Wall clock time and date at job start Mon Mar 30 2020 04:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 112.52336 * 2 1 4 4 S 1.81428 * 113.14810 * 230.20029 * 2 1 3 5 5 C 1.81423 * 73.13589 * 273.34035 * 4 2 1 6 6 C 1.53040 * 89.89247 * 331.39704 * 5 4 2 7 7 H 1.09002 * 113.15096 * 277.64331 * 6 5 4 8 8 N 1.46500 * 113.15414 * 148.18807 * 6 5 4 9 9 C 1.34774 * 119.99717 * 104.44999 * 8 6 5 10 10 O 1.21287 * 120.00368 * 0.02562 * 9 8 6 11 11 C 1.50702 * 120.00243 * 180.02562 * 9 8 6 12 12 H 1.08999 * 109.46969 * 320.00776 * 11 9 8 13 13 N 1.46894 * 109.47679 * 200.00351 * 11 9 8 14 14 C 1.53000 * 109.47051 * 79.99971 * 11 9 8 15 15 C 1.53000 * 109.47394 * 184.99993 * 14 11 9 16 16 C 1.50698 * 109.47345 * 180.02562 * 15 14 11 17 17 H 1.08000 * 119.99770 * 0.02562 * 16 15 14 18 18 C 1.37870 * 119.99938 * 180.02562 * 16 15 14 19 19 N 1.31521 * 120.00139 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 120.00367 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47158 * 89.99842 * 20 18 16 22 22 H 1.48501 * 109.47246 * 210.00079 * 20 18 16 23 23 H 1.48501 * 109.46829 * 330.00013 * 20 18 16 24 24 H 1.09004 * 109.46678 * 290.19728 * 1 2 3 25 25 H 1.09001 * 109.47336 * 50.19836 * 1 2 3 26 26 H 1.09003 * 109.46927 * 170.20316 * 1 2 3 27 27 H 1.08995 * 109.47336 * 189.80673 * 3 2 1 28 28 H 1.09009 * 109.46732 * 309.80570 * 3 2 1 29 29 H 1.09000 * 109.46858 * 69.79739 * 3 2 1 30 30 H 1.09005 * 113.14662 * 216.13569 * 5 4 2 31 31 H 1.09004 * 113.14635 * 86.65593 * 5 4 2 32 32 H 0.96992 * 120.00314 * 284.46056 * 8 6 5 33 33 H 1.00901 * 110.99937 * 300.00430 * 13 11 9 34 34 H 1.00899 * 111.00040 * 63.94952 * 13 11 9 35 35 H 1.09004 * 109.47433 * 305.00554 * 14 11 9 36 36 H 1.09008 * 109.47111 * 65.00508 * 14 11 9 37 37 H 1.09004 * 109.47289 * 300.00650 * 15 14 11 38 38 H 1.09008 * 109.46571 * 60.00184 * 15 14 11 39 39 H 0.96997 * 120.00435 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1161 1.4133 0.0000 4 16 2.2432 -1.0678 -1.2817 5 6 1.9433 -2.1152 0.1690 6 6 2.1317 -0.9008 1.0811 7 1 3.1785 -0.6796 1.2895 8 7 1.3188 -0.9629 2.2983 9 6 1.8946 -1.2671 3.4783 10 8 3.0858 -1.4889 3.5326 11 6 1.0585 -1.3316 4.7304 12 1 0.3306 -0.5202 4.7234 13 7 1.9277 -1.1996 5.9072 14 6 0.3255 -2.6735 4.7856 15 6 -0.6181 -2.6901 5.9899 16 6 -1.3395 -4.0121 6.0446 17 1 -1.1442 -4.7652 5.2956 18 6 -2.2489 -4.2600 7.0508 19 7 -2.8789 -5.4135 7.0983 20 14 -2.5873 -2.9570 8.3459 21 1 -3.7015 -2.0862 7.8926 22 1 -2.9613 -3.6146 9.6238 23 1 -1.3680 -2.1344 8.5508 24 1 -0.3633 0.3548 0.9645 25 1 -0.3634 0.6578 -0.7895 26 1 -0.3633 -1.0127 -0.1749 27 1 3.1906 1.3611 -0.1750 28 1 1.6475 2.0009 -0.7896 29 1 1.9274 1.8848 0.9645 30 1 2.7070 -2.8800 0.3106 31 1 0.9329 -2.5229 0.2017 32 1 0.3663 -0.7853 2.2550 33 1 2.6117 -1.9408 5.9364 34 1 2.3739 -0.2949 5.9275 35 1 -0.2507 -2.8108 3.8706 36 1 1.0519 -3.4805 4.8821 37 1 -0.0419 -2.5528 6.9049 38 1 -1.3445 -1.8830 5.8934 39 1 -3.5184 -5.5881 7.8064 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691575390.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:55 Heat of formation + Delta-G solvation = -30.620409 kcal Electronic energy + Delta-G solvation = -19186.900969 eV Core-core repulsion = 16255.740397 eV Total energy + Delta-G solvation = -2931.160572 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.33150 -38.19385 -35.37815 -33.36447 -32.79064 -30.71010 -30.52535 -28.03919 -26.89580 -24.23580 -22.98917 -20.91752 -20.38427 -19.99767 -17.49551 -16.88476 -16.55740 -16.08362 -15.66400 -15.24810 -14.93254 -14.41804 -14.23065 -14.12989 -13.86419 -13.49919 -12.83090 -12.70514 -12.63647 -12.49798 -12.42341 -12.01317 -11.69381 -11.68048 -11.08557 -11.01082 -10.90881 -10.58345 -10.37555 -9.96214 -9.82108 -9.61743 -9.32976 -9.13932 -8.54817 -8.45537 -8.10262 -6.01689 -3.99677 1.39359 1.56662 2.55698 3.05774 3.33844 3.42240 3.49656 3.89841 4.27156 4.41140 4.49273 4.51435 4.67636 4.84841 4.92434 5.14103 5.22427 5.30060 5.31261 5.34583 5.35804 5.38946 5.47568 5.60763 5.67560 5.80432 6.17329 6.24730 6.42005 6.82393 7.16191 7.31513 7.38734 7.55424 7.60866 7.83827 8.10444 8.55185 9.02763 9.61185 11.11749 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.026835 B = 0.003977 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.179884 B = 7037.987759 C = 7351.755095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.038 4.038 3 C -0.134 4.134 4 S -0.275 6.275 5 C -0.101 4.101 6 C 0.153 3.847 7 H 0.132 0.868 8 N -0.718 5.718 9 C 0.487 3.513 10 O -0.547 6.547 11 C 0.075 3.925 12 H 0.099 0.901 13 N -0.810 5.810 14 C -0.088 4.088 15 C -0.004 4.004 16 C -0.522 4.522 17 H 0.069 0.931 18 C 0.066 3.934 19 N -0.906 5.906 20 Si 0.879 3.121 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.260 1.260 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.101 0.899 31 H 0.110 0.890 32 H 0.406 0.594 33 H 0.350 0.650 34 H 0.335 0.665 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.034 0.966 38 H 0.008 0.992 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.195 14.188 -13.878 21.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.148 4.148 3 C -0.192 4.192 4 S -0.048 6.048 5 C -0.251 4.251 6 C 0.044 3.956 7 H 0.149 0.851 8 N -0.372 5.372 9 C 0.273 3.727 10 O -0.423 6.423 11 C -0.041 4.041 12 H 0.117 0.883 13 N -0.338 5.338 14 C -0.126 4.126 15 C -0.042 4.042 16 C -0.560 4.560 17 H 0.087 0.913 18 C -0.135 4.135 19 N -0.545 5.545 20 Si 0.706 3.294 21 H -0.205 1.205 22 H -0.216 1.216 23 H -0.184 1.184 24 H 0.091 0.909 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.120 0.880 31 H 0.129 0.871 32 H 0.243 0.757 33 H 0.165 0.835 34 H 0.147 0.853 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.052 0.948 38 H 0.027 0.973 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.780 13.797 -14.652 21.957 hybrid contribution -0.406 0.627 0.780 1.080 sum 8.375 14.424 -13.872 21.694 Atomic orbital electron populations 1.21912 0.90726 1.03796 1.03127 1.24059 0.99293 0.98963 0.92500 1.21831 1.01493 0.93013 1.02912 1.88988 1.81457 1.11385 1.22993 1.24972 1.06525 1.01765 0.91842 1.22546 0.97970 0.91595 0.83471 0.85073 1.46271 1.12348 1.71798 1.06770 1.22779 0.89422 0.74326 0.86196 1.90668 1.16077 1.48952 1.86624 1.21889 0.94844 1.02787 0.84547 0.88320 1.59024 1.28154 1.08177 1.38480 1.21481 0.98182 0.91714 1.01215 1.19488 0.93827 0.96905 0.93952 1.21169 1.22452 0.99908 1.12484 0.91326 1.25013 0.95529 0.95306 0.97623 1.69923 1.27723 1.23097 1.33782 0.86777 0.79163 0.82187 0.81234 1.20510 1.21601 1.18408 0.90851 0.90825 0.90905 0.91162 0.91650 0.91001 0.88041 0.87143 0.75736 0.83526 0.85269 0.92193 0.92135 0.94758 0.97345 0.92820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 8.22 37.16 0.31 -0.65 16 2 C -0.04 -0.31 1.31 -90.60 -0.12 -0.43 16 3 C -0.13 -0.99 9.13 37.16 0.34 -0.65 16 4 S -0.28 -2.87 23.92 -107.50 -2.57 -5.44 16 5 C -0.10 -1.02 7.39 37.18 0.27 -0.74 16 6 C 0.15 1.51 3.26 -67.89 -0.22 1.29 16 7 H 0.13 1.50 7.46 -51.93 -0.39 1.11 16 8 N -0.72 -7.41 5.24 -64.00 -0.34 -7.74 16 9 C 0.49 6.57 7.07 -10.99 -0.08 6.49 16 10 O -0.55 -8.94 15.86 5.55 0.09 -8.85 16 11 C 0.08 1.08 3.15 -68.87 -0.22 0.87 16 12 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 13 N -0.81 -11.89 8.44 -5.66 -0.05 -11.94 16 14 C -0.09 -1.59 4.78 -26.73 -0.13 -1.72 16 15 C 0.00 -0.10 3.93 -27.88 -0.11 -0.21 16 16 C -0.52 -14.55 9.66 -34.44 -0.33 -14.88 16 17 H 0.07 2.06 7.99 -52.49 -0.42 1.64 16 18 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 19 N -0.91 -27.80 13.96 55.43 0.77 -27.03 16 20 Si 0.88 21.52 27.47 -169.99 -4.67 16.85 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 24 H 0.07 0.43 6.82 -51.93 -0.35 0.08 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.53 6.82 -51.93 -0.35 0.18 16 27 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 28 H 0.06 0.44 8.14 -51.92 -0.42 0.01 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.11 1.04 7.12 -51.93 -0.37 0.67 16 32 H 0.41 3.45 6.57 -40.82 -0.27 3.18 16 33 H 0.35 5.31 8.58 -39.29 -0.34 4.98 16 34 H 0.34 4.18 9.06 -39.29 -0.36 3.82 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 37 H 0.03 0.81 6.81 -51.93 -0.35 0.46 16 38 H 0.01 0.18 7.57 -51.92 -0.39 -0.21 16 39 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 327.20 15.07 4.93 4.93 Total: -1.00 -32.21 327.20 -8.35 -40.57 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -6.14 Total: 7.47 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: -0.38 Total: -8.82 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: 0.39 Total: -46.71 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.09 Total: -8.85 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Atomic # 16 Polarization: -2.87 SS G_CDS: -2.57 Total: -5.44 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.21 -8.35 -40.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691575390.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.945 kcal (2) G-P(sol) polarization free energy of solvation -32.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds