Wall clock time and date at job start Mon Mar 30 2020 05:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 110.76125 * 2 1 4 4 C 1.55130 * 111.03350 * 236.37256 * 2 1 3 5 5 C 1.53855 * 106.90039 * 199.62745 * 4 2 1 6 6 H 1.08998 * 109.46376 * 287.42195 * 5 4 2 7 7 N 1.46505 * 109.61001 * 167.17735 * 5 4 2 8 8 C 1.34770 * 120.00284 * 154.04320 * 7 5 4 9 9 O 1.21286 * 119.99886 * 0.02562 * 8 7 5 10 10 C 1.50701 * 120.00293 * 179.97438 * 8 7 5 11 11 H 1.09002 * 109.47060 * 40.00174 * 10 8 7 12 12 N 1.46896 * 109.47239 * 160.00327 * 10 8 7 13 13 C 1.52997 * 109.47212 * 280.00118 * 10 8 7 14 14 C 1.52994 * 109.47404 * 174.99684 * 13 10 8 15 15 C 1.50698 * 109.47502 * 179.97438 * 14 13 10 16 16 H 1.08005 * 119.99844 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00426 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00640 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 120.00012 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47190 * 89.99630 * 19 17 15 21 21 H 1.48502 * 109.47178 * 210.00167 * 19 17 15 22 22 H 1.48498 * 109.46759 * 329.99747 * 19 17 15 23 23 C 1.54274 * 108.92615 * 47.25911 * 5 4 2 24 24 S 1.83088 * 104.65062 * 332.04417 * 23 5 4 25 25 H 1.09000 * 109.46934 * 297.96046 * 1 2 3 26 26 H 1.08994 * 109.47499 * 57.96582 * 1 2 3 27 27 H 1.09005 * 109.46809 * 177.96821 * 1 2 3 28 28 H 1.08998 * 109.97775 * 80.26702 * 4 2 1 29 29 H 1.09003 * 109.97689 * 318.98658 * 4 2 1 30 30 H 0.97004 * 120.00069 * 334.04246 * 7 5 4 31 31 H 1.00907 * 110.99811 * 296.04225 * 12 10 8 32 32 H 1.00900 * 111.00550 * 59.99964 * 12 10 8 33 33 H 1.09000 * 109.47325 * 294.99852 * 13 10 8 34 34 H 1.09008 * 109.47017 * 54.99761 * 13 10 8 35 35 H 1.09000 * 109.47476 * 300.00087 * 14 13 10 36 36 H 1.09008 * 109.46970 * 60.00049 * 14 13 10 37 37 H 0.96993 * 120.00296 * 179.97438 * 18 17 15 38 38 H 1.08996 * 110.40157 * 90.83837 * 23 5 4 39 39 H 1.09003 * 110.39582 * 213.25107 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9164 1.0192 0.0000 4 6 2.0868 -0.8019 -1.2056 5 6 3.5415 -1.1692 -0.8650 6 1 4.1653 -0.2775 -0.9270 7 7 4.0286 -2.1766 -1.8107 8 6 5.3477 -2.2780 -2.0673 9 8 6.1318 -1.5355 -1.5149 10 6 5.8488 -3.3146 -3.0396 11 1 5.1681 -3.3754 -3.8887 12 7 7.1877 -2.9368 -3.5113 13 6 5.9185 -4.6753 -2.3435 14 6 6.3071 -5.7495 -3.3612 15 6 6.3764 -7.0896 -2.6754 16 1 6.1641 -7.1674 -1.6193 17 6 6.7108 -8.2164 -3.3961 18 7 6.7708 -9.3861 -2.7978 19 14 7.0787 -8.0819 -5.2226 20 1 8.5289 -7.8292 -5.4181 21 1 6.7015 -9.3494 -5.8982 22 1 6.2981 -6.9601 -5.8033 23 6 3.5916 -1.7376 0.5683 24 16 2.1832 -0.9461 1.4298 25 1 -0.3633 0.4818 0.9077 26 1 -0.3634 0.5451 -0.8711 27 1 -0.3633 -1.0271 -0.0364 28 1 2.0588 -0.1881 -2.1059 29 1 1.4990 -1.7078 -1.3538 30 1 3.4016 -2.7707 -2.2522 31 1 7.1574 -2.0724 -4.0310 32 1 7.8377 -2.8738 -2.7422 33 1 6.6650 -4.6396 -1.5499 34 1 4.9449 -4.9150 -1.9159 35 1 5.5607 -5.7852 -4.1547 36 1 7.2808 -5.5098 -3.7887 37 1 7.0057 -10.1788 -3.3049 38 1 3.4673 -2.8203 0.5523 39 1 4.5315 -1.4692 1.0507 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691539026.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:34 Heat of formation + Delta-G solvation = -58.345481 kcal Electronic energy + Delta-G solvation = -18847.562605 eV Core-core repulsion = 15915.199784 eV Total energy + Delta-G solvation = -2932.362821 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.14227 -37.31218 -35.36708 -34.00637 -32.79531 -30.97744 -30.52498 -27.13379 -26.82823 -24.18371 -22.57069 -21.22087 -20.56030 -19.93408 -17.51566 -16.86978 -16.83302 -16.46385 -15.65951 -15.59392 -14.52328 -14.47321 -14.13973 -14.06158 -13.92858 -13.55264 -13.17557 -12.73661 -12.65262 -12.41708 -12.22018 -11.85416 -11.75225 -11.64118 -11.29491 -11.04817 -10.91251 -10.46789 -10.33515 -10.04640 -9.74912 -9.64171 -9.29175 -9.14283 -8.55727 -8.44704 -7.95677 -6.01334 -3.99316 1.45096 2.01106 2.58286 3.04680 3.35773 3.42367 3.47108 4.11720 4.22147 4.43296 4.49202 4.61762 4.64872 4.76027 4.87334 4.95379 5.15134 5.22610 5.30278 5.31446 5.35126 5.43164 5.57077 5.60791 5.62178 5.73693 6.18902 6.25328 6.42375 6.82856 7.15837 7.33906 7.38506 7.53208 7.60076 7.83757 8.10782 8.55601 9.03133 9.61413 11.12128 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.026562 B = 0.003673 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.895821 B = 7621.162520 C = 8007.019275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.041 4.041 3 H 0.100 0.900 4 C -0.134 4.134 5 C 0.139 3.861 6 H 0.098 0.902 7 N -0.723 5.723 8 C 0.486 3.514 9 O -0.548 6.548 10 C 0.076 3.924 11 H 0.099 0.901 12 N -0.811 5.811 13 C -0.087 4.087 14 C -0.004 4.004 15 C -0.522 4.522 16 H 0.069 0.931 17 C 0.066 3.934 18 N -0.906 5.906 19 Si 0.883 3.117 20 H -0.277 1.277 21 H -0.291 1.291 22 H -0.265 1.265 23 C -0.084 4.084 24 S -0.286 6.286 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.406 0.594 31 H 0.335 0.665 32 H 0.350 0.650 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.013 0.987 36 H 0.029 0.971 37 H 0.262 0.738 38 H 0.100 0.900 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.918 20.275 1.580 23.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.170 4.170 3 H 0.118 0.882 4 C -0.173 4.173 5 C 0.032 3.968 6 H 0.116 0.884 7 N -0.376 5.376 8 C 0.272 3.728 9 O -0.425 6.425 10 C -0.040 4.040 11 H 0.117 0.883 12 N -0.339 5.339 13 C -0.126 4.126 14 C -0.041 4.041 15 C -0.560 4.560 16 H 0.087 0.913 17 C -0.135 4.135 18 N -0.545 5.545 19 Si 0.711 3.289 20 H -0.203 1.203 21 H -0.217 1.217 22 H -0.189 1.189 23 C -0.233 4.233 24 S -0.060 6.060 25 H 0.083 0.917 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.241 0.759 31 H 0.147 0.853 32 H 0.165 0.835 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.031 0.969 36 H 0.048 0.952 37 H 0.072 0.928 38 H 0.119 0.881 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -11.658 19.847 2.658 23.170 hybrid contribution 0.216 0.553 -1.529 1.640 sum -11.442 20.400 1.129 23.417 Atomic orbital electron populations 1.21691 0.91489 1.03383 1.02555 1.23874 0.99409 1.00677 0.93050 0.88221 1.22880 0.94491 1.01436 0.98512 1.21728 0.95281 0.92711 0.87073 0.88376 1.46202 1.08571 1.37351 1.45456 1.22761 0.81782 0.85136 0.83162 1.90666 1.55205 1.44642 1.51975 1.21879 0.92016 0.94387 0.95717 0.88319 1.59025 1.06574 1.38800 1.29468 1.21476 1.01406 0.90432 0.99252 1.19480 0.97102 0.93253 0.94301 1.21172 1.47014 0.90474 0.97373 0.91315 1.25020 0.94836 0.95244 0.98428 1.69922 1.49309 0.98833 1.36437 0.86726 0.79175 0.77266 0.85763 1.20279 1.21698 1.18926 1.24503 0.98658 1.03609 0.96546 1.87725 1.36927 1.60058 1.21317 0.91666 0.91212 0.91239 0.89079 0.89332 0.75912 0.85290 0.83535 0.92193 0.92164 0.96899 0.95235 0.92809 0.88130 0.88120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.80 9.39 37.16 0.35 -0.45 16 2 C -0.04 -0.31 3.83 -25.60 -0.10 -0.41 16 3 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 4 C -0.13 -0.95 5.40 -25.16 -0.14 -1.09 16 5 C 0.14 1.37 2.89 -66.82 -0.19 1.18 16 6 H 0.10 1.10 7.55 -51.93 -0.39 0.71 16 7 N -0.72 -7.67 5.05 -52.73 -0.27 -7.94 16 8 C 0.49 6.73 7.05 -10.99 -0.08 6.65 16 9 O -0.55 -9.14 15.90 5.55 0.09 -9.05 16 10 C 0.08 1.12 3.15 -68.87 -0.22 0.90 16 11 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 12 N -0.81 -12.11 8.44 -5.66 -0.05 -12.16 16 13 C -0.09 -1.62 4.78 -26.74 -0.13 -1.75 16 14 C 0.00 -0.09 3.93 -27.89 -0.11 -0.20 16 15 C -0.52 -14.74 9.66 -34.44 -0.33 -15.07 16 16 H 0.07 2.09 7.99 -52.48 -0.42 1.67 16 17 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 18 N -0.91 -28.01 13.96 55.43 0.77 -27.24 16 19 Si 0.88 21.82 27.47 -169.99 -4.67 17.15 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.26 -6.23 6.54 56.52 0.37 -5.87 16 23 C -0.08 -0.93 6.99 37.82 0.26 -0.67 16 24 S -0.29 -3.05 22.73 -107.50 -2.44 -5.49 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.07 0.45 8.13 -51.93 -0.42 0.02 16 28 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.09 0.60 8.05 -51.93 -0.42 0.18 16 30 H 0.41 3.52 8.60 -40.82 -0.35 3.17 16 31 H 0.34 4.26 9.06 -39.29 -0.36 3.91 16 32 H 0.35 5.41 8.58 -39.29 -0.34 5.07 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.06 1.06 8.14 -51.92 -0.42 0.64 16 35 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 36 H 0.03 0.70 7.18 -51.92 -0.37 0.33 16 37 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 38 H 0.10 1.18 8.08 -51.93 -0.42 0.76 16 39 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 330.69 15.07 4.98 4.98 Total: -1.00 -32.70 330.69 -8.77 -41.47 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -6.41 Total: 7.37 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -0.78 Total: -9.09 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: 0.46 Total: -47.33 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.09 Total: -9.05 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Atomic # 16 Polarization: -3.05 SS G_CDS: -2.44 Total: -5.49 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.70 -8.77 -41.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691539026.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.880 kcal (2) G-P(sol) polarization free energy of solvation -32.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds