Wall clock time and date at job start Mon Mar 30 2020 04:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 112.49368 * 2 1 4 4 S 1.81423 * 113.15025 * 230.17615 * 2 1 3 5 5 C 1.81425 * 73.13790 * 216.13676 * 4 2 1 6 6 C 1.53043 * 113.14856 * 129.77247 * 2 1 3 7 7 H 1.09004 * 113.14958 * 32.85947 * 6 2 1 8 8 N 1.46498 * 113.15338 * 263.40609 * 6 2 1 9 9 C 1.34777 * 119.99828 * 154.72148 * 8 6 2 10 10 O 1.21283 * 120.00222 * 0.28168 * 9 8 6 11 11 C 1.50703 * 120.00290 * 180.27728 * 9 8 6 12 12 H 1.09002 * 109.46677 * 320.00686 * 11 9 8 13 13 N 1.46895 * 109.47575 * 200.00222 * 11 9 8 14 14 C 1.53002 * 109.47048 * 79.99919 * 11 9 8 15 15 C 1.53001 * 109.47228 * 185.00273 * 14 11 9 16 16 C 1.50693 * 109.46990 * 180.02562 * 15 14 11 17 17 H 1.07995 * 120.00457 * 0.02562 * 16 15 14 18 18 C 1.37883 * 119.99994 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99445 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00232 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46841 * 60.00699 * 20 18 16 22 22 H 1.48497 * 109.47242 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47288 * 300.00861 * 20 18 16 24 24 H 1.09001 * 109.47583 * 290.22829 * 1 2 3 25 25 H 1.09006 * 109.46959 * 50.22489 * 1 2 3 26 26 H 1.09000 * 109.47342 * 170.22602 * 1 2 3 27 27 H 1.08995 * 109.47269 * 189.77353 * 3 2 1 28 28 H 1.08995 * 109.47479 * 309.77544 * 3 2 1 29 29 H 1.09008 * 109.47319 * 69.77622 * 3 2 1 30 30 H 1.09000 * 113.15161 * 273.34310 * 5 4 2 31 31 H 1.09001 * 113.15090 * 143.85582 * 5 4 2 32 32 H 0.97001 * 120.00384 * 335.00595 * 8 6 2 33 33 H 1.00902 * 110.99981 * 300.00025 * 13 11 9 34 34 H 1.00907 * 110.99558 * 63.95279 * 13 11 9 35 35 H 1.08997 * 109.47150 * 305.00850 * 14 11 9 36 36 H 1.09001 * 109.46651 * 65.00479 * 14 11 9 37 37 H 1.08995 * 109.46793 * 300.00292 * 15 14 11 38 38 H 1.08999 * 109.46867 * 59.99778 * 15 14 11 39 39 H 0.97007 * 119.99691 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1153 1.4136 0.0000 4 16 2.2432 -1.0683 -1.2812 5 6 3.3256 -1.1918 0.1696 6 6 2.1316 -0.9003 1.0816 7 1 1.5259 -1.7820 1.2909 8 7 2.5002 -0.1718 2.2979 9 6 2.5522 -0.8169 3.4801 10 8 2.2988 -2.0016 3.5362 11 6 2.9254 -0.0662 4.7325 12 1 3.7295 0.6352 4.5096 13 7 3.3752 -1.0171 5.7578 14 6 1.7071 0.7020 5.2487 15 6 2.1161 1.5617 6.4465 16 6 0.9160 2.3178 6.9552 17 1 -0.0426 2.1971 6.4729 18 6 1.0417 3.1631 8.0373 19 7 2.2090 3.3098 8.6249 20 14 -0.4457 4.1010 8.6676 21 1 -1.4974 3.1389 9.0843 22 1 -0.0488 4.9352 9.8302 23 1 -0.9735 4.9747 7.5890 24 1 -0.3634 0.3553 0.9643 25 1 -0.3633 0.6575 -0.7899 26 1 -0.3634 -1.0127 -0.1745 27 1 3.1900 1.3619 -0.1744 28 1 1.6469 2.0009 -0.7898 29 1 1.9261 1.8853 0.9644 30 1 4.0892 -0.4146 0.2019 31 1 3.7396 -2.1900 0.3117 32 1 2.7029 0.7758 2.2532 33 1 2.6468 -1.6785 5.9820 34 1 4.2171 -1.4912 5.4668 35 1 1.3194 1.3430 4.4569 36 1 0.9353 -0.0042 5.5550 37 1 2.5037 0.9206 7.2382 38 1 2.8880 2.2678 6.1402 39 1 2.2976 3.9047 9.3860 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691575410.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:01 Heat of formation + Delta-G solvation = -55.719268 kcal Electronic energy + Delta-G solvation = -19168.402962 eV Core-core repulsion = 16236.154022 eV Total energy + Delta-G solvation = -2932.248940 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.33556 -39.08695 -36.73029 -34.78342 -34.24366 -31.89329 -31.45774 -28.61466 -28.14992 -25.77027 -24.03424 -22.50582 -21.33994 -21.21673 -18.74914 -18.12008 -17.59435 -17.05094 -16.76742 -16.44167 -15.94995 -15.79974 -15.61005 -14.99932 -14.93852 -14.53998 -14.23767 -13.82264 -13.47244 -13.40970 -13.35245 -13.13232 -12.75423 -12.72170 -12.50631 -12.32600 -12.23158 -11.77629 -11.72801 -11.60905 -11.28031 -11.17680 -10.94901 -10.45213 -10.25368 -9.59296 -8.92389 -8.10850 -6.20590 0.65522 0.76622 1.44072 1.46492 1.48384 1.54287 2.12546 2.47139 3.14834 3.22620 3.57184 3.58566 3.63739 3.84791 3.87859 4.12424 4.16059 4.35756 4.45138 4.60290 4.64553 4.73673 4.78863 4.80335 4.82677 4.98580 5.12294 5.22989 5.28629 5.30511 5.60968 5.89150 6.02881 6.12736 6.33945 6.41522 6.55930 6.98642 7.10042 7.47529 9.00041 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.024704 B = 0.003984 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.144396 B = 7025.551251 C = 7718.491826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.022 4.022 3 C -0.138 4.138 4 S -0.308 6.308 5 C -0.090 4.090 6 C 0.149 3.851 7 H 0.113 0.887 8 N -0.700 5.700 9 C 0.495 3.505 10 O -0.576 6.576 11 C 0.086 3.914 12 H 0.114 0.886 13 N -0.820 5.820 14 C -0.082 4.082 15 C 0.039 3.961 16 C -0.543 4.543 17 H 0.056 0.944 18 C 0.003 3.997 19 N -0.930 5.930 20 Si 0.956 3.044 21 H -0.272 1.272 22 H -0.286 1.286 23 H -0.265 1.265 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.063 0.937 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.125 0.875 31 H 0.097 0.903 32 H 0.417 0.583 33 H 0.345 0.655 34 H 0.347 0.653 35 H 0.071 0.929 36 H 0.042 0.958 37 H 0.004 0.996 38 H -0.004 1.004 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.387 -4.957 -18.966 19.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.133 4.133 3 C -0.197 4.197 4 S -0.081 6.081 5 C -0.239 4.239 6 C 0.041 3.959 7 H 0.131 0.869 8 N -0.354 5.354 9 C 0.280 3.720 10 O -0.456 6.456 11 C -0.030 4.030 12 H 0.132 0.868 13 N -0.349 5.349 14 C -0.121 4.121 15 C 0.001 3.999 16 C -0.581 4.581 17 H 0.075 0.925 18 C -0.195 4.195 19 N -0.570 5.570 20 Si 0.781 3.219 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.190 1.190 24 H 0.093 0.907 25 H 0.094 0.906 26 H 0.082 0.918 27 H 0.096 0.904 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.144 0.856 31 H 0.115 0.885 32 H 0.257 0.743 33 H 0.159 0.841 34 H 0.160 0.840 35 H 0.090 0.910 36 H 0.060 0.940 37 H 0.023 0.977 38 H 0.014 0.986 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.209 -5.552 -19.690 20.494 hybrid contribution -0.469 0.347 0.766 0.963 sum 0.740 -5.205 -18.924 19.641 Atomic orbital electron populations 1.21863 0.90910 1.03207 1.03574 1.24062 1.00384 0.98447 0.90369 1.21968 1.01982 0.91518 1.04203 1.89154 1.34911 1.60284 1.23790 1.24918 1.00811 1.07308 0.90886 1.22532 0.94364 0.95613 0.83415 0.86897 1.46097 1.69412 1.14022 1.05901 1.22460 0.75204 0.87877 0.86421 1.90657 1.50572 1.17305 1.87024 1.21674 0.99999 0.94916 0.86424 0.86809 1.58973 1.10013 1.24070 1.41833 1.21401 0.94486 0.97324 0.98855 1.18829 0.94771 0.93251 0.93019 1.21717 0.96663 1.25401 1.14298 0.92543 1.25864 0.98532 0.98055 0.97028 1.70095 1.25284 1.38725 1.22898 0.85642 0.79633 0.78648 0.77944 1.19740 1.21144 1.19013 0.90666 0.90636 0.91827 0.90365 0.90079 0.89719 0.85647 0.88461 0.74349 0.84138 0.83976 0.91036 0.93961 0.97735 0.98562 0.93006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.13 71.98 0.66 -1.54 16 2 C -0.02 -0.36 1.31 -10.78 -0.01 -0.37 16 3 C -0.14 -1.68 8.21 71.98 0.59 -1.09 16 4 S -0.31 -5.99 23.92 -56.49 -1.35 -7.34 16 5 C -0.09 -1.51 7.39 72.00 0.53 -0.98 16 6 C 0.15 2.83 3.27 45.02 0.15 2.97 16 7 H 0.11 2.67 7.45 -2.38 -0.02 2.65 16 8 N -0.70 -13.72 5.24 -474.77 -2.49 -16.20 16 9 C 0.49 13.31 7.07 87.66 0.62 13.93 16 10 O -0.58 -19.09 15.86 -3.04 -0.05 -19.14 16 11 C 0.09 2.56 3.15 44.17 0.14 2.70 16 12 H 0.11 3.06 8.14 -2.39 -0.02 3.04 16 13 N -0.82 -25.83 8.44 -171.80 -1.45 -27.28 16 14 C -0.08 -3.06 4.78 30.60 0.15 -2.91 16 15 C 0.04 1.91 4.86 29.85 0.15 2.06 16 16 C -0.54 -29.79 9.11 25.60 0.23 -29.56 16 17 H 0.06 2.97 7.74 -2.91 -0.02 2.94 16 18 C 0.00 0.17 5.46 84.66 0.46 0.64 16 19 N -0.93 -55.59 13.29 21.45 0.28 -55.30 16 20 Si 0.96 43.40 29.54 68.60 2.03 45.42 16 21 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 22 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 23 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 24 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 26 H 0.06 1.10 8.10 -2.39 -0.02 1.08 16 27 H 0.08 0.84 6.83 -2.39 -0.02 0.83 16 28 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.08 0.92 6.82 -2.38 -0.02 0.91 16 30 H 0.13 1.68 7.12 -2.39 -0.02 1.66 16 31 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.42 6.37 6.57 -92.71 -0.61 5.76 16 33 H 0.35 11.24 8.58 -89.69 -0.77 10.48 16 34 H 0.35 9.26 9.06 -89.69 -0.81 8.45 16 35 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.00 0.23 7.75 -2.39 -0.02 0.22 16 38 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 39 H 0.26 14.79 8.31 -92.70 -0.77 14.02 16 Total: -1.00 -67.00 330.79 -0.49 -67.49 By element: Atomic # 1 Polarization: 27.64 SS G_CDS: -1.12 Total: 26.51 kcal Atomic # 6 Polarization: -17.82 SS G_CDS: 3.66 Total: -14.16 kcal Atomic # 7 Polarization: -95.13 SS G_CDS: -3.65 Total: -98.78 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.05 Total: -19.14 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 16 Polarization: -5.99 SS G_CDS: -1.35 Total: -7.34 kcal Total: -67.00 -0.49 -67.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691575410.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.768 kcal (2) G-P(sol) polarization free energy of solvation -66.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds