Wall clock time and date at job start Mon Mar 30 2020 04:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 H 1.08989 * 109.47407 * 54.99632 * 11 10 9 13 13 N 1.46904 * 109.46937 * 294.99269 * 11 10 9 14 14 C 1.50703 * 109.47021 * 175.00079 * 11 10 9 15 15 O 1.21284 * 120.00053 * 99.99657 * 14 11 10 16 16 N 1.34778 * 119.99500 * 279.99392 * 14 11 10 17 17 C 1.46501 * 119.99693 * 180.02562 * 16 14 11 18 18 C 1.52999 * 109.47574 * 180.02562 * 17 16 14 19 19 H 1.09003 * 109.60067 * 53.87899 * 18 17 16 20 20 C 1.53852 * 109.61262 * 174.04465 * 18 17 16 21 21 C 1.55136 * 106.89734 * 167.17352 * 20 18 17 22 22 S 1.83458 * 102.20703 * 317.88453 * 21 20 18 23 23 C 1.54279 * 109.60470 * 293.54884 * 18 17 16 24 24 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 26 26 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 27 27 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 28 28 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 29 29 H 1.00900 * 111.00049 * 300.00428 * 13 11 10 30 30 H 1.00908 * 110.99698 * 63.95725 * 13 11 10 31 31 H 0.96993 * 120.00201 * 0.02562 * 16 14 11 32 32 H 1.09000 * 109.47066 * 300.00132 * 17 16 14 33 33 H 1.09010 * 109.47235 * 59.99774 * 17 16 14 34 34 H 1.08993 * 109.97405 * 286.53273 * 20 18 17 35 35 H 1.08995 * 109.97432 * 47.81680 * 20 18 17 36 36 H 1.09000 * 110.85847 * 199.70154 * 21 20 18 37 37 H 1.09011 * 110.85641 * 76.06388 * 21 20 18 38 38 H 1.08995 * 110.40082 * 330.91558 * 23 18 17 39 39 H 1.09001 * 110.40240 * 93.33236 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 6 1.4800 -4.9871 -0.0171 12 1 0.7883 -5.0030 -0.8591 13 7 0.7279 -5.1244 1.2373 14 6 2.4547 -6.1293 -0.1459 15 8 2.7861 -6.7575 0.8372 16 7 2.9579 -6.4526 -1.3536 17 6 3.9050 -7.5633 -1.4790 18 6 4.3188 -7.7180 -2.9438 19 1 4.6916 -6.7656 -3.3209 20 6 5.4234 -8.7828 -3.0587 21 6 5.5633 -9.1266 -4.5650 22 16 3.8130 -9.2075 -5.1087 23 6 3.1027 -8.1660 -3.7808 24 1 -0.4850 0.8401 -0.0004 25 1 0.6242 -2.5609 0.8844 26 1 0.6244 -2.5529 -0.8956 27 1 2.8718 -3.6005 -0.9002 28 1 2.8717 -3.6084 0.8798 29 1 1.3474 -5.1125 2.0336 30 1 0.0230 -4.4067 1.3167 31 1 2.6931 -5.9500 -2.1398 32 1 4.7871 -7.3589 -0.8722 33 1 3.4330 -8.4839 -1.1353 34 1 6.3644 -8.3856 -2.6785 35 1 5.1412 -9.6739 -2.4981 36 1 6.0563 -10.0894 -4.6992 37 1 6.0982 -8.3383 -5.0950 38 1 2.4139 -8.7481 -3.1687 39 1 2.5953 -7.3006 -4.2071 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691603866.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:43 Heat of formation + Delta-G solvation = -65.654791 kcal Electronic energy + Delta-G solvation = -18625.907297 eV Core-core repulsion = 15693.227520 eV Total energy + Delta-G solvation = -2932.679777 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.77946 -37.55744 -35.48463 -34.00001 -32.87102 -30.24524 -29.90291 -27.66008 -26.15437 -24.30152 -23.03925 -20.95448 -20.66703 -19.72100 -17.46192 -16.86721 -16.49644 -16.22408 -15.91614 -14.90102 -14.80257 -14.46312 -14.23941 -14.14377 -13.67667 -13.42378 -13.14973 -12.91077 -12.51852 -12.30745 -12.17269 -11.93758 -11.73587 -11.66199 -11.23941 -11.11016 -10.93665 -10.73193 -10.24885 -10.02054 -9.94937 -9.33158 -9.24746 -9.06806 -8.46326 -8.21726 -8.01144 -6.10967 -4.14380 1.47771 2.02435 2.88943 3.16298 3.26485 3.31634 3.33789 4.08928 4.17667 4.36876 4.38106 4.65055 4.74283 4.85048 5.05573 5.13179 5.16037 5.21306 5.25158 5.27077 5.37652 5.46443 5.54912 5.60964 5.73233 5.76723 6.24528 6.41882 6.48564 6.83908 7.38595 7.48457 7.57721 7.64848 7.85652 7.88149 8.28140 8.40882 8.91345 9.50604 10.99877 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.022092 B = 0.003372 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.141358 B = 8301.488911 C = 8929.227528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.526 4.526 8 H 0.054 0.946 9 C 0.024 3.976 10 C -0.137 4.137 11 C 0.075 3.925 12 H 0.096 0.904 13 N -0.831 5.831 14 C 0.526 3.474 15 O -0.538 6.538 16 N -0.736 5.736 17 C 0.133 3.867 18 C -0.109 4.109 19 H 0.093 0.907 20 C -0.121 4.121 21 C -0.071 4.071 22 S -0.299 6.299 23 C -0.068 4.068 24 H 0.262 0.738 25 H 0.018 0.982 26 H 0.018 0.982 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.345 0.655 30 H 0.355 0.645 31 H 0.402 0.598 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.941 -16.564 -8.025 20.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.564 4.564 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.177 4.177 11 C -0.041 4.041 12 H 0.114 0.886 13 N -0.363 5.363 14 C 0.313 3.687 15 O -0.413 6.413 16 N -0.390 5.390 17 C 0.007 3.993 18 C -0.129 4.129 19 H 0.111 0.889 20 C -0.160 4.160 21 C -0.219 4.219 22 S -0.073 6.073 23 C -0.216 4.216 24 H 0.072 0.928 25 H 0.036 0.964 26 H 0.037 0.963 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.159 0.841 30 H 0.170 0.830 31 H 0.236 0.764 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.108 0.892 35 H 0.102 0.898 36 H 0.122 0.878 37 H 0.110 0.890 38 H 0.116 0.884 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 8.267 -18.183 -8.519 21.715 hybrid contribution 1.242 2.794 0.648 3.126 sum 9.509 -15.389 -7.870 19.727 Atomic orbital electron populations 1.69939 1.06024 1.26934 1.50264 1.25014 0.94876 0.99310 0.95085 0.86639 0.79597 0.83005 0.78662 1.20220 1.21190 1.20211 1.21144 0.92974 0.90921 1.51359 0.92783 1.19097 0.93710 0.91083 0.97374 1.22379 0.99873 0.93981 1.01450 1.21474 0.94664 0.92249 0.95673 0.88572 1.58747 1.18457 1.55871 1.03223 1.20913 0.81030 0.84446 0.82325 1.90639 1.60190 1.53164 1.37341 1.45994 1.47398 1.35239 1.10367 1.21256 0.93364 0.90587 0.94056 1.22268 0.94180 1.00848 0.95614 0.88908 1.22538 0.99184 0.99365 0.94939 1.24238 0.94402 1.05593 0.97657 1.87705 1.08180 1.69214 1.42177 1.24147 0.99697 1.01319 0.96474 0.92789 0.96388 0.96322 0.92592 0.92684 0.84140 0.83012 0.76406 0.91120 0.91152 0.89209 0.89764 0.87808 0.88957 0.88397 0.88276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.83 13.29 55.43 0.74 -25.09 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.53 -14.27 9.11 -34.44 -0.31 -14.58 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 9 C 0.02 0.58 4.74 -27.88 -0.13 0.45 16 10 C -0.14 -2.62 4.78 -26.74 -0.13 -2.74 16 11 C 0.07 1.23 3.21 -68.86 -0.22 1.01 16 12 H 0.10 1.48 8.14 -51.94 -0.42 1.06 16 13 N -0.83 -14.11 8.94 -5.66 -0.05 -14.16 16 14 C 0.53 8.31 7.08 -10.98 -0.08 8.23 16 15 O -0.54 -10.20 16.25 5.55 0.09 -10.11 16 16 N -0.74 -8.59 5.38 -60.29 -0.32 -8.92 16 17 C 0.13 1.29 4.97 -4.04 -0.02 1.27 16 18 C -0.11 -0.80 2.62 -89.51 -0.23 -1.04 16 19 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 20 C -0.12 -0.75 5.78 -25.16 -0.15 -0.89 16 21 C -0.07 -0.46 7.38 38.29 0.28 -0.18 16 22 S -0.30 -2.80 23.26 -107.50 -2.50 -5.30 16 23 C -0.07 -0.56 6.45 37.83 0.24 -0.31 16 24 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 25 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.35 5.96 8.58 -39.29 -0.34 5.62 16 30 H 0.35 6.04 7.55 -39.29 -0.30 5.74 16 31 H 0.40 3.93 8.30 -40.82 -0.34 3.59 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.74 8.01 -51.92 -0.42 0.32 16 34 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.53 8.11 -51.93 -0.42 0.10 16 36 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.09 0.54 8.14 -51.92 -0.42 0.12 16 38 H 0.10 0.83 7.80 -51.93 -0.41 0.43 16 39 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 332.23 15.07 5.01 5.01 Total: -1.00 -31.48 332.23 -9.25 -40.73 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -6.34 Total: 9.02 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: -0.84 Total: -7.24 kcal Atomic # 7 Polarization: -48.53 SS G_CDS: 0.36 Total: -48.17 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.09 Total: -10.11 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: -2.80 SS G_CDS: -2.50 Total: -5.30 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.48 -9.25 -40.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691603866.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.926 kcal (2) G-P(sol) polarization free energy of solvation -31.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds