.39 -2.39 -0.02 1.75 16 39 H 0.09 1.48 7.44 -2.39 -0.02 1.47 16 Total: -1.00 -70.69 324.15 -1.01 -71.70 By element: Atomic # 1 Polarization: 24.08 SS G_CDS: -0.45 Total: 23.63 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: 3.90 Total: 3.53 kcal Atomic # 7 Polarization: -102.47 SS G_CDS: -5.21 Total: -107.69 kcal Atomic # 8 Polarization: -29.07 SS G_CDS: -0.05 Total: -29.12 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.27 kcal Atomic # 16 Polarization: -5.09 SS G_CDS: -1.23 Total: -6.32 kcal Total: -70.69 -1.01 -71.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689527993.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.450 kcal (2) G-P(sol) polarization free energy of solvation -70.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds