Wall clock time and date at job start Mon Mar 30 2020 04:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.33247 * 125.52409 * 2 1 4 4 C 1.30831 * 109.82243 * 180.12913 * 3 2 1 5 5 C 1.50703 * 125.95798 * 179.86519 * 4 3 2 6 6 N 1.46494 * 109.46865 * 269.68772 * 5 4 3 7 7 C 1.38857 * 120.00003 * 179.97438 * 6 5 4 8 8 C 1.39562 * 119.84458 * 179.97438 * 7 6 5 9 9 C 1.36338 * 120.16376 * 180.25516 * 8 7 6 10 10 C 1.40886 * 119.83460 * 359.49783 * 9 8 7 11 11 C 1.41137 * 120.15606 * 180.25190 * 10 9 8 12 12 H 1.07995 * 119.99843 * 24.88071 * 11 10 9 13 13 C 1.39868 * 119.99750 * 204.88107 * 11 10 9 14 14 N 1.30905 * 120.00320 * 17.97818 * 13 11 10 15 15 Si 1.86807 * 119.99880 * 197.97722 * 13 11 10 16 16 H 1.48501 * 109.46869 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.46809 * 120.00160 * 15 13 11 18 18 H 1.48506 * 109.47039 * 240.00216 * 15 13 11 19 19 C 1.40884 * 119.68868 * 0.52410 * 10 9 8 20 20 C 1.36337 * 119.83583 * 359.72616 * 19 10 9 21 21 N 1.34430 * 108.07961 * 359.59517 * 4 3 2 22 22 C 1.46502 * 126.82132 * 180.27895 * 21 4 3 23 23 N 1.30708 * 125.52537 * 179.67150 * 2 1 3 24 24 H 1.09004 * 109.47201 * 270.29725 * 1 2 3 25 25 H 1.08993 * 109.47429 * 30.29997 * 1 2 3 26 26 H 1.09000 * 109.47143 * 150.30190 * 1 2 3 27 27 H 1.09000 * 109.47001 * 149.68747 * 5 4 3 28 28 H 1.09006 * 109.47036 * 29.68570 * 5 4 3 29 29 H 0.97006 * 120.00694 * 359.97438 * 6 5 4 30 30 H 1.08003 * 119.92372 * 359.97438 * 8 7 6 31 31 H 1.07999 * 120.08583 * 179.74687 * 9 8 7 32 32 H 0.96992 * 120.00260 * 179.97438 * 14 13 11 33 33 H 1.08002 * 120.08483 * 179.70992 * 19 10 9 34 34 H 1.08005 * 119.92181 * 179.97438 * 20 19 10 35 35 H 1.09001 * 109.47446 * 89.99973 * 22 21 4 36 36 H 1.08999 * 109.47011 * 210.00778 * 22 21 4 37 37 H 1.09008 * 109.47193 * 330.00175 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2812 1.0845 0.0000 4 6 3.5407 0.7304 -0.0028 5 6 4.7228 1.6653 -0.0066 6 7 5.1070 1.9609 -1.3890 7 6 6.1776 2.8069 -1.6462 8 6 6.5412 3.0859 -2.9645 9 6 7.5946 3.9115 -3.2245 10 6 8.3100 4.4918 -2.1585 11 6 9.3983 5.3516 -2.4200 12 1 9.4519 5.8850 -3.3575 13 6 10.4072 5.5129 -1.4649 14 7 10.5452 4.6349 -0.5038 15 14 11.5580 6.9813 -1.5607 16 1 11.1951 7.8190 -2.7320 17 1 11.4373 7.7866 -0.3189 18 1 12.9570 6.5051 -1.7079 19 6 7.9377 4.2052 -0.8303 20 6 6.8854 3.3738 -0.5852 21 7 3.5965 -0.6127 0.0044 22 6 4.8047 -1.4413 0.0101 23 7 2.2665 -1.0638 0.0061 24 1 -0.3634 0.0053 1.0277 25 1 -0.3634 0.8872 -0.5184 26 1 -0.3633 -0.8927 -0.5091 27 1 5.5593 1.1953 0.5105 28 1 4.4551 2.5914 0.5022 29 1 4.6135 1.5658 -2.1247 30 1 5.9896 2.6432 -3.7807 31 1 7.8774 4.1233 -4.2450 32 1 11.2451 4.7465 0.1584 33 1 8.4847 4.6429 -0.0083 34 1 6.5990 3.1528 0.4324 35 1 5.1033 -1.6414 1.0392 36 1 4.6016 -2.3834 -0.4991 37 1 5.6084 -0.9155 -0.5056 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689633661.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:12 Heat of formation + Delta-G solvation = 111.560521 kcal Electronic energy + Delta-G solvation = -19590.635231 eV Core-core repulsion = 16562.488887 eV Total energy + Delta-G solvation = -3028.146344 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.21501 -38.04550 -35.50142 -34.41344 -33.19903 -31.77968 -29.78143 -29.52209 -28.93979 -27.00985 -25.63768 -23.96888 -21.51377 -20.80097 -20.56364 -19.86653 -17.25860 -16.94620 -16.45729 -16.03643 -15.02993 -14.99187 -14.33403 -14.05459 -13.89779 -13.76974 -13.32953 -13.09377 -12.78297 -12.65895 -12.48082 -12.40733 -12.02232 -11.73944 -11.69723 -11.29466 -11.07349 -10.86204 -10.52084 -10.05588 -9.83277 -9.73797 -9.50457 -9.32063 -9.30976 -8.64157 -7.55476 -6.70320 -6.48809 -4.09147 1.43213 2.19042 2.75278 2.86018 3.04965 3.13596 3.18977 3.29580 3.86035 4.02550 4.29185 4.35758 4.61185 4.71610 4.96787 4.99626 5.25663 5.33259 5.38277 5.59188 5.64422 5.75322 5.82830 6.19924 6.22439 6.24583 6.37251 6.66168 6.79365 6.87972 7.14382 7.30187 7.45744 7.62761 7.75898 8.04370 8.10194 8.19704 8.39288 8.55709 8.72543 9.01354 9.08919 10.32223 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.041519 B = 0.003289 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.235069 B = 8510.886971 C = 8660.795757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.215 3.785 3 N -0.529 5.529 4 C 0.276 3.724 5 C 0.219 3.781 6 N -0.755 5.755 7 C 0.087 3.913 8 C -0.151 4.151 9 C -0.187 4.187 10 C 0.077 3.923 11 C -0.465 4.465 12 H 0.074 0.926 13 C 0.075 3.925 14 N -0.806 5.806 15 Si 0.902 3.098 16 H -0.262 1.262 17 H -0.274 1.274 18 H -0.277 1.277 19 C -0.125 4.125 20 C -0.161 4.161 21 N -0.373 5.373 22 C 0.093 3.907 23 N -0.323 5.323 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.387 0.613 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.276 0.724 33 H 0.120 0.880 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.697 -8.978 3.081 14.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.067 4.067 3 N -0.257 5.257 4 C -0.001 4.001 5 C 0.091 3.909 6 N -0.393 5.393 7 C -0.009 4.009 8 C -0.173 4.173 9 C -0.207 4.207 10 C 0.075 3.925 11 C -0.496 4.496 12 H 0.092 0.908 13 C -0.140 4.140 14 N -0.433 5.433 15 Si 0.727 3.273 16 H -0.186 1.186 17 H -0.199 1.199 18 H -0.203 1.203 19 C -0.145 4.145 20 C -0.183 4.183 21 N -0.163 5.163 22 C -0.049 4.049 23 N -0.152 5.152 24 H 0.100 0.900 25 H 0.105 0.895 26 H 0.098 0.902 27 H 0.089 0.911 28 H 0.104 0.896 29 H 0.219 0.781 30 H 0.104 0.896 31 H 0.111 0.889 32 H 0.087 0.913 33 H 0.137 0.863 34 H 0.107 0.893 35 H 0.099 0.901 36 H 0.110 0.890 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -10.816 -9.473 3.490 14.796 hybrid contribution 0.762 0.342 -0.196 0.858 sum -10.054 -9.131 3.294 13.976 Atomic orbital electron populations 1.20067 0.83931 1.03938 1.03594 1.24307 0.98289 0.85793 0.98275 1.70419 0.99839 1.30712 1.24770 1.24522 0.95194 0.83660 0.96716 1.19417 0.88514 0.95204 0.87782 1.43654 1.36408 1.55964 1.03290 1.17244 0.91715 0.98407 0.93525 1.19788 1.00660 1.03953 0.92944 1.20551 0.99958 1.02528 0.97686 1.17519 0.92334 0.91750 0.90943 1.19419 1.04396 1.23518 1.02286 0.90826 1.25805 0.97745 0.96038 0.94460 1.69851 1.29480 1.31258 1.12727 0.86362 0.79593 0.82061 0.79237 1.18595 1.19912 1.20267 1.20933 0.96020 0.99902 0.97658 1.20078 0.99553 1.03413 0.95248 1.50248 1.06114 1.05790 1.54195 1.22042 0.82785 0.96082 1.04027 1.77969 0.86820 1.22728 1.27718 0.89969 0.89537 0.90179 0.91087 0.89582 0.78059 0.89570 0.88938 0.91319 0.86268 0.89326 0.90062 0.88975 0.88205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.52 10.51 36.01 0.38 -0.15 16 2 C 0.22 3.02 8.14 -156.85 -1.28 1.74 16 3 N -0.53 -8.31 11.19 -8.16 -0.09 -8.41 16 4 C 0.28 4.04 7.35 -155.69 -1.14 2.90 16 5 C 0.22 3.21 5.01 -5.20 -0.03 3.19 16 6 N -0.75 -12.74 5.69 -59.67 -0.34 -13.08 16 7 C 0.09 1.81 6.67 -83.69 -0.56 1.25 16 8 C -0.15 -3.30 9.82 -39.77 -0.39 -3.69 16 9 C -0.19 -4.51 9.74 -39.26 -0.38 -4.89 16 10 C 0.08 2.04 5.57 -106.79 -0.60 1.44 16 11 C -0.47 -12.36 9.03 -37.87 -0.34 -12.71 16 12 H 0.07 1.90 7.91 -52.49 -0.41 1.49 16 13 C 0.07 1.89 5.13 -17.34 -0.09 1.80 16 14 N -0.81 -20.80 10.96 55.54 0.61 -20.19 16 15 Si 0.90 18.85 29.60 -169.99 -5.03 13.82 16 16 H -0.26 -5.45 7.11 56.52 0.40 -5.04 16 17 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 18 H -0.28 -5.71 7.11 56.52 0.40 -5.30 16 19 C -0.13 -3.16 8.64 -39.27 -0.34 -3.50 16 20 C -0.16 -3.57 9.23 -39.77 -0.37 -3.94 16 21 N -0.37 -5.00 4.04 -65.09 -0.26 -5.26 16 22 C 0.09 0.87 11.16 59.85 0.67 1.54 16 23 N -0.32 -4.67 12.70 32.42 0.41 -4.26 16 24 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.95 7.54 -51.93 -0.39 0.56 16 28 H 0.09 1.32 7.93 -51.93 -0.41 0.91 16 29 H 0.39 6.25 8.46 -40.82 -0.35 5.91 16 30 H 0.09 1.67 8.06 -52.48 -0.42 1.25 16 31 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 32 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 33 H 0.12 3.13 6.16 -52.49 -0.32 2.81 16 34 H 0.09 1.75 6.68 -52.48 -0.35 1.40 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.10 0.92 7.72 -51.92 -0.40 0.52 16 LS Contribution 319.01 15.07 4.81 4.81 Total: -1.00 -30.08 319.01 -9.09 -39.18 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -4.73 Total: 8.40 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: -4.46 Total: -15.01 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: 0.33 Total: -51.20 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.08 -9.09 -39.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689633661.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.738 kcal (2) G-P(sol) polarization free energy of solvation -30.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds