Wall clock time and date at job start Mon Mar 30 2020 05:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 110.76125 * 2 1 4 4 C 1.55130 * 111.03350 * 236.37256 * 2 1 3 5 5 C 1.53855 * 106.90039 * 199.62745 * 4 2 1 6 6 H 1.08998 * 109.46376 * 287.42195 * 5 4 2 7 7 N 1.46505 * 109.61001 * 167.17735 * 5 4 2 8 8 C 1.34770 * 120.00284 * 154.04320 * 7 5 4 9 9 O 1.21286 * 119.99886 * 0.02562 * 8 7 5 10 10 C 1.50701 * 120.00293 * 179.97438 * 8 7 5 11 11 H 1.09002 * 109.47060 * 40.00174 * 10 8 7 12 12 N 1.46896 * 109.47239 * 160.00327 * 10 8 7 13 13 C 1.52997 * 109.47212 * 280.00118 * 10 8 7 14 14 C 1.52994 * 109.47404 * 174.99684 * 13 10 8 15 15 C 1.50698 * 109.47502 * 179.97438 * 14 13 10 16 16 H 1.08005 * 119.99844 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00426 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00640 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 120.00012 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47190 * 89.99630 * 19 17 15 21 21 H 1.48502 * 109.47178 * 210.00167 * 19 17 15 22 22 H 1.48498 * 109.46759 * 329.99747 * 19 17 15 23 23 C 1.54274 * 108.92615 * 47.25911 * 5 4 2 24 24 S 1.83088 * 104.65062 * 332.04417 * 23 5 4 25 25 H 1.09000 * 109.46934 * 297.96046 * 1 2 3 26 26 H 1.08994 * 109.47499 * 57.96582 * 1 2 3 27 27 H 1.09005 * 109.46809 * 177.96821 * 1 2 3 28 28 H 1.08998 * 109.97775 * 80.26702 * 4 2 1 29 29 H 1.09003 * 109.97689 * 318.98658 * 4 2 1 30 30 H 0.97004 * 120.00069 * 334.04246 * 7 5 4 31 31 H 1.00907 * 110.99811 * 296.04225 * 12 10 8 32 32 H 1.00900 * 111.00550 * 59.99964 * 12 10 8 33 33 H 1.09000 * 109.47325 * 294.99852 * 13 10 8 34 34 H 1.09008 * 109.47017 * 54.99761 * 13 10 8 35 35 H 1.09000 * 109.47476 * 300.00087 * 14 13 10 36 36 H 1.09008 * 109.46970 * 60.00049 * 14 13 10 37 37 H 0.96993 * 120.00296 * 179.97438 * 18 17 15 38 38 H 1.08996 * 110.40157 * 90.83837 * 23 5 4 39 39 H 1.09003 * 110.39582 * 213.25107 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9164 1.0192 0.0000 4 6 2.0868 -0.8019 -1.2056 5 6 3.5415 -1.1692 -0.8650 6 1 4.1653 -0.2775 -0.9270 7 7 4.0286 -2.1766 -1.8107 8 6 5.3477 -2.2780 -2.0673 9 8 6.1318 -1.5355 -1.5149 10 6 5.8488 -3.3146 -3.0396 11 1 5.1681 -3.3754 -3.8887 12 7 7.1877 -2.9368 -3.5113 13 6 5.9185 -4.6753 -2.3435 14 6 6.3071 -5.7495 -3.3612 15 6 6.3764 -7.0896 -2.6754 16 1 6.1641 -7.1674 -1.6193 17 6 6.7108 -8.2164 -3.3961 18 7 6.7708 -9.3861 -2.7978 19 14 7.0787 -8.0819 -5.2226 20 1 8.5289 -7.8292 -5.4181 21 1 6.7015 -9.3494 -5.8982 22 1 6.2981 -6.9601 -5.8033 23 6 3.5916 -1.7376 0.5683 24 16 2.1832 -0.9461 1.4298 25 1 -0.3633 0.4818 0.9077 26 1 -0.3634 0.5451 -0.8711 27 1 -0.3633 -1.0271 -0.0364 28 1 2.0588 -0.1881 -2.1059 29 1 1.4990 -1.7078 -1.3538 30 1 3.4016 -2.7707 -2.2522 31 1 7.1574 -2.0724 -4.0310 32 1 7.8377 -2.8738 -2.7422 33 1 6.6650 -4.6396 -1.5499 34 1 4.9449 -4.9150 -1.9159 35 1 5.5607 -5.7852 -4.1547 36 1 7.2808 -5.5098 -3.7887 37 1 7.0057 -10.1788 -3.3049 38 1 3.4673 -2.8203 0.5523 39 1 4.5315 -1.4692 1.0507 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691539026.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:33 Heat of formation + Delta-G solvation = -82.484995 kcal Electronic energy + Delta-G solvation = -18848.609373 eV Core-core repulsion = 15915.199784 eV Total energy + Delta-G solvation = -2933.409589 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.22425 -38.18123 -36.77877 -34.81722 -34.75705 -32.28727 -31.80445 -28.43841 -27.76956 -25.60510 -23.53442 -22.13030 -21.96858 -21.15896 -19.00874 -18.35474 -17.76423 -17.47181 -16.88377 -16.54787 -16.20918 -15.55287 -15.37739 -14.98063 -14.95323 -14.68964 -14.55690 -13.97944 -13.89170 -13.53462 -13.38722 -12.97641 -12.81567 -12.57886 -12.42694 -12.24331 -12.00597 -11.92442 -11.79433 -11.60922 -11.29108 -11.17771 -11.07324 -10.70944 -10.23788 -9.67740 -8.81357 -8.24627 -6.28201 0.66915 1.22746 1.42285 1.43563 1.49819 1.56134 2.10817 2.41819 3.12147 3.41178 3.52982 3.57415 3.69943 3.83411 3.92209 4.04431 4.08158 4.26819 4.30054 4.45442 4.56085 4.70455 4.78414 4.81614 4.85051 4.88163 5.00084 5.14717 5.27419 5.29869 5.51047 5.65953 5.73391 6.06095 6.32596 6.38877 6.52182 6.80911 7.08277 7.36525 8.92351 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.026562 B = 0.003673 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.895821 B = 7621.162520 C = 8007.019275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.028 4.028 3 H 0.109 0.891 4 C -0.124 4.124 5 C 0.142 3.858 6 H 0.087 0.913 7 N -0.707 5.707 8 C 0.490 3.510 9 O -0.578 6.578 10 C 0.086 3.914 11 H 0.125 0.875 12 N -0.819 5.819 13 C -0.080 4.080 14 C 0.003 3.997 15 C -0.532 4.532 16 H 0.027 0.973 17 C 0.001 3.999 18 N -0.956 5.956 19 Si 0.955 3.045 20 H -0.273 1.273 21 H -0.288 1.288 22 H -0.239 1.239 23 C -0.079 4.079 24 S -0.329 6.329 25 H 0.061 0.939 26 H 0.094 0.906 27 H 0.065 0.935 28 H 0.116 0.884 29 H 0.097 0.903 30 H 0.418 0.582 31 H 0.350 0.650 32 H 0.345 0.655 33 H 0.037 0.963 34 H 0.066 0.934 35 H 0.026 0.974 36 H 0.027 0.973 37 H 0.265 0.735 38 H 0.091 0.909 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.399 22.214 -0.949 25.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.156 4.156 3 H 0.127 0.873 4 C -0.163 4.163 5 C 0.035 3.965 6 H 0.105 0.895 7 N -0.360 5.360 8 C 0.276 3.724 9 O -0.458 6.458 10 C -0.030 4.030 11 H 0.142 0.858 12 N -0.348 5.348 13 C -0.118 4.118 14 C -0.035 4.035 15 C -0.570 4.570 16 H 0.045 0.955 17 C -0.195 4.195 18 N -0.597 5.597 19 Si 0.779 3.221 20 H -0.198 1.198 21 H -0.214 1.214 22 H -0.162 1.162 23 C -0.229 4.229 24 S -0.104 6.104 25 H 0.080 0.920 26 H 0.112 0.888 27 H 0.084 0.916 28 H 0.134 0.866 29 H 0.116 0.884 30 H 0.256 0.744 31 H 0.163 0.837 32 H 0.159 0.841 33 H 0.056 0.944 34 H 0.085 0.915 35 H 0.044 0.956 36 H 0.045 0.955 37 H 0.073 0.927 38 H 0.109 0.891 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -13.186 21.810 0.125 25.486 hybrid contribution 0.641 -0.047 -0.614 0.889 sum -12.545 21.762 -0.489 25.124 Atomic orbital electron populations 1.21700 0.90058 1.03570 1.03504 1.24040 1.00340 1.00431 0.90824 0.87282 1.22854 0.92125 1.02232 0.99066 1.21786 0.97041 0.91717 0.85962 0.89489 1.46053 1.07752 1.37309 1.44851 1.22491 0.82550 0.84691 0.82716 1.90664 1.56248 1.45888 1.52973 1.21686 0.92755 0.92265 0.96306 0.85762 1.59014 1.06495 1.39864 1.29459 1.21262 1.00954 0.91730 0.97856 1.19368 0.97355 0.91645 0.95112 1.21581 1.46224 0.93285 0.95925 0.95510 1.26042 0.94725 0.94690 1.04064 1.70086 1.51005 0.99906 1.38739 0.85583 0.79329 0.78125 0.79085 1.19849 1.21388 1.16173 1.24375 0.97954 1.03069 0.97489 1.87885 1.37077 1.61022 1.24403 0.91982 0.88788 0.91563 0.86622 0.88405 0.74411 0.83680 0.84115 0.94378 0.91502 0.95552 0.95482 0.92670 0.89068 0.90098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.20 9.39 71.98 0.68 -0.52 16 2 C -0.03 -0.35 3.83 31.32 0.12 -0.23 16 3 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 4 C -0.12 -1.37 5.40 31.61 0.17 -1.20 16 5 C 0.14 2.56 2.89 45.71 0.13 2.69 16 6 H 0.09 1.84 7.55 -2.39 -0.02 1.82 16 7 N -0.71 -13.48 5.05 -439.12 -2.22 -15.70 16 8 C 0.49 12.77 7.05 87.66 0.62 13.39 16 9 O -0.58 -18.86 15.90 -3.05 -0.05 -18.91 16 10 C 0.09 2.34 3.15 44.17 0.14 2.48 16 11 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 12 N -0.82 -22.91 8.44 -171.81 -1.45 -24.36 16 13 C -0.08 -2.89 4.78 30.59 0.15 -2.74 16 14 C 0.00 0.12 3.93 29.85 0.12 0.24 16 15 C -0.53 -30.48 9.66 25.60 0.25 -30.23 16 16 H 0.03 1.70 7.99 -2.91 -0.02 1.67 16 17 C 0.00 0.05 5.47 84.65 0.46 0.51 16 18 N -0.96 -60.51 13.96 21.45 0.30 -60.21 16 19 Si 0.96 44.30 27.47 68.60 1.88 46.18 16 20 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 21 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 22 H -0.24 -9.99 6.54 99.48 0.65 -9.34 16 23 C -0.08 -1.77 6.99 72.41 0.51 -1.26 16 24 S -0.33 -6.88 22.73 -56.49 -1.28 -8.16 16 25 H 0.06 0.63 8.14 -2.39 -0.02 0.62 16 26 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.07 0.68 8.13 -2.38 -0.02 0.66 16 28 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.10 0.97 8.05 -2.39 -0.02 0.95 16 30 H 0.42 5.98 8.60 -92.71 -0.80 5.18 16 31 H 0.35 8.05 9.06 -89.69 -0.81 7.23 16 32 H 0.35 10.37 8.58 -89.69 -0.77 9.60 16 33 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 35 H 0.03 1.12 7.20 -2.39 -0.02 1.10 16 36 H 0.03 1.23 7.18 -2.38 -0.02 1.21 16 37 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 38 H 0.09 2.17 8.08 -2.39 -0.02 2.15 16 39 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -72.53 330.69 -0.85 -73.38 By element: Atomic # 1 Polarization: 26.02 SS G_CDS: -1.37 Total: 24.65 kcal Atomic # 6 Polarization: -20.21 SS G_CDS: 3.34 Total: -16.88 kcal Atomic # 7 Polarization: -96.90 SS G_CDS: -3.37 Total: -100.26 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.05 Total: -18.91 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.88 Total: 46.18 kcal Atomic # 16 Polarization: -6.88 SS G_CDS: -1.28 Total: -8.16 kcal Total: -72.53 -0.85 -73.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691539026.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.101 kcal (2) G-P(sol) polarization free energy of solvation -72.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds