Wall clock time and date at job start Mon Mar 30 2020 04:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.33247 * 125.52409 * 2 1 4 4 C 1.30831 * 109.82243 * 180.12913 * 3 2 1 5 5 C 1.50703 * 125.95798 * 179.86519 * 4 3 2 6 6 N 1.46494 * 109.46865 * 269.68772 * 5 4 3 7 7 C 1.38857 * 120.00003 * 179.97438 * 6 5 4 8 8 C 1.39562 * 119.84458 * 179.97438 * 7 6 5 9 9 C 1.36338 * 120.16376 * 180.25516 * 8 7 6 10 10 C 1.40886 * 119.83460 * 359.49783 * 9 8 7 11 11 C 1.41137 * 120.15606 * 180.25190 * 10 9 8 12 12 H 1.07995 * 119.99843 * 24.88071 * 11 10 9 13 13 C 1.39868 * 119.99750 * 204.88107 * 11 10 9 14 14 N 1.30905 * 120.00320 * 17.97818 * 13 11 10 15 15 Si 1.86807 * 119.99880 * 197.97722 * 13 11 10 16 16 H 1.48501 * 109.46869 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.46809 * 120.00160 * 15 13 11 18 18 H 1.48506 * 109.47039 * 240.00216 * 15 13 11 19 19 C 1.40884 * 119.68868 * 0.52410 * 10 9 8 20 20 C 1.36337 * 119.83583 * 359.72616 * 19 10 9 21 21 N 1.34430 * 108.07961 * 359.59517 * 4 3 2 22 22 C 1.46502 * 126.82132 * 180.27895 * 21 4 3 23 23 N 1.30708 * 125.52537 * 179.67150 * 2 1 3 24 24 H 1.09004 * 109.47201 * 270.29725 * 1 2 3 25 25 H 1.08993 * 109.47429 * 30.29997 * 1 2 3 26 26 H 1.09000 * 109.47143 * 150.30190 * 1 2 3 27 27 H 1.09000 * 109.47001 * 149.68747 * 5 4 3 28 28 H 1.09006 * 109.47036 * 29.68570 * 5 4 3 29 29 H 0.97006 * 120.00694 * 359.97438 * 6 5 4 30 30 H 1.08003 * 119.92372 * 359.97438 * 8 7 6 31 31 H 1.07999 * 120.08583 * 179.74687 * 9 8 7 32 32 H 0.96992 * 120.00260 * 179.97438 * 14 13 11 33 33 H 1.08002 * 120.08483 * 179.70992 * 19 10 9 34 34 H 1.08005 * 119.92181 * 179.97438 * 20 19 10 35 35 H 1.09001 * 109.47446 * 89.99973 * 22 21 4 36 36 H 1.08999 * 109.47011 * 210.00778 * 22 21 4 37 37 H 1.09008 * 109.47193 * 330.00175 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2812 1.0845 0.0000 4 6 3.5407 0.7304 -0.0028 5 6 4.7228 1.6653 -0.0066 6 7 5.1070 1.9609 -1.3890 7 6 6.1776 2.8069 -1.6462 8 6 6.5412 3.0859 -2.9645 9 6 7.5946 3.9115 -3.2245 10 6 8.3100 4.4918 -2.1585 11 6 9.3983 5.3516 -2.4200 12 1 9.4519 5.8850 -3.3575 13 6 10.4072 5.5129 -1.4649 14 7 10.5452 4.6349 -0.5038 15 14 11.5580 6.9813 -1.5607 16 1 11.1951 7.8190 -2.7320 17 1 11.4373 7.7866 -0.3189 18 1 12.9570 6.5051 -1.7079 19 6 7.9377 4.2052 -0.8303 20 6 6.8854 3.3738 -0.5852 21 7 3.5965 -0.6127 0.0044 22 6 4.8047 -1.4413 0.0101 23 7 2.2665 -1.0638 0.0061 24 1 -0.3634 0.0053 1.0277 25 1 -0.3634 0.8872 -0.5184 26 1 -0.3633 -0.8927 -0.5091 27 1 5.5593 1.1953 0.5105 28 1 4.4551 2.5914 0.5022 29 1 4.6135 1.5658 -2.1247 30 1 5.9896 2.6432 -3.7807 31 1 7.8774 4.1233 -4.2450 32 1 11.2451 4.7465 0.1584 33 1 8.4847 4.6429 -0.0083 34 1 6.5990 3.1528 0.4324 35 1 5.1033 -1.6414 1.0392 36 1 4.6016 -2.3834 -0.4991 37 1 5.6084 -0.9155 -0.5056 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689633661.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:11 Heat of formation + Delta-G solvation = 94.248426 kcal Electronic energy + Delta-G solvation = -19591.385940 eV Core-core repulsion = 16562.488887 eV Total energy + Delta-G solvation = -3028.897053 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.26237 -39.77178 -37.00968 -35.52047 -34.83060 -33.00784 -31.34319 -30.88808 -30.29488 -28.34087 -26.73299 -25.63728 -23.15346 -22.13204 -21.80210 -21.30436 -19.14009 -18.22069 -17.63210 -17.25014 -16.76536 -16.40353 -15.66486 -15.40236 -15.14540 -14.64434 -14.52239 -14.46898 -14.26897 -13.96465 -13.70645 -13.53022 -13.31544 -13.17079 -13.08060 -12.73403 -12.69317 -12.57250 -12.26800 -11.56846 -11.19908 -11.14505 -11.08380 -10.87531 -10.44883 -10.36753 -9.38706 -8.54827 -8.21968 -6.00747 0.35999 1.10960 1.20207 1.25578 1.42668 1.55945 1.58880 1.68131 2.29068 2.74276 2.85382 3.02690 3.39296 3.63039 3.86947 4.18610 4.29669 4.36684 4.41973 4.50077 4.52404 4.60863 4.72459 4.86927 4.89224 5.04991 5.10683 5.22272 5.28222 5.44390 5.46215 5.64226 5.69377 5.79279 5.95164 6.20556 6.38481 6.62975 6.83308 6.98877 7.01641 7.10293 7.24190 8.48908 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.041519 B = 0.003289 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.235069 B = 8510.886971 C = 8660.795757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.205 3.795 3 N -0.556 5.556 4 C 0.268 3.732 5 C 0.222 3.778 6 N -0.744 5.744 7 C 0.112 3.888 8 C -0.159 4.159 9 C -0.197 4.197 10 C 0.039 3.961 11 C -0.504 4.504 12 H 0.066 0.934 13 C 0.034 3.966 14 N -0.837 5.837 15 Si 0.973 3.027 16 H -0.263 1.263 17 H -0.267 1.267 18 H -0.269 1.269 19 C -0.143 4.143 20 C -0.167 4.167 21 N -0.370 5.370 22 C 0.085 3.915 23 N -0.339 5.339 24 H 0.097 0.903 25 H 0.092 0.908 26 H 0.094 0.906 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.394 0.606 30 H 0.114 0.886 31 H 0.095 0.905 32 H 0.283 0.717 33 H 0.101 0.899 34 H 0.113 0.887 35 H 0.100 0.900 36 H 0.105 0.895 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.671 -9.947 3.431 15.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.076 4.076 3 N -0.285 5.285 4 C -0.009 4.009 5 C 0.095 3.905 6 N -0.381 5.381 7 C 0.014 3.986 8 C -0.181 4.181 9 C -0.217 4.217 10 C 0.036 3.964 11 C -0.536 4.536 12 H 0.084 0.916 13 C -0.178 4.178 14 N -0.465 5.465 15 Si 0.795 3.205 16 H -0.186 1.186 17 H -0.191 1.191 18 H -0.194 1.194 19 C -0.163 4.163 20 C -0.189 4.189 21 N -0.161 5.161 22 C -0.056 4.056 23 N -0.169 5.169 24 H 0.116 0.884 25 H 0.111 0.889 26 H 0.113 0.887 27 H 0.107 0.893 28 H 0.101 0.899 29 H 0.227 0.773 30 H 0.132 0.868 31 H 0.113 0.887 32 H 0.093 0.907 33 H 0.119 0.881 34 H 0.131 0.869 35 H 0.118 0.882 36 H 0.123 0.877 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -11.817 -10.485 3.843 16.259 hybrid contribution 0.894 0.476 -0.300 1.056 sum -10.924 -10.008 3.543 15.233 Atomic orbital electron populations 1.20251 0.81270 1.04968 1.04901 1.25081 0.99940 0.85127 0.97477 1.70403 1.00561 1.31941 1.25611 1.24333 0.94893 0.84207 0.97483 1.19446 0.89322 0.95445 0.86306 1.43603 1.35033 1.54673 1.04814 1.17270 0.91457 0.97036 0.92856 1.20051 1.00241 1.03475 0.94330 1.20728 1.00578 1.02886 0.97488 1.17832 0.93373 0.93131 0.92016 1.19615 1.05821 1.25132 1.02997 0.91580 1.26557 0.98979 0.98389 0.93885 1.69898 1.30478 1.32644 1.13490 0.85293 0.77554 0.78398 0.79217 1.18646 1.19140 1.19404 1.20875 0.97276 1.01318 0.96877 1.20258 0.98831 1.02810 0.96957 1.50480 1.06718 1.05714 1.53150 1.22346 0.81490 0.96187 1.05568 1.77938 0.87328 1.23279 1.28325 0.88427 0.88938 0.88684 0.89255 0.89897 0.77255 0.86843 0.88651 0.90697 0.88073 0.86902 0.88171 0.87666 0.87861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.91 10.51 71.24 0.75 -0.16 16 2 C 0.21 5.38 8.14 138.63 1.13 6.50 16 3 N -0.56 -16.53 11.19 -179.72 -2.01 -18.55 16 4 C 0.27 7.30 7.35 138.23 1.02 8.32 16 5 C 0.22 5.99 5.01 85.64 0.43 6.42 16 6 N -0.74 -23.27 5.69 -342.71 -1.95 -25.22 16 7 C 0.11 4.46 6.67 38.67 0.26 4.72 16 8 C -0.16 -6.70 9.82 22.15 0.22 -6.49 16 9 C -0.20 -9.56 9.74 22.47 0.22 -9.34 16 10 C 0.04 2.12 5.57 -21.27 -0.12 2.00 16 11 C -0.50 -27.76 9.03 23.38 0.21 -27.55 16 12 H 0.07 3.56 7.91 -2.91 -0.02 3.54 16 13 C 0.03 1.76 5.13 85.23 0.44 2.20 16 14 N -0.84 -44.21 10.96 21.82 0.24 -43.97 16 15 Si 0.97 39.33 29.60 68.60 2.03 41.36 16 16 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 17 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 18 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 19 C -0.14 -7.38 8.64 22.47 0.19 -7.19 16 20 C -0.17 -7.25 9.23 22.15 0.20 -7.04 16 21 N -0.37 -9.09 4.04 -359.85 -1.45 -10.54 16 22 C 0.08 1.38 11.16 127.77 1.43 2.80 16 23 N -0.34 -9.13 12.70 -51.33 -0.65 -9.78 16 24 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.09 2.14 7.54 -2.39 -0.02 2.12 16 28 H 0.08 2.36 7.93 -2.38 -0.02 2.34 16 29 H 0.39 11.64 8.46 -92.70 -0.78 10.86 16 30 H 0.11 4.12 8.06 -2.91 -0.02 4.09 16 31 H 0.10 4.43 8.06 -2.91 -0.02 4.41 16 32 H 0.28 13.53 8.30 -92.71 -0.77 12.76 16 33 H 0.10 5.50 6.16 -2.91 -0.02 5.48 16 34 H 0.11 4.26 6.68 -2.91 -0.02 4.24 16 35 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.10 1.62 7.72 -2.38 -0.02 1.60 16 Total: -1.00 -65.47 319.01 2.88 -62.59 By element: Atomic # 1 Polarization: 28.62 SS G_CDS: 0.31 Total: 28.93 kcal Atomic # 6 Polarization: -31.18 SS G_CDS: 6.37 Total: -24.81 kcal Atomic # 7 Polarization: -102.23 SS G_CDS: -5.83 Total: -108.06 kcal Atomic # 14 Polarization: 39.33 SS G_CDS: 2.03 Total: 41.36 kcal Total: -65.47 2.88 -62.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689633661.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.834 kcal (2) G-P(sol) polarization free energy of solvation -65.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds