Wall clock time and date at job start Mon Mar 30 2020 04:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 112.49368 * 2 1 4 4 S 1.81423 * 113.15025 * 230.17615 * 2 1 3 5 5 C 1.81425 * 73.13790 * 216.13676 * 4 2 1 6 6 C 1.53043 * 113.14856 * 129.77247 * 2 1 3 7 7 H 1.09004 * 113.14958 * 32.85947 * 6 2 1 8 8 N 1.46498 * 113.15338 * 263.40609 * 6 2 1 9 9 C 1.34777 * 119.99828 * 154.72148 * 8 6 2 10 10 O 1.21283 * 120.00222 * 0.28168 * 9 8 6 11 11 C 1.50703 * 120.00290 * 180.27728 * 9 8 6 12 12 H 1.09002 * 109.46677 * 320.00686 * 11 9 8 13 13 N 1.46895 * 109.47575 * 200.00222 * 11 9 8 14 14 C 1.53002 * 109.47048 * 79.99919 * 11 9 8 15 15 C 1.53001 * 109.47228 * 185.00273 * 14 11 9 16 16 C 1.50693 * 109.46990 * 180.02562 * 15 14 11 17 17 H 1.07995 * 120.00457 * 0.02562 * 16 15 14 18 18 C 1.37883 * 119.99994 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99445 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00232 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46841 * 60.00699 * 20 18 16 22 22 H 1.48497 * 109.47242 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47288 * 300.00861 * 20 18 16 24 24 H 1.09001 * 109.47583 * 290.22829 * 1 2 3 25 25 H 1.09006 * 109.46959 * 50.22489 * 1 2 3 26 26 H 1.09000 * 109.47342 * 170.22602 * 1 2 3 27 27 H 1.08995 * 109.47269 * 189.77353 * 3 2 1 28 28 H 1.08995 * 109.47479 * 309.77544 * 3 2 1 29 29 H 1.09008 * 109.47319 * 69.77622 * 3 2 1 30 30 H 1.09000 * 113.15161 * 273.34310 * 5 4 2 31 31 H 1.09001 * 113.15090 * 143.85582 * 5 4 2 32 32 H 0.97001 * 120.00384 * 335.00595 * 8 6 2 33 33 H 1.00902 * 110.99981 * 300.00025 * 13 11 9 34 34 H 1.00907 * 110.99558 * 63.95279 * 13 11 9 35 35 H 1.08997 * 109.47150 * 305.00850 * 14 11 9 36 36 H 1.09001 * 109.46651 * 65.00479 * 14 11 9 37 37 H 1.08995 * 109.46793 * 300.00292 * 15 14 11 38 38 H 1.08999 * 109.46867 * 59.99778 * 15 14 11 39 39 H 0.97007 * 119.99691 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1153 1.4136 0.0000 4 16 2.2432 -1.0683 -1.2812 5 6 3.3256 -1.1918 0.1696 6 6 2.1316 -0.9003 1.0816 7 1 1.5259 -1.7820 1.2909 8 7 2.5002 -0.1718 2.2979 9 6 2.5522 -0.8169 3.4801 10 8 2.2988 -2.0016 3.5362 11 6 2.9254 -0.0662 4.7325 12 1 3.7295 0.6352 4.5096 13 7 3.3752 -1.0171 5.7578 14 6 1.7071 0.7020 5.2487 15 6 2.1161 1.5617 6.4465 16 6 0.9160 2.3178 6.9552 17 1 -0.0426 2.1971 6.4729 18 6 1.0417 3.1631 8.0373 19 7 2.2090 3.3098 8.6249 20 14 -0.4457 4.1010 8.6676 21 1 -1.4974 3.1389 9.0843 22 1 -0.0488 4.9352 9.8302 23 1 -0.9735 4.9747 7.5890 24 1 -0.3634 0.3553 0.9643 25 1 -0.3633 0.6575 -0.7899 26 1 -0.3634 -1.0127 -0.1745 27 1 3.1900 1.3619 -0.1744 28 1 1.6469 2.0009 -0.7898 29 1 1.9261 1.8853 0.9644 30 1 4.0892 -0.4146 0.2019 31 1 3.7396 -2.1900 0.3117 32 1 2.7029 0.7758 2.2532 33 1 2.6468 -1.6785 5.9820 34 1 4.2171 -1.4912 5.4668 35 1 1.3194 1.3430 4.4569 36 1 0.9353 -0.0042 5.5550 37 1 2.5037 0.9206 7.2382 38 1 2.8880 2.2678 6.1402 39 1 2.2976 3.9047 9.3860 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691575410.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:02 Heat of formation + Delta-G solvation = -33.698681 kcal Electronic energy + Delta-G solvation = -19167.448078 eV Core-core repulsion = 16236.154022 eV Total energy + Delta-G solvation = -2931.294056 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.26669 -38.13384 -35.23519 -33.29537 -32.82448 -30.68301 -30.12375 -27.97157 -26.53771 -24.24516 -23.01242 -21.05838 -20.35377 -19.94326 -17.41381 -16.76547 -16.20780 -15.99775 -15.64969 -14.99189 -14.91008 -14.61970 -14.30374 -14.07694 -13.67816 -13.54537 -12.79123 -12.65598 -12.44704 -12.34558 -12.06415 -11.94511 -11.63131 -11.58751 -10.98727 -10.90200 -10.73065 -10.61379 -10.48729 -10.16101 -9.84017 -9.41872 -9.27697 -9.04278 -8.40662 -8.25643 -8.09471 -5.96427 -3.98831 1.41295 1.55980 2.62506 3.12799 3.34055 3.39073 3.41143 3.93813 4.32134 4.42281 4.47560 4.56661 4.77672 4.86266 5.00546 5.17418 5.24434 5.38471 5.39076 5.42233 5.44919 5.46532 5.52079 5.76426 5.76800 5.87066 6.23464 6.37763 6.59552 7.03491 7.27674 7.48487 7.72192 7.74585 7.92548 8.09755 8.17828 8.45089 9.08948 9.64499 11.14392 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.024704 B = 0.003984 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.144396 B = 7025.551251 C = 7718.491826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.036 4.036 3 C -0.137 4.137 4 S -0.277 6.277 5 C -0.101 4.101 6 C 0.152 3.848 7 H 0.132 0.868 8 N -0.718 5.718 9 C 0.486 3.514 10 O -0.548 6.548 11 C 0.079 3.921 12 H 0.099 0.901 13 N -0.806 5.806 14 C -0.095 4.095 15 C 0.031 3.969 16 C -0.524 4.524 17 H 0.051 0.949 18 C 0.059 3.941 19 N -0.892 5.892 20 Si 0.889 3.111 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.278 1.278 24 H 0.075 0.925 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.107 0.893 31 H 0.099 0.901 32 H 0.406 0.594 33 H 0.348 0.652 34 H 0.334 0.666 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.035 0.965 38 H 0.013 0.987 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.877 -5.843 -17.859 18.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.146 4.146 3 C -0.196 4.196 4 S -0.050 6.050 5 C -0.251 4.251 6 C 0.044 3.956 7 H 0.150 0.850 8 N -0.372 5.372 9 C 0.272 3.728 10 O -0.425 6.425 11 C -0.037 4.037 12 H 0.117 0.883 13 N -0.334 5.334 14 C -0.134 4.134 15 C -0.006 4.006 16 C -0.562 4.562 17 H 0.070 0.930 18 C -0.142 4.142 19 N -0.531 5.531 20 Si 0.717 3.283 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.204 1.204 24 H 0.094 0.906 25 H 0.084 0.916 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.125 0.875 31 H 0.118 0.882 32 H 0.243 0.757 33 H 0.162 0.838 34 H 0.146 0.854 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.053 0.947 38 H 0.031 0.969 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.696 -6.456 -18.538 19.703 hybrid contribution -0.638 0.639 0.442 1.006 sum 1.057 -5.817 -18.096 19.038 Atomic orbital electron populations 1.21848 0.91031 1.03306 1.03272 1.24067 1.00308 0.98083 0.92169 1.21911 1.01448 0.92758 1.03464 1.88977 1.33801 1.59288 1.22927 1.24942 1.01122 1.06734 0.92265 1.22543 0.93706 0.95833 0.83545 0.85041 1.46293 1.70740 1.13569 1.06631 1.22920 0.75346 0.88489 0.86033 1.90656 1.49153 1.16123 1.86591 1.21872 1.01110 0.94857 0.85894 0.88328 1.58991 1.09432 1.23816 1.41176 1.21668 0.93324 0.97860 1.00517 1.19010 0.96153 0.93635 0.91768 1.21230 0.95612 1.25294 1.14103 0.93043 1.24984 0.95647 0.96946 0.96668 1.69961 1.23068 1.37799 1.22310 0.86717 0.83301 0.79942 0.78353 1.20307 1.21321 1.20371 0.90604 0.91641 0.91174 0.91210 0.90790 0.90529 0.87457 0.88238 0.75739 0.83752 0.85400 0.92822 0.92776 0.94652 0.96873 0.93016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.13 37.15 0.34 -0.86 16 2 C -0.04 -0.32 1.31 -90.60 -0.12 -0.44 16 3 C -0.14 -1.03 8.21 37.16 0.31 -0.72 16 4 S -0.28 -2.88 23.92 -107.50 -2.57 -5.45 16 5 C -0.10 -0.94 7.39 37.18 0.27 -0.67 16 6 C 0.15 1.57 3.27 -67.88 -0.22 1.35 16 7 H 0.13 1.60 7.45 -51.93 -0.39 1.21 16 8 N -0.72 -7.80 5.24 -63.99 -0.34 -8.14 16 9 C 0.49 6.90 7.07 -10.98 -0.08 6.82 16 10 O -0.55 -9.31 15.86 5.55 0.09 -9.22 16 11 C 0.08 1.22 3.15 -68.86 -0.22 1.00 16 12 H 0.10 1.42 8.14 -51.93 -0.42 0.99 16 13 N -0.81 -12.84 8.44 -5.65 -0.05 -12.89 16 14 C -0.10 -1.81 4.78 -26.73 -0.13 -1.94 16 15 C 0.03 0.77 4.86 -27.89 -0.14 0.64 16 16 C -0.52 -14.43 9.11 -34.44 -0.31 -14.74 16 17 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -26.44 13.29 55.43 0.74 -25.70 16 20 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 27 H 0.07 0.49 6.83 -51.93 -0.35 0.13 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.54 6.82 -51.92 -0.35 0.19 16 30 H 0.11 0.87 7.12 -51.93 -0.37 0.50 16 31 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.41 3.69 6.57 -40.82 -0.27 3.43 16 33 H 0.35 5.66 8.58 -39.29 -0.34 5.32 16 34 H 0.33 4.58 9.06 -39.29 -0.36 4.22 16 35 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.04 0.95 7.75 -51.93 -0.40 0.55 16 38 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 330.79 15.07 4.98 4.98 Total: -1.00 -31.33 330.79 -8.73 -40.06 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -6.17 Total: 8.04 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: -0.39 Total: -8.01 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: 0.35 Total: -46.73 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.09 Total: -9.22 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -2.88 SS G_CDS: -2.57 Total: -5.45 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.33 -8.73 -40.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691575410.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.360 kcal (2) G-P(sol) polarization free energy of solvation -31.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds