Wall clock time and date at job start Mon Mar 30 2020 04:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36922 * 120.30554 * 2 1 4 4 C 1.40311 * 118.48920 * 180.02562 * 3 2 1 5 5 C 1.43205 * 120.48082 * 180.24969 * 4 3 2 6 6 N 4.79109 * 136.32946 * 0.15243 * 2 1 3 7 7 C 1.39623 * 119.03581 * 359.97438 * 4 3 2 8 8 N 1.31685 * 120.50551 * 359.97438 * 7 4 3 9 9 C 1.32589 * 121.64410 * 0.02562 * 8 7 4 10 10 N 1.38595 * 119.53252 * 180.02562 * 9 8 7 11 11 C 1.46901 * 110.99721 * 66.59041 * 10 9 8 12 12 C 1.53236 * 109.33665 * 172.74918 * 11 10 9 13 13 N 1.47084 * 108.52642 * 53.82684 * 12 11 10 14 14 C 1.36934 * 120.88128 * 128.83648 * 13 12 11 15 15 H 1.08001 * 119.99728 * 207.53200 * 14 13 12 16 16 C 1.38814 * 120.00079 * 27.52472 * 14 13 12 17 17 N 1.31614 * 119.99896 * 16.00663 * 16 14 13 18 18 Si 1.86803 * 119.99694 * 196.00636 * 16 14 13 19 19 H 1.48496 * 109.47180 * 60.00338 * 18 16 14 20 20 H 1.48506 * 109.46678 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47098 * 299.99889 * 18 16 14 22 22 C 1.47075 * 118.23502 * 308.81947 * 13 12 11 23 23 C 1.46898 * 110.99678 * 302.28929 * 10 9 8 24 24 H 1.09000 * 109.47532 * 264.63477 * 1 2 3 25 25 H 1.09010 * 109.47224 * 24.63536 * 1 2 3 26 26 H 1.09002 * 109.47107 * 144.63602 * 1 2 3 27 27 H 1.08003 * 120.75451 * 0.02562 * 3 2 1 28 28 H 1.07998 * 119.74390 * 179.97438 * 7 4 3 29 29 H 1.09005 * 109.49088 * 292.70364 * 11 10 9 30 30 H 1.08996 * 109.49237 * 52.78820 * 11 10 9 31 31 H 1.09001 * 109.63303 * 294.11771 * 12 11 10 32 32 H 1.09001 * 109.62920 * 173.53830 * 12 11 10 33 33 H 0.97001 * 119.99638 * 180.02562 * 17 16 14 34 34 H 1.09001 * 109.62699 * 291.46825 * 22 13 12 35 35 H 1.08998 * 109.62902 * 170.89241 * 22 13 12 36 36 H 1.09004 * 109.49454 * 307.20886 * 23 10 9 37 37 H 1.08999 * 109.49764 * 67.29580 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1821 0.0000 4 6 3.6004 1.1376 -0.0006 5 6 4.3655 2.3481 0.0048 6 7 4.9725 3.3083 0.0088 7 6 4.2390 -0.1040 -0.0005 8 7 3.5358 -1.2174 0.0005 9 6 2.2100 -1.2028 0.0010 10 7 1.5136 -2.4011 0.0027 11 6 1.7208 -3.1285 1.2620 12 6 0.7979 -4.3513 1.2993 13 7 1.0213 -5.1427 0.0798 14 6 1.2738 -6.4867 0.1506 15 1 1.8526 -6.9689 -0.6233 16 6 0.7860 -7.2294 1.2171 17 7 -0.1645 -6.7362 1.9823 18 14 1.4786 -8.9288 1.5661 19 1 2.9346 -8.8235 1.8385 20 1 0.7938 -9.5089 2.7493 21 1 1.2574 -9.8050 0.3878 22 6 0.9658 -4.4523 -1.2176 23 6 1.8821 -3.2255 -1.1559 24 1 -0.3634 -0.0961 1.0231 25 1 -0.3634 0.9342 -0.4284 26 1 -0.3633 -0.8381 -0.5948 27 1 1.6753 2.1273 0.0004 28 1 5.3179 -0.1515 -0.0014 29 1 2.7589 -3.4543 1.3273 30 1 1.4910 -2.4736 2.1024 31 1 -0.2413 -4.0248 1.3386 32 1 1.0277 -4.9569 2.1760 33 1 -0.5051 -7.2550 2.7278 34 1 -0.0573 -4.1354 -1.4203 35 1 1.3065 -5.1246 -2.0050 36 1 1.7692 -2.6410 -2.0690 37 1 2.9179 -3.5500 -1.0569 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690375604.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:00 Heat of formation + Delta-G solvation = 105.338601 kcal Electronic energy + Delta-G solvation = -20433.062781 eV Core-core repulsion = 17404.646634 eV Total energy + Delta-G solvation = -3028.416147 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.87327 -38.04537 -36.68238 -34.53140 -33.87662 -31.93620 -30.67117 -29.96145 -27.45739 -26.50228 -24.02058 -22.96981 -22.67134 -22.29675 -19.23229 -18.59534 -17.47066 -17.08585 -16.24033 -15.13918 -14.78405 -14.28004 -14.16224 -13.95333 -13.80187 -13.53483 -13.47646 -13.28823 -13.12560 -13.08092 -12.59728 -12.51101 -12.35331 -11.82782 -11.56345 -11.14173 -10.76153 -10.65303 -10.44164 -10.22731 -9.91413 -9.89187 -9.83124 -9.63520 -8.82815 -8.57144 -8.23764 -6.70967 -5.81445 -3.23630 0.38433 1.07330 2.40040 2.74075 3.37849 3.43666 3.45000 3.57887 3.65902 3.87195 4.33986 4.48222 4.53315 4.85005 4.92719 5.24682 5.35498 5.38780 5.46413 5.71709 5.75514 5.79403 5.83594 5.98577 6.06784 6.12803 6.19226 6.28300 6.41070 6.43637 6.57830 6.83729 7.10689 7.20423 7.45440 7.56036 7.59728 7.76471 7.78202 8.40371 9.17833 9.80426 10.38489 11.27695 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.035799 B = 0.004138 C = 0.003984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.948542 B = 6764.335898 C = 7027.061891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.109 4.109 3 C -0.029 4.029 4 C -0.100 4.100 5 C 0.266 3.734 6 N -0.422 5.422 7 C 0.159 3.841 8 N -0.504 5.504 9 C 0.338 3.662 10 N -0.485 5.485 11 C 0.042 3.958 12 C 0.180 3.820 13 N -0.594 5.594 14 C -0.253 4.253 15 H 0.066 0.934 16 C 0.003 3.997 17 N -0.904 5.904 18 Si 0.903 3.097 19 H -0.284 1.284 20 H -0.290 1.290 21 H -0.283 1.283 22 C 0.150 3.850 23 C 0.049 3.951 24 H 0.075 0.925 25 H 0.061 0.939 26 H 0.087 0.913 27 H 0.143 0.857 28 H 0.161 0.839 29 H 0.043 0.957 30 H 0.060 0.940 31 H 0.029 0.971 32 H 0.092 0.908 33 H 0.255 0.745 34 H 0.027 0.973 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.500 13.566 -3.547 14.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.113 4.113 3 C -0.057 4.057 4 C -0.106 4.106 5 C -0.050 4.050 6 N -0.098 5.098 7 C -0.003 4.003 8 N -0.215 5.215 9 C 0.109 3.891 10 N -0.209 5.209 11 C -0.085 4.085 12 C 0.054 3.946 13 N -0.317 5.317 14 C -0.383 4.383 15 H 0.084 0.916 16 C -0.195 4.195 17 N -0.548 5.548 18 Si 0.733 3.267 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.209 1.209 22 C 0.023 3.977 23 C -0.079 4.079 24 H 0.094 0.906 25 H 0.080 0.920 26 H 0.106 0.894 27 H 0.161 0.839 28 H 0.178 0.822 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.047 0.953 32 H 0.110 0.890 33 H 0.065 0.935 34 H 0.045 0.955 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.265 14.197 -3.432 14.966 hybrid contribution 0.611 -0.572 0.328 0.899 sum 3.876 13.625 -3.104 14.502 Atomic orbital electron populations 1.20638 0.88669 1.03000 1.03444 1.20329 0.98627 0.91280 1.01076 1.21190 0.91470 0.98992 0.94048 1.17012 0.92718 0.88823 1.12054 1.25437 0.93420 0.92710 0.93443 1.81257 1.08572 1.10570 1.09369 1.22743 1.00204 0.85529 0.91839 1.68117 1.09071 1.30712 1.13604 1.20448 0.86407 0.92898 0.89380 1.60237 1.51908 1.03016 1.05752 1.22991 1.00980 0.96842 0.87678 1.20886 0.94506 0.87782 0.91461 1.44084 1.83196 1.04953 0.99494 1.19144 1.26702 0.83658 1.08783 0.91640 1.25038 0.96501 0.97818 1.00169 1.69993 1.26690 1.38158 1.19993 0.86357 0.78669 0.84102 0.77551 1.21034 1.21619 1.20884 1.20992 0.95917 0.90978 0.89822 1.22689 0.99766 0.95094 0.90344 0.90639 0.92045 0.89384 0.83887 0.82168 0.93855 0.92122 0.95264 0.89003 0.93518 0.95484 0.92179 0.92084 0.93396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.00 9.70 36.01 0.35 -0.65 16 2 C -0.11 -1.25 5.88 -104.70 -0.62 -1.86 16 3 C -0.03 -0.28 9.48 -39.28 -0.37 -0.65 16 4 C -0.10 -1.02 5.75 -106.67 -0.61 -1.63 16 5 C 0.27 2.88 15.37 -22.47 -0.35 2.54 16 6 N -0.42 -5.42 18.54 41.84 0.78 -4.65 16 7 C 0.16 1.78 10.92 -17.10 -0.19 1.59 16 8 N -0.50 -7.20 9.74 -12.11 -0.12 -7.32 16 9 C 0.34 4.84 5.25 -155.19 -0.81 4.02 16 10 N -0.49 -8.03 3.62 -172.92 -0.63 -8.66 16 11 C 0.04 0.79 5.45 -3.70 -0.02 0.77 16 12 C 0.18 4.10 5.40 -3.60 -0.02 4.08 16 13 N -0.59 -14.39 3.03 -172.01 -0.52 -14.91 16 14 C -0.25 -6.77 9.63 -15.06 -0.14 -6.91 16 15 H 0.07 1.72 7.88 -52.49 -0.41 1.30 16 16 C 0.00 0.09 4.95 -17.43 -0.09 0.00 16 17 N -0.90 -25.44 11.16 55.49 0.62 -24.82 16 18 Si 0.90 21.25 29.58 -169.99 -5.03 16.22 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 C 0.15 3.00 6.69 -3.60 -0.02 2.98 16 23 C 0.05 0.85 5.34 -3.70 -0.02 0.83 16 24 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.06 0.46 8.05 -51.92 -0.42 0.04 16 26 H 0.09 1.02 7.64 -51.93 -0.40 0.63 16 27 H 0.14 0.98 8.06 -52.48 -0.42 0.55 16 28 H 0.16 1.41 8.06 -52.49 -0.42 0.99 16 29 H 0.04 0.87 8.12 -51.93 -0.42 0.45 16 30 H 0.06 1.03 8.09 -51.93 -0.42 0.61 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.09 2.35 6.16 -51.93 -0.32 2.03 16 33 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 34 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 1.17 7.95 -51.93 -0.41 0.75 16 36 H 0.06 0.92 8.09 -51.93 -0.42 0.50 16 37 H 0.05 0.89 7.99 -51.93 -0.42 0.48 16 LS Contribution 315.65 15.07 4.76 4.76 Total: -1.00 -29.51 315.65 -7.94 -37.45 By element: Atomic # 1 Polarization: 1.70 SS G_CDS: -4.89 Total: -3.19 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: -2.91 Total: 5.11 kcal Atomic # 7 Polarization: -60.48 SS G_CDS: 0.13 Total: -60.35 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.51 -7.94 -37.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690375604.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.789 kcal (2) G-P(sol) polarization free energy of solvation -29.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds