Wall clock time and date at job start Mon Mar 30 2020 04:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 112.49562 * 2 1 4 4 S 1.81421 * 113.14768 * 230.16570 * 2 1 3 5 5 C 1.81561 * 73.14171 * 216.14606 * 4 2 1 6 6 C 1.53049 * 89.83757 * 28.60090 * 5 4 2 7 7 H 1.08997 * 113.15024 * 211.83527 * 6 5 4 8 8 N 1.46494 * 113.15083 * 82.38148 * 6 5 4 9 9 C 1.34781 * 119.99886 * 104.45612 * 8 6 5 10 10 O 1.21283 * 119.99784 * 359.97438 * 9 8 6 11 11 C 1.50695 * 120.00012 * 179.97438 * 9 8 6 12 12 H 1.08997 * 109.47405 * 39.99893 * 11 9 8 13 13 N 1.46902 * 109.47310 * 159.99689 * 11 9 8 14 14 C 1.52997 * 109.47535 * 279.99630 * 11 9 8 15 15 C 1.53002 * 109.47535 * 174.99737 * 14 11 9 16 16 C 1.50696 * 109.46997 * 179.97438 * 15 14 11 17 17 H 1.07999 * 120.00319 * 0.02562 * 16 15 14 18 18 C 1.37885 * 119.99717 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99913 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 119.99766 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 H 1.09004 * 109.46962 * 290.23179 * 1 2 3 25 25 H 1.08996 * 109.47034 * 50.22789 * 1 2 3 26 26 H 1.08999 * 109.46988 * 170.23110 * 1 2 3 27 27 H 1.09001 * 109.47292 * 189.77744 * 3 2 1 28 28 H 1.09002 * 109.46700 * 309.77468 * 3 2 1 29 29 H 1.08994 * 109.47509 * 69.76933 * 3 2 1 30 30 H 1.08991 * 113.14388 * 273.36749 * 5 4 2 31 31 H 1.09000 * 113.19008 * 143.84405 * 5 4 2 32 32 H 0.97003 * 120.00369 * 284.44958 * 8 6 5 33 33 H 1.00900 * 111.00079 * 296.05153 * 13 11 9 34 34 H 1.00904 * 110.99762 * 59.99982 * 13 11 9 35 35 H 1.09005 * 109.46889 * 55.00061 * 14 11 9 36 36 H 1.09002 * 109.47401 * 295.00150 * 14 11 9 37 37 H 1.09005 * 109.46767 * 60.00250 * 15 14 11 38 38 H 1.09002 * 109.47113 * 300.00590 * 15 14 11 39 39 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1155 1.4136 0.0000 4 16 2.2432 -1.0686 -1.2810 5 6 3.3264 -1.1921 0.1709 6 6 2.1316 -0.9003 1.0817 7 1 2.4052 -0.3583 1.9870 8 7 1.3182 -2.0859 1.3623 9 6 1.4027 -2.6924 2.5630 10 8 2.1526 -2.2568 3.4109 11 6 0.5655 -3.9116 2.8519 12 1 0.5381 -4.5509 1.9695 13 7 1.1523 -4.6534 3.9759 14 6 -0.8570 -3.4796 3.2132 15 6 -1.7383 -4.7186 3.3845 16 6 -3.1393 -4.2930 3.7410 17 1 -3.3775 -3.2438 3.8354 18 6 -4.1171 -5.2432 3.9466 19 7 -5.3399 -4.8718 4.2572 20 14 -3.7049 -7.0578 3.7839 21 1 -3.9270 -7.4921 2.3813 22 1 -2.2828 -7.2773 4.1509 23 1 -4.5775 -7.8467 4.6904 24 1 -0.3633 0.3554 0.9643 25 1 -0.3633 0.6574 -0.7898 26 1 -0.3633 -1.0128 -0.1744 27 1 3.1902 1.3618 -0.1745 28 1 1.6470 2.0007 -0.7899 29 1 1.9262 1.8852 0.9642 30 1 4.0898 -0.4149 0.2032 31 1 3.7404 -2.1903 0.3138 32 1 0.7186 -2.4344 0.6841 33 1 2.0677 -5.0052 3.7385 34 1 1.1889 -4.0818 4.8066 35 1 -1.2602 -2.8544 2.4165 36 1 -0.8396 -2.9145 4.1450 37 1 -1.3351 -5.3438 4.1812 38 1 -1.7558 -5.2838 2.4527 39 1 -6.0279 -5.5402 4.4014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691575404.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:59 Heat of formation + Delta-G solvation = -28.523816 kcal Electronic energy + Delta-G solvation = -19241.403926 eV Core-core repulsion = 16310.334270 eV Total energy + Delta-G solvation = -2931.069657 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.30522 -38.15097 -35.35088 -33.44864 -32.76812 -30.70424 -30.49007 -27.84921 -26.71274 -24.21701 -22.86444 -20.98092 -20.54916 -19.89923 -17.33309 -17.03397 -16.62569 -15.96718 -15.66791 -15.00279 -14.77298 -14.54132 -14.16404 -13.91444 -13.61922 -13.57069 -13.35130 -12.71710 -12.61459 -12.55319 -12.41213 -11.89433 -11.71914 -11.64865 -11.05548 -10.94513 -10.88244 -10.47053 -10.12890 -9.93794 -9.79929 -9.59701 -9.30517 -9.11607 -8.52937 -8.43393 -8.08798 -5.99826 -3.97478 1.43151 1.59000 2.56943 2.96731 3.36231 3.44112 3.51911 3.92494 4.37676 4.48478 4.51464 4.55109 4.70015 4.88695 4.91482 5.14097 5.25347 5.31585 5.33849 5.36845 5.38254 5.45546 5.51769 5.64371 5.70621 5.90977 6.23570 6.29433 6.44779 6.85360 7.19849 7.34983 7.43779 7.58074 7.63246 7.86013 8.13838 8.57281 9.04724 9.63304 11.13629 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.025028 B = 0.004246 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.475356 B = 6592.456162 C = 7032.671320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.033 4.033 3 C -0.128 4.128 4 S -0.290 6.290 5 C -0.098 4.098 6 C 0.147 3.853 7 H 0.121 0.879 8 N -0.706 5.706 9 C 0.489 3.511 10 O -0.549 6.549 11 C 0.076 3.924 12 H 0.099 0.901 13 N -0.810 5.810 14 C -0.087 4.087 15 C -0.005 4.005 16 C -0.521 4.521 17 H 0.069 0.931 18 C 0.066 3.934 19 N -0.906 5.906 20 Si 0.879 3.121 21 H -0.279 1.279 22 H -0.260 1.260 23 H -0.290 1.290 24 H 0.076 0.924 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.111 0.889 31 H 0.098 0.902 32 H 0.410 0.590 33 H 0.335 0.665 34 H 0.350 0.650 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.034 0.966 38 H 0.009 0.991 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.351 9.688 -9.480 22.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.144 4.144 3 C -0.187 4.187 4 S -0.063 6.063 5 C -0.247 4.247 6 C 0.038 3.962 7 H 0.139 0.861 8 N -0.359 5.359 9 C 0.275 3.725 10 O -0.426 6.426 11 C -0.040 4.040 12 H 0.117 0.883 13 N -0.338 5.338 14 C -0.125 4.125 15 C -0.042 4.042 16 C -0.559 4.559 17 H 0.087 0.913 18 C -0.135 4.135 19 N -0.546 5.546 20 Si 0.706 3.294 21 H -0.205 1.205 22 H -0.184 1.184 23 H -0.216 1.216 24 H 0.095 0.905 25 H 0.085 0.915 26 H 0.090 0.910 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.129 0.871 31 H 0.117 0.883 32 H 0.248 0.752 33 H 0.147 0.853 34 H 0.164 0.836 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.052 0.948 38 H 0.027 0.973 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 16.900 8.905 -10.253 21.680 hybrid contribution 0.776 0.054 0.369 0.861 sum 17.675 8.958 -9.884 22.144 Atomic orbital electron populations 1.21815 0.90808 1.03508 1.03361 1.24020 1.00458 0.97791 0.92136 1.21853 1.01213 0.92310 1.03317 1.89085 1.33712 1.58909 1.24637 1.24897 1.00605 1.06726 0.92515 1.21522 0.89029 0.87080 0.98606 0.86107 1.45941 1.44391 1.28872 1.16674 1.22762 0.82614 0.86352 0.80795 1.90656 1.40073 1.65930 1.45983 1.21878 0.95908 0.89970 0.96248 0.88264 1.59031 1.28453 1.40725 1.05575 1.21475 0.89347 1.00646 1.01060 1.19491 0.94607 0.93142 0.96973 1.21170 0.92390 0.95113 1.47258 0.91315 1.25011 0.94838 0.99047 0.94565 1.69924 1.01988 1.34017 1.48638 0.86781 0.79153 0.85457 0.78000 1.20499 1.18406 1.21616 0.90515 0.91546 0.91049 0.91390 0.90998 0.90752 0.87081 0.88322 0.75224 0.85290 0.83564 0.92160 0.92144 0.94767 0.97318 0.92841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 8.63 37.16 0.32 -0.92 16 2 C -0.03 -0.29 1.29 -90.59 -0.12 -0.41 16 3 C -0.13 -0.87 8.99 37.16 0.33 -0.53 16 4 S -0.29 -2.99 23.44 -107.50 -2.52 -5.51 16 5 C -0.10 -0.87 7.41 37.18 0.28 -0.59 16 6 C 0.15 1.44 3.46 -67.88 -0.23 1.21 16 7 H 0.12 1.27 7.46 -51.93 -0.39 0.88 16 8 N -0.71 -7.98 4.61 -64.00 -0.30 -8.28 16 9 C 0.49 6.83 7.07 -10.99 -0.08 6.75 16 10 O -0.55 -9.00 15.86 5.55 0.09 -8.91 16 11 C 0.08 1.14 3.15 -68.87 -0.22 0.92 16 12 H 0.10 1.38 8.14 -51.93 -0.42 0.95 16 13 N -0.81 -12.20 8.44 -5.66 -0.05 -12.25 16 14 C -0.09 -1.61 4.78 -26.73 -0.13 -1.74 16 15 C 0.00 -0.11 3.93 -27.88 -0.11 -0.22 16 16 C -0.52 -14.67 9.66 -34.44 -0.33 -15.00 16 17 H 0.07 2.08 7.99 -52.49 -0.42 1.66 16 18 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 19 N -0.91 -28.00 13.96 55.43 0.77 -27.23 16 20 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.70 6.81 -51.93 -0.35 0.35 16 27 H 0.07 0.42 6.83 -51.93 -0.35 0.06 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.11 0.79 7.12 -51.93 -0.37 0.42 16 31 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.41 4.37 7.07 -40.82 -0.29 4.08 16 33 H 0.34 4.32 9.06 -39.29 -0.36 3.97 16 34 H 0.35 5.38 8.58 -39.29 -0.34 5.04 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.03 0.82 6.81 -51.93 -0.35 0.47 16 38 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16 39 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 327.11 15.07 4.93 4.93 Total: -1.00 -32.22 327.11 -8.29 -40.51 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -6.16 Total: 8.30 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: -0.38 Total: -8.71 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: 0.43 Total: -47.75 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.09 Total: -8.91 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Atomic # 16 Polarization: -2.99 SS G_CDS: -2.52 Total: -5.51 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.22 -8.29 -40.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691575404.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.987 kcal (2) G-P(sol) polarization free energy of solvation -32.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds