Wall clock time and date at job start Mon Mar 30 2020 04:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 112.52336 * 2 1 4 4 S 1.81428 * 113.14810 * 230.20029 * 2 1 3 5 5 C 1.81423 * 73.13589 * 273.34035 * 4 2 1 6 6 C 1.53040 * 89.89247 * 331.39704 * 5 4 2 7 7 H 1.09002 * 113.15096 * 277.64331 * 6 5 4 8 8 N 1.46500 * 113.15414 * 148.18807 * 6 5 4 9 9 C 1.34774 * 119.99717 * 104.44999 * 8 6 5 10 10 O 1.21287 * 120.00368 * 0.02562 * 9 8 6 11 11 C 1.50702 * 120.00243 * 180.02562 * 9 8 6 12 12 H 1.08999 * 109.46969 * 320.00776 * 11 9 8 13 13 N 1.46894 * 109.47679 * 200.00351 * 11 9 8 14 14 C 1.53000 * 109.47051 * 79.99971 * 11 9 8 15 15 C 1.53000 * 109.47394 * 184.99993 * 14 11 9 16 16 C 1.50698 * 109.47345 * 180.02562 * 15 14 11 17 17 H 1.08000 * 119.99770 * 0.02562 * 16 15 14 18 18 C 1.37870 * 119.99938 * 180.02562 * 16 15 14 19 19 N 1.31521 * 120.00139 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 120.00367 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47158 * 89.99842 * 20 18 16 22 22 H 1.48501 * 109.47246 * 210.00079 * 20 18 16 23 23 H 1.48501 * 109.46829 * 330.00013 * 20 18 16 24 24 H 1.09004 * 109.46678 * 290.19728 * 1 2 3 25 25 H 1.09001 * 109.47336 * 50.19836 * 1 2 3 26 26 H 1.09003 * 109.46927 * 170.20316 * 1 2 3 27 27 H 1.08995 * 109.47336 * 189.80673 * 3 2 1 28 28 H 1.09009 * 109.46732 * 309.80570 * 3 2 1 29 29 H 1.09000 * 109.46858 * 69.79739 * 3 2 1 30 30 H 1.09005 * 113.14662 * 216.13569 * 5 4 2 31 31 H 1.09004 * 113.14635 * 86.65593 * 5 4 2 32 32 H 0.96992 * 120.00314 * 284.46056 * 8 6 5 33 33 H 1.00901 * 110.99937 * 300.00430 * 13 11 9 34 34 H 1.00899 * 111.00040 * 63.94952 * 13 11 9 35 35 H 1.09004 * 109.47433 * 305.00554 * 14 11 9 36 36 H 1.09008 * 109.47111 * 65.00508 * 14 11 9 37 37 H 1.09004 * 109.47289 * 300.00650 * 15 14 11 38 38 H 1.09008 * 109.46571 * 60.00184 * 15 14 11 39 39 H 0.96997 * 120.00435 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1161 1.4133 0.0000 4 16 2.2432 -1.0678 -1.2817 5 6 1.9433 -2.1152 0.1690 6 6 2.1317 -0.9008 1.0811 7 1 3.1785 -0.6796 1.2895 8 7 1.3188 -0.9629 2.2983 9 6 1.8946 -1.2671 3.4783 10 8 3.0858 -1.4889 3.5326 11 6 1.0585 -1.3316 4.7304 12 1 0.3306 -0.5202 4.7234 13 7 1.9277 -1.1996 5.9072 14 6 0.3255 -2.6735 4.7856 15 6 -0.6181 -2.6901 5.9899 16 6 -1.3395 -4.0121 6.0446 17 1 -1.1442 -4.7652 5.2956 18 6 -2.2489 -4.2600 7.0508 19 7 -2.8789 -5.4135 7.0983 20 14 -2.5873 -2.9570 8.3459 21 1 -3.7015 -2.0862 7.8926 22 1 -2.9613 -3.6146 9.6238 23 1 -1.3680 -2.1344 8.5508 24 1 -0.3633 0.3548 0.9645 25 1 -0.3634 0.6578 -0.7895 26 1 -0.3633 -1.0127 -0.1749 27 1 3.1906 1.3611 -0.1750 28 1 1.6475 2.0009 -0.7896 29 1 1.9274 1.8848 0.9645 30 1 2.7070 -2.8800 0.3106 31 1 0.9329 -2.5229 0.2017 32 1 0.3663 -0.7853 2.2550 33 1 2.6117 -1.9408 5.9364 34 1 2.3739 -0.2949 5.9275 35 1 -0.2507 -2.8108 3.8706 36 1 1.0519 -3.4805 4.8821 37 1 -0.0419 -2.5528 6.9049 38 1 -1.3445 -1.8830 5.8934 39 1 -3.5184 -5.5881 7.8064 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691575390.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:55 Heat of formation + Delta-G solvation = -54.325652 kcal Electronic energy + Delta-G solvation = -19187.928905 eV Core-core repulsion = 16255.740397 eV Total energy + Delta-G solvation = -2932.188508 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.34268 -39.09676 -36.77971 -34.76012 -34.25268 -32.25269 -31.47131 -28.61567 -28.41817 -25.65061 -23.95630 -22.31927 -21.36516 -21.22266 -18.99900 -18.34528 -17.61912 -17.05879 -16.68500 -16.32481 -16.13462 -15.70393 -15.40700 -15.23563 -14.85061 -14.68284 -14.50312 -13.99083 -13.53339 -13.41409 -13.36967 -13.12648 -12.79004 -12.72833 -12.50728 -12.32006 -11.97659 -11.75607 -11.71827 -11.56305 -11.33277 -11.22888 -11.04018 -10.67911 -10.26164 -9.63721 -8.93977 -8.22224 -6.25392 0.65936 0.74606 1.42324 1.46279 1.48122 1.59896 2.11465 2.44288 3.14168 3.14875 3.55098 3.57650 3.64350 3.83628 3.87214 4.09519 4.13389 4.30674 4.44613 4.59696 4.64978 4.74694 4.75061 4.78287 4.81083 4.88096 5.12657 5.18213 5.24166 5.28609 5.54395 5.69242 5.77846 6.09751 6.35444 6.40840 6.55356 6.83990 7.09991 7.39455 8.94657 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.026835 B = 0.003977 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.179884 B = 7037.987759 C = 7351.755095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.018 4.018 3 C -0.134 4.134 4 S -0.312 6.312 5 C -0.098 4.098 6 C 0.153 3.847 7 H 0.117 0.883 8 N -0.701 5.701 9 C 0.493 3.507 10 O -0.577 6.577 11 C 0.085 3.915 12 H 0.126 0.874 13 N -0.820 5.820 14 C -0.080 4.080 15 C 0.001 3.999 16 C -0.530 4.530 17 H 0.028 0.972 18 C 0.002 3.998 19 N -0.957 5.957 20 Si 0.951 3.049 21 H -0.264 1.264 22 H -0.292 1.292 23 H -0.243 1.243 24 H 0.091 0.909 25 H 0.082 0.918 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.119 0.881 32 H 0.418 0.582 33 H 0.345 0.655 34 H 0.349 0.651 35 H 0.069 0.931 36 H 0.039 0.961 37 H 0.028 0.972 38 H 0.025 0.975 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.705 17.001 -13.727 23.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.128 4.128 3 C -0.192 4.192 4 S -0.085 6.085 5 C -0.247 4.247 6 C 0.044 3.956 7 H 0.135 0.865 8 N -0.355 5.355 9 C 0.278 3.722 10 O -0.456 6.456 11 C -0.031 4.031 12 H 0.143 0.857 13 N -0.349 5.349 14 C -0.119 4.119 15 C -0.036 4.036 16 C -0.568 4.568 17 H 0.046 0.954 18 C -0.194 4.194 19 N -0.598 5.598 20 Si 0.775 3.225 21 H -0.188 1.188 22 H -0.219 1.219 23 H -0.166 1.166 24 H 0.109 0.891 25 H 0.101 0.899 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.110 0.890 31 H 0.137 0.863 32 H 0.257 0.743 33 H 0.159 0.841 34 H 0.163 0.837 35 H 0.087 0.913 36 H 0.057 0.943 37 H 0.047 0.953 38 H 0.043 0.957 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.280 16.642 -14.541 23.600 hybrid contribution -0.236 -0.327 0.655 0.769 sum 8.044 16.315 -13.886 22.885 Atomic orbital electron populations 1.21977 0.89262 1.04044 1.04486 1.24049 1.00162 0.98723 0.89909 1.21851 1.01108 0.92358 1.03901 1.89162 1.82155 1.13121 1.24048 1.24964 1.06674 1.01550 0.91549 1.22509 0.97420 0.92233 0.83427 0.86471 1.46097 1.12935 1.70441 1.05994 1.22513 0.88784 0.74215 0.86672 1.90669 1.17371 1.50501 1.87033 1.21710 0.95169 1.01151 0.85071 0.85678 1.59019 1.28318 1.08930 1.38610 1.21275 0.97308 0.93551 0.99727 1.19381 0.94331 0.94239 0.95650 1.21583 1.22619 1.01359 1.11244 0.95380 1.26015 0.95420 0.97672 1.00311 1.70088 1.28979 1.25662 1.35075 0.85636 0.79910 0.79282 0.77687 1.18844 1.21854 1.16645 0.89095 0.89887 0.91203 0.91885 0.90621 0.89880 0.89011 0.86311 0.74290 0.84095 0.83698 0.91250 0.94259 0.95339 0.95710 0.92747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 8.22 71.98 0.59 -0.94 16 2 C -0.02 -0.27 1.31 -10.78 -0.01 -0.28 16 3 C -0.13 -1.66 9.13 71.98 0.66 -1.01 16 4 S -0.31 -6.26 23.92 -56.49 -1.35 -7.61 16 5 C -0.10 -1.89 7.39 72.00 0.53 -1.36 16 6 C 0.15 2.79 3.26 45.02 0.15 2.94 16 7 H 0.12 2.58 7.46 -2.39 -0.02 2.56 16 8 N -0.70 -12.76 5.24 -474.79 -2.49 -15.25 16 9 C 0.49 12.30 7.07 87.66 0.62 12.92 16 10 O -0.58 -18.22 15.86 -3.05 -0.05 -18.27 16 11 C 0.08 2.22 3.15 44.17 0.14 2.36 16 12 H 0.13 2.66 8.14 -2.39 -0.02 2.64 16 13 N -0.82 -22.28 8.44 -171.81 -1.45 -23.73 16 14 C -0.08 -2.80 4.78 30.59 0.15 -2.65 16 15 C 0.00 0.06 3.93 29.85 0.12 0.18 16 16 C -0.53 -29.77 9.66 25.60 0.25 -29.52 16 17 H 0.03 1.74 7.99 -2.91 -0.02 1.72 16 18 C 0.00 0.10 5.47 84.65 0.46 0.57 16 19 N -0.96 -59.87 13.96 21.45 0.30 -59.57 16 20 Si 0.95 43.60 27.47 68.60 1.88 45.49 16 21 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 22 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 23 H -0.24 -10.41 6.54 99.48 0.65 -9.76 16 24 H 0.09 0.71 6.82 -2.39 -0.02 0.70 16 25 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.07 0.84 6.82 -2.39 -0.02 0.83 16 27 H 0.06 0.89 8.10 -2.39 -0.02 0.87 16 28 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 29 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 31 H 0.12 2.09 7.12 -2.38 -0.02 2.07 16 32 H 0.42 5.67 6.57 -92.71 -0.61 5.06 16 33 H 0.35 10.08 8.58 -89.69 -0.77 9.31 16 34 H 0.35 7.81 9.06 -89.69 -0.81 6.99 16 35 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 37 H 0.03 1.28 6.81 -2.39 -0.02 1.27 16 38 H 0.02 1.01 7.57 -2.38 -0.02 0.99 16 39 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -70.38 327.20 -0.68 -71.07 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: -1.18 Total: 24.66 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: 3.65 Total: -16.79 kcal Atomic # 7 Polarization: -94.91 SS G_CDS: -3.64 Total: -98.55 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: -0.05 Total: -18.27 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 1.88 Total: 45.49 kcal Atomic # 16 Polarization: -6.26 SS G_CDS: -1.35 Total: -7.61 kcal Total: -70.38 -0.68 -71.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691575390.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.742 kcal (2) G-P(sol) polarization free energy of solvation -70.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds