Wall clock time and date at job start Mon Mar 30 2020 04:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 112.49562 * 2 1 4 4 S 1.81421 * 113.14768 * 230.16570 * 2 1 3 5 5 C 1.81561 * 73.14171 * 216.14606 * 4 2 1 6 6 C 1.53049 * 89.83757 * 28.60090 * 5 4 2 7 7 H 1.08997 * 113.15024 * 211.83527 * 6 5 4 8 8 N 1.46494 * 113.15083 * 82.38148 * 6 5 4 9 9 C 1.34781 * 119.99886 * 104.45612 * 8 6 5 10 10 O 1.21283 * 119.99784 * 359.97438 * 9 8 6 11 11 C 1.50695 * 120.00012 * 179.97438 * 9 8 6 12 12 H 1.08997 * 109.47405 * 39.99893 * 11 9 8 13 13 N 1.46902 * 109.47310 * 159.99689 * 11 9 8 14 14 C 1.52997 * 109.47535 * 279.99630 * 11 9 8 15 15 C 1.53002 * 109.47535 * 174.99737 * 14 11 9 16 16 C 1.50696 * 109.46997 * 179.97438 * 15 14 11 17 17 H 1.07999 * 120.00319 * 0.02562 * 16 15 14 18 18 C 1.37885 * 119.99717 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99913 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 119.99766 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 H 1.09004 * 109.46962 * 290.23179 * 1 2 3 25 25 H 1.08996 * 109.47034 * 50.22789 * 1 2 3 26 26 H 1.08999 * 109.46988 * 170.23110 * 1 2 3 27 27 H 1.09001 * 109.47292 * 189.77744 * 3 2 1 28 28 H 1.09002 * 109.46700 * 309.77468 * 3 2 1 29 29 H 1.08994 * 109.47509 * 69.76933 * 3 2 1 30 30 H 1.08991 * 113.14388 * 273.36749 * 5 4 2 31 31 H 1.09000 * 113.19008 * 143.84405 * 5 4 2 32 32 H 0.97003 * 120.00369 * 284.44958 * 8 6 5 33 33 H 1.00900 * 111.00079 * 296.05153 * 13 11 9 34 34 H 1.00904 * 110.99762 * 59.99982 * 13 11 9 35 35 H 1.09005 * 109.46889 * 55.00061 * 14 11 9 36 36 H 1.09002 * 109.47401 * 295.00150 * 14 11 9 37 37 H 1.09005 * 109.46767 * 60.00250 * 15 14 11 38 38 H 1.09002 * 109.47113 * 300.00590 * 15 14 11 39 39 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1155 1.4136 0.0000 4 16 2.2432 -1.0686 -1.2810 5 6 3.3264 -1.1921 0.1709 6 6 2.1316 -0.9003 1.0817 7 1 2.4052 -0.3583 1.9870 8 7 1.3182 -2.0859 1.3623 9 6 1.4027 -2.6924 2.5630 10 8 2.1526 -2.2568 3.4109 11 6 0.5655 -3.9116 2.8519 12 1 0.5381 -4.5509 1.9695 13 7 1.1523 -4.6534 3.9759 14 6 -0.8570 -3.4796 3.2132 15 6 -1.7383 -4.7186 3.3845 16 6 -3.1393 -4.2930 3.7410 17 1 -3.3775 -3.2438 3.8354 18 6 -4.1171 -5.2432 3.9466 19 7 -5.3399 -4.8718 4.2572 20 14 -3.7049 -7.0578 3.7839 21 1 -3.9270 -7.4921 2.3813 22 1 -2.2828 -7.2773 4.1509 23 1 -4.5775 -7.8467 4.6904 24 1 -0.3633 0.3554 0.9643 25 1 -0.3633 0.6574 -0.7898 26 1 -0.3633 -1.0128 -0.1744 27 1 3.1902 1.3618 -0.1745 28 1 1.6470 2.0007 -0.7899 29 1 1.9262 1.8852 0.9642 30 1 4.0898 -0.4149 0.2032 31 1 3.7404 -2.1903 0.3138 32 1 0.7186 -2.4344 0.6841 33 1 2.0677 -5.0052 3.7385 34 1 1.1889 -4.0818 4.8066 35 1 -1.2602 -2.8544 2.4165 36 1 -0.8396 -2.9145 4.1450 37 1 -1.3351 -5.3438 4.1812 38 1 -1.7558 -5.2838 2.4527 39 1 -6.0279 -5.5402 4.4014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691575404.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:59 Heat of formation + Delta-G solvation = -51.841742 kcal Electronic energy + Delta-G solvation = -19242.415067 eV Core-core repulsion = 16310.334270 eV Total energy + Delta-G solvation = -2932.080798 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.34342 -39.06050 -36.79170 -34.77209 -34.36198 -32.27034 -31.45726 -28.72495 -28.06679 -25.58308 -23.90960 -22.16405 -21.77074 -21.15208 -18.96987 -18.24126 -17.90228 -17.04629 -16.62661 -16.26265 -15.93035 -15.80761 -15.33996 -15.03371 -14.71185 -14.65140 -14.46502 -14.22890 -13.97352 -13.46879 -13.33929 -13.16349 -12.79501 -12.64776 -12.50736 -12.37826 -11.99859 -11.73312 -11.68130 -11.58270 -11.29317 -11.12299 -10.87698 -10.69296 -10.26229 -9.66996 -8.88911 -8.23498 -6.26286 0.70639 0.84164 1.41062 1.44193 1.45682 1.58170 2.00659 2.42922 3.13479 3.16568 3.54326 3.63162 3.74601 3.82451 3.89702 4.09972 4.20432 4.28372 4.47206 4.49542 4.65897 4.72445 4.73917 4.81631 4.84386 4.85817 5.12795 5.16922 5.21916 5.33881 5.52367 5.67667 5.75792 6.07771 6.34262 6.39497 6.53482 6.82533 7.07454 7.38357 8.93317 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.025028 B = 0.004246 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.475356 B = 6592.456162 C = 7032.671320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.018 4.018 3 C -0.127 4.127 4 S -0.330 6.330 5 C -0.083 4.083 6 C 0.140 3.860 7 H 0.119 0.881 8 N -0.696 5.696 9 C 0.496 3.504 10 O -0.573 6.573 11 C 0.084 3.916 12 H 0.117 0.883 13 N -0.818 5.818 14 C -0.078 4.078 15 C 0.001 3.999 16 C -0.529 4.529 17 H 0.030 0.970 18 C 0.003 3.997 19 N -0.955 5.955 20 Si 0.950 3.050 21 H -0.266 1.266 22 H -0.244 1.244 23 H -0.290 1.290 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.061 0.939 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.134 0.866 31 H 0.094 0.906 32 H 0.415 0.585 33 H 0.349 0.651 34 H 0.347 0.653 35 H 0.066 0.934 36 H 0.043 0.957 37 H 0.029 0.971 38 H 0.020 0.980 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.247 9.213 -10.437 23.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.129 4.129 3 C -0.186 4.186 4 S -0.104 6.104 5 C -0.232 4.232 6 C 0.031 3.969 7 H 0.137 0.863 8 N -0.348 5.348 9 C 0.281 3.719 10 O -0.452 6.452 11 C -0.032 4.032 12 H 0.135 0.865 13 N -0.347 5.347 14 C -0.117 4.117 15 C -0.036 4.036 16 C -0.567 4.567 17 H 0.048 0.952 18 C -0.193 4.193 19 N -0.596 5.596 20 Si 0.773 3.227 21 H -0.191 1.191 22 H -0.167 1.167 23 H -0.216 1.216 24 H 0.093 0.907 25 H 0.092 0.908 26 H 0.080 0.920 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.103 0.897 30 H 0.152 0.848 31 H 0.113 0.887 32 H 0.253 0.747 33 H 0.162 0.838 34 H 0.161 0.839 35 H 0.085 0.915 36 H 0.062 0.938 37 H 0.048 0.952 38 H 0.038 0.962 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 18.819 8.445 -11.249 23.495 hybrid contribution 0.147 0.311 0.667 0.751 sum 18.966 8.756 -10.581 23.417 Atomic orbital electron populations 1.21835 0.91244 1.03144 1.03517 1.24029 1.00052 0.98384 0.90388 1.21892 1.01738 0.90858 1.04101 1.89285 1.35087 1.59966 1.26021 1.24893 1.00293 1.07348 0.90696 1.21664 0.89581 0.86661 0.98980 0.86304 1.45838 1.44132 1.28933 1.15866 1.22388 0.82285 0.85980 0.81220 1.90652 1.41230 1.66449 1.46896 1.21667 0.93780 0.90868 0.96860 0.86487 1.59012 1.29522 1.40728 1.05488 1.21255 0.91178 0.98596 1.00656 1.19382 0.92309 0.94978 0.96971 1.21566 0.95121 0.93471 1.46581 0.95180 1.25987 0.94551 1.04415 0.94327 1.70081 1.03348 1.35805 1.50416 0.85661 0.79557 0.78940 0.78518 1.19118 1.16742 1.21597 0.90702 0.90793 0.91952 0.90434 0.90503 0.89744 0.84808 0.88707 0.74709 0.83760 0.83911 0.91542 0.93801 0.95222 0.96152 0.92713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 8.63 71.98 0.62 -1.74 16 2 C -0.02 -0.28 1.29 -10.78 -0.01 -0.30 16 3 C -0.13 -1.42 8.99 71.98 0.65 -0.77 16 4 S -0.33 -6.27 23.44 -56.49 -1.32 -7.60 16 5 C -0.08 -1.29 7.41 72.00 0.53 -0.76 16 6 C 0.14 2.49 3.46 45.03 0.16 2.64 16 7 H 0.12 2.27 7.46 -2.39 -0.02 2.25 16 8 N -0.70 -14.60 4.61 -474.79 -2.19 -16.79 16 9 C 0.50 13.05 7.07 87.65 0.62 13.67 16 10 O -0.57 -17.96 15.86 -3.04 -0.05 -18.01 16 11 C 0.08 2.37 3.15 44.17 0.14 2.51 16 12 H 0.12 2.91 8.14 -2.39 -0.02 2.89 16 13 N -0.82 -23.19 8.44 -171.81 -1.45 -24.64 16 14 C -0.08 -2.85 4.78 30.59 0.15 -2.71 16 15 C 0.00 0.05 3.93 29.85 0.12 0.17 16 16 C -0.53 -30.21 9.66 25.60 0.25 -29.97 16 17 H 0.03 1.89 7.99 -2.91 -0.02 1.86 16 18 C 0.00 0.20 5.47 84.66 0.46 0.66 16 19 N -0.96 -60.26 13.96 21.45 0.30 -59.96 16 20 Si 0.95 44.53 27.47 68.60 1.88 46.41 16 21 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 22 H -0.24 -10.75 6.54 99.48 0.65 -10.09 16 23 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 24 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 25 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.06 1.16 6.81 -2.39 -0.02 1.15 16 27 H 0.08 0.73 6.83 -2.39 -0.02 0.72 16 28 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.13 1.49 7.12 -2.39 -0.02 1.48 16 31 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.41 8.16 7.07 -92.71 -0.66 7.50 16 33 H 0.35 8.25 9.06 -89.69 -0.81 7.43 16 34 H 0.35 10.28 8.58 -89.69 -0.77 9.51 16 35 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 36 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.03 1.37 6.81 -2.38 -0.02 1.36 16 38 H 0.02 0.87 7.57 -2.39 -0.02 0.86 16 39 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -69.48 327.11 -0.38 -69.85 By element: Atomic # 1 Polarization: 28.54 SS G_CDS: -1.22 Total: 27.32 kcal Atomic # 6 Polarization: -20.27 SS G_CDS: 3.68 Total: -16.59 kcal Atomic # 7 Polarization: -98.04 SS G_CDS: -3.34 Total: -101.38 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -0.05 Total: -18.01 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.88 Total: 46.41 kcal Atomic # 16 Polarization: -6.27 SS G_CDS: -1.32 Total: -7.60 kcal Total: -69.48 -0.38 -69.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691575404.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.012 kcal (2) G-P(sol) polarization free energy of solvation -69.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds