Wall clock time and date at job start Mon Mar 30 2020 04:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36922 * 120.30554 * 2 1 4 4 C 1.40311 * 118.48920 * 180.02562 * 3 2 1 5 5 C 1.43205 * 120.48082 * 180.24969 * 4 3 2 6 6 N 4.79109 * 136.32946 * 0.15243 * 2 1 3 7 7 C 1.39623 * 119.03581 * 359.97438 * 4 3 2 8 8 N 1.31685 * 120.50551 * 359.97438 * 7 4 3 9 9 C 1.32589 * 121.64410 * 0.02562 * 8 7 4 10 10 N 1.38595 * 119.53252 * 180.02562 * 9 8 7 11 11 C 1.46901 * 110.99721 * 66.59041 * 10 9 8 12 12 C 1.53236 * 109.33665 * 172.74918 * 11 10 9 13 13 N 1.47084 * 108.52642 * 53.82684 * 12 11 10 14 14 C 1.36934 * 120.88128 * 128.83648 * 13 12 11 15 15 H 1.08001 * 119.99728 * 207.53200 * 14 13 12 16 16 C 1.38814 * 120.00079 * 27.52472 * 14 13 12 17 17 N 1.31614 * 119.99896 * 16.00663 * 16 14 13 18 18 Si 1.86803 * 119.99694 * 196.00636 * 16 14 13 19 19 H 1.48496 * 109.47180 * 60.00338 * 18 16 14 20 20 H 1.48506 * 109.46678 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47098 * 299.99889 * 18 16 14 22 22 C 1.47075 * 118.23502 * 308.81947 * 13 12 11 23 23 C 1.46898 * 110.99678 * 302.28929 * 10 9 8 24 24 H 1.09000 * 109.47532 * 264.63477 * 1 2 3 25 25 H 1.09010 * 109.47224 * 24.63536 * 1 2 3 26 26 H 1.09002 * 109.47107 * 144.63602 * 1 2 3 27 27 H 1.08003 * 120.75451 * 0.02562 * 3 2 1 28 28 H 1.07998 * 119.74390 * 179.97438 * 7 4 3 29 29 H 1.09005 * 109.49088 * 292.70364 * 11 10 9 30 30 H 1.08996 * 109.49237 * 52.78820 * 11 10 9 31 31 H 1.09001 * 109.63303 * 294.11771 * 12 11 10 32 32 H 1.09001 * 109.62920 * 173.53830 * 12 11 10 33 33 H 0.97001 * 119.99638 * 180.02562 * 17 16 14 34 34 H 1.09001 * 109.62699 * 291.46825 * 22 13 12 35 35 H 1.08998 * 109.62902 * 170.89241 * 22 13 12 36 36 H 1.09004 * 109.49454 * 307.20886 * 23 10 9 37 37 H 1.08999 * 109.49764 * 67.29580 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1821 0.0000 4 6 3.6004 1.1376 -0.0006 5 6 4.3655 2.3481 0.0048 6 7 4.9725 3.3083 0.0088 7 6 4.2390 -0.1040 -0.0005 8 7 3.5358 -1.2174 0.0005 9 6 2.2100 -1.2028 0.0010 10 7 1.5136 -2.4011 0.0027 11 6 1.7208 -3.1285 1.2620 12 6 0.7979 -4.3513 1.2993 13 7 1.0213 -5.1427 0.0798 14 6 1.2738 -6.4867 0.1506 15 1 1.8526 -6.9689 -0.6233 16 6 0.7860 -7.2294 1.2171 17 7 -0.1645 -6.7362 1.9823 18 14 1.4786 -8.9288 1.5661 19 1 2.9346 -8.8235 1.8385 20 1 0.7938 -9.5089 2.7493 21 1 1.2574 -9.8050 0.3878 22 6 0.9658 -4.4523 -1.2176 23 6 1.8821 -3.2255 -1.1559 24 1 -0.3634 -0.0961 1.0231 25 1 -0.3634 0.9342 -0.4284 26 1 -0.3633 -0.8381 -0.5948 27 1 1.6753 2.1273 0.0004 28 1 5.3179 -0.1515 -0.0014 29 1 2.7589 -3.4543 1.3273 30 1 1.4910 -2.4736 2.1024 31 1 -0.2413 -4.0248 1.3386 32 1 1.0277 -4.9569 2.1760 33 1 -0.5051 -7.2550 2.7278 34 1 -0.0573 -4.1354 -1.4203 35 1 1.3065 -5.1246 -2.0050 36 1 1.7692 -2.6410 -2.0690 37 1 2.9179 -3.5500 -1.0569 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690375604.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:59 Heat of formation + Delta-G solvation = 88.375950 kcal Electronic energy + Delta-G solvation = -20433.798337 eV Core-core repulsion = 17404.646634 eV Total energy + Delta-G solvation = -3029.151703 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.88268 -39.40898 -37.72411 -36.12263 -34.76323 -33.53276 -32.05037 -31.58676 -28.69977 -27.76228 -25.53316 -24.30407 -23.86860 -23.68443 -20.87114 -19.47301 -19.01186 -18.08175 -17.78870 -16.75358 -16.22909 -15.59822 -15.37929 -15.26825 -15.16008 -14.88310 -14.74676 -14.47991 -14.25031 -13.98811 -13.90765 -13.45742 -13.40654 -13.20902 -13.01122 -12.64406 -12.59287 -12.41501 -12.13086 -11.97055 -11.68281 -11.55176 -10.79052 -10.75300 -10.56549 -9.78195 -9.59938 -8.66687 -7.85725 -5.30352 -0.54290 0.23452 1.49440 1.51590 1.52677 1.58146 1.82761 2.52472 2.59804 2.76088 2.78170 3.30578 3.42300 3.67380 3.74504 3.97979 4.01054 4.26354 4.33969 4.52032 4.55107 4.62001 4.66471 4.69139 4.84546 4.93032 4.97093 5.00146 5.15992 5.18290 5.32038 5.38941 5.59203 5.65027 5.69852 5.92336 6.31029 6.37166 6.39947 6.83116 7.16198 7.85790 8.39604 9.21270 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.035799 B = 0.004138 C = 0.003984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.948542 B = 6764.335898 C = 7027.061891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.105 4.105 3 C -0.011 4.011 4 C -0.086 4.086 5 C 0.290 3.710 6 N -0.452 5.452 7 C 0.158 3.842 8 N -0.532 5.532 9 C 0.308 3.692 10 N -0.482 5.482 11 C 0.063 3.937 12 C 0.190 3.810 13 N -0.613 5.613 14 C -0.265 4.265 15 H 0.066 0.934 16 C -0.047 4.047 17 N -0.933 5.933 18 Si 0.966 3.034 19 H -0.281 1.281 20 H -0.293 1.293 21 H -0.276 1.276 22 C 0.148 3.852 23 C 0.064 3.936 24 H 0.075 0.925 25 H 0.092 0.908 26 H 0.068 0.932 27 H 0.179 0.821 28 H 0.181 0.819 29 H 0.025 0.975 30 H 0.077 0.923 31 H 0.010 0.990 32 H 0.058 0.942 33 H 0.251 0.749 34 H 0.026 0.974 35 H 0.062 0.938 36 H 0.087 0.913 37 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.003 15.544 -4.236 16.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.109 4.109 3 C -0.039 4.039 4 C -0.092 4.092 5 C -0.026 4.026 6 N -0.128 5.128 7 C -0.005 4.005 8 N -0.243 5.243 9 C 0.080 3.920 10 N -0.205 5.205 11 C -0.065 4.065 12 C 0.064 3.936 13 N -0.337 5.337 14 C -0.395 4.395 15 H 0.084 0.916 16 C -0.242 4.242 17 N -0.578 5.578 18 Si 0.794 3.206 19 H -0.207 1.207 20 H -0.219 1.219 21 H -0.201 1.201 22 C 0.022 3.978 23 C -0.064 4.064 24 H 0.093 0.907 25 H 0.111 0.889 26 H 0.087 0.913 27 H 0.196 0.804 28 H 0.198 0.802 29 H 0.043 0.957 30 H 0.095 0.905 31 H 0.028 0.972 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.044 0.956 35 H 0.081 0.919 36 H 0.106 0.894 37 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 3.776 16.199 -4.148 17.143 hybrid contribution 0.482 -1.076 0.490 1.277 sum 4.258 15.123 -3.659 16.132 Atomic orbital electron populations 1.20657 0.87666 1.03900 1.03337 1.20422 0.99284 0.90685 1.00469 1.21514 0.91038 0.99659 0.91678 1.16975 0.93039 0.88069 1.11073 1.25293 0.92615 0.92184 0.92460 1.81305 1.09496 1.11638 1.10374 1.23029 1.01043 0.85111 0.91284 1.68002 1.09321 1.32358 1.14645 1.20397 0.86815 0.92432 0.92327 1.60090 1.52756 1.03426 1.04251 1.22560 0.98453 0.95675 0.89831 1.20601 0.94264 0.88753 0.90019 1.44348 1.83398 1.04711 1.01284 1.19461 1.26269 0.85006 1.08776 0.91646 1.25749 0.96982 1.01253 1.00261 1.70143 1.27956 1.39358 1.20385 0.85372 0.77843 0.80188 0.77207 1.20712 1.21924 1.20148 1.21111 0.96587 0.92023 0.88080 1.22440 0.97704 0.94345 0.91937 0.90686 0.88927 0.91266 0.80355 0.80219 0.95655 0.90485 0.97209 0.92350 0.94011 0.95566 0.91921 0.89428 0.95043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.69 9.70 71.24 0.69 -1.00 16 2 C -0.10 -2.09 5.88 -19.91 -0.12 -2.20 16 3 C -0.01 -0.17 9.48 22.47 0.21 0.05 16 4 C -0.09 -1.44 5.75 -21.19 -0.12 -1.56 16 5 C 0.29 5.37 15.37 88.33 1.36 6.72 16 6 N -0.45 -10.47 18.54 19.00 0.35 -10.11 16 7 C 0.16 3.13 10.92 85.05 0.93 4.06 16 8 N -0.53 -14.34 9.74 -192.24 -1.87 -16.22 16 9 C 0.31 8.31 5.25 133.19 0.70 9.01 16 10 N -0.48 -15.66 3.62 -700.99 -2.54 -18.20 16 11 C 0.06 2.38 5.45 86.38 0.47 2.85 16 12 C 0.19 8.98 5.40 86.35 0.47 9.45 16 13 N -0.61 -30.49 3.03 -698.12 -2.12 -32.60 16 14 C -0.27 -14.46 9.63 84.03 0.81 -13.65 16 15 H 0.07 3.48 7.88 -2.91 -0.02 3.46 16 16 C -0.05 -2.58 4.95 84.86 0.42 -2.16 16 17 N -0.93 -54.12 11.16 21.65 0.24 -53.88 16 18 Si 0.97 44.43 29.58 68.60 2.03 46.46 16 19 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 20 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 21 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 22 C 0.15 5.96 6.69 86.35 0.58 6.54 16 23 C 0.06 2.16 5.34 86.39 0.46 2.62 16 24 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.09 1.01 8.05 -2.38 -0.02 0.99 16 26 H 0.07 1.49 7.64 -2.39 -0.02 1.47 16 27 H 0.18 1.43 8.06 -2.91 -0.02 1.41 16 28 H 0.18 2.72 8.06 -2.91 -0.02 2.69 16 29 H 0.03 1.04 8.12 -2.38 -0.02 1.02 16 30 H 0.08 2.63 8.09 -2.39 -0.02 2.61 16 31 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.06 3.13 6.16 -2.39 -0.01 3.12 16 33 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 34 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.06 2.44 7.95 -2.39 -0.02 2.42 16 36 H 0.09 2.50 8.09 -2.38 -0.02 2.48 16 37 H 0.03 1.17 7.99 -2.39 -0.02 1.15 16 Total: -1.00 -65.20 315.65 4.02 -61.18 By element: Atomic # 1 Polarization: 1.59 SS G_CDS: 1.07 Total: 2.67 kcal Atomic # 6 Polarization: 13.85 SS G_CDS: 6.86 Total: 20.71 kcal Atomic # 7 Polarization: -125.08 SS G_CDS: -5.94 Total: -131.01 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -65.20 4.02 -61.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690375604.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.553 kcal (2) G-P(sol) polarization free energy of solvation -65.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds