Wall clock time and date at job start Mon Mar 30 2020 04:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 H 1.08989 * 109.47407 * 54.99632 * 11 10 9 13 13 N 1.46904 * 109.46937 * 294.99269 * 11 10 9 14 14 C 1.50703 * 109.47021 * 175.00079 * 11 10 9 15 15 O 1.21284 * 120.00053 * 99.99657 * 14 11 10 16 16 N 1.34778 * 119.99500 * 279.99392 * 14 11 10 17 17 C 1.46501 * 119.99693 * 180.02562 * 16 14 11 18 18 C 1.52999 * 109.47574 * 180.02562 * 17 16 14 19 19 H 1.09003 * 109.60067 * 53.87899 * 18 17 16 20 20 C 1.53852 * 109.61262 * 174.04465 * 18 17 16 21 21 C 1.55136 * 106.89734 * 167.17352 * 20 18 17 22 22 S 1.83458 * 102.20703 * 317.88453 * 21 20 18 23 23 C 1.54279 * 109.60470 * 293.54884 * 18 17 16 24 24 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 26 26 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 27 27 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 28 28 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 29 29 H 1.00900 * 111.00049 * 300.00428 * 13 11 10 30 30 H 1.00908 * 110.99698 * 63.95725 * 13 11 10 31 31 H 0.96993 * 120.00201 * 0.02562 * 16 14 11 32 32 H 1.09000 * 109.47066 * 300.00132 * 17 16 14 33 33 H 1.09010 * 109.47235 * 59.99774 * 17 16 14 34 34 H 1.08993 * 109.97405 * 286.53273 * 20 18 17 35 35 H 1.08995 * 109.97432 * 47.81680 * 20 18 17 36 36 H 1.09000 * 110.85847 * 199.70154 * 21 20 18 37 37 H 1.09011 * 110.85641 * 76.06388 * 21 20 18 38 38 H 1.08995 * 110.40082 * 330.91558 * 23 18 17 39 39 H 1.09001 * 110.40240 * 93.33236 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 6 1.4800 -4.9871 -0.0171 12 1 0.7883 -5.0030 -0.8591 13 7 0.7279 -5.1244 1.2373 14 6 2.4547 -6.1293 -0.1459 15 8 2.7861 -6.7575 0.8372 16 7 2.9579 -6.4526 -1.3536 17 6 3.9050 -7.5633 -1.4790 18 6 4.3188 -7.7180 -2.9438 19 1 4.6916 -6.7656 -3.3209 20 6 5.4234 -8.7828 -3.0587 21 6 5.5633 -9.1266 -4.5650 22 16 3.8130 -9.2075 -5.1087 23 6 3.1027 -8.1660 -3.7808 24 1 -0.4850 0.8401 -0.0004 25 1 0.6242 -2.5609 0.8844 26 1 0.6244 -2.5529 -0.8956 27 1 2.8718 -3.6005 -0.9002 28 1 2.8717 -3.6084 0.8798 29 1 1.3474 -5.1125 2.0336 30 1 0.0230 -4.4067 1.3167 31 1 2.6931 -5.9500 -2.1398 32 1 4.7871 -7.3589 -0.8722 33 1 3.4330 -8.4839 -1.1353 34 1 6.3644 -8.3856 -2.6785 35 1 5.1412 -9.6739 -2.4981 36 1 6.0563 -10.0894 -4.6992 37 1 6.0982 -8.3383 -5.0950 38 1 2.4139 -8.7481 -3.1687 39 1 2.5953 -7.3006 -4.2071 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691603866.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:42 Heat of formation + Delta-G solvation = -87.647865 kcal Electronic energy + Delta-G solvation = -18626.860988 eV Core-core repulsion = 15693.227520 eV Total energy + Delta-G solvation = -2933.633468 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.98354 -38.36040 -37.00453 -34.96963 -34.82353 -31.67921 -30.92339 -28.73303 -27.49744 -25.67428 -24.05963 -22.32670 -21.66565 -20.86996 -18.88733 -18.10915 -17.54156 -17.38134 -16.87545 -16.49430 -15.97658 -15.88406 -15.49392 -15.04094 -14.72060 -14.69151 -14.32432 -14.11835 -13.80940 -13.46334 -13.25982 -12.92301 -12.90350 -12.69345 -12.54111 -12.51212 -12.34777 -11.80831 -11.79385 -11.70196 -11.31395 -10.90817 -10.73681 -10.55388 -10.11799 -9.63673 -8.73060 -8.21205 -6.31674 0.85769 1.40438 1.41758 1.42173 1.49770 1.62163 2.12253 2.40329 3.12553 3.47879 3.54582 3.73226 3.77370 3.86609 4.12657 4.14093 4.22953 4.25441 4.27175 4.49085 4.63807 4.65687 4.67544 4.78851 4.81544 4.87042 4.99298 5.09715 5.16268 5.41984 5.47050 5.66340 5.81127 6.07845 6.21442 6.47758 6.51719 6.84072 7.22947 7.37542 8.89327 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.022092 B = 0.003372 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.141358 B = 8301.488911 C = 8929.227528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.005 3.995 3 Si 0.959 3.041 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.546 4.546 8 H 0.056 0.944 9 C 0.029 3.971 10 C -0.120 4.120 11 C 0.079 3.921 12 H 0.109 0.891 13 N -0.831 5.831 14 C 0.528 3.472 15 O -0.572 6.572 16 N -0.719 5.719 17 C 0.134 3.866 18 C -0.098 4.098 19 H 0.101 0.899 20 C -0.118 4.118 21 C -0.056 4.056 22 S -0.356 6.356 23 C -0.060 4.060 24 H 0.264 0.736 25 H 0.001 0.999 26 H 0.002 0.998 27 H 0.068 0.932 28 H 0.044 0.956 29 H 0.344 0.656 30 H 0.352 0.648 31 H 0.413 0.587 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.108 0.892 35 H 0.083 0.917 36 H 0.116 0.884 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.623 -16.564 -8.746 21.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.193 4.193 3 Si 0.783 3.217 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.584 4.584 8 H 0.074 0.926 9 C -0.008 4.008 10 C -0.160 4.160 11 C -0.036 4.036 12 H 0.127 0.873 13 N -0.363 5.363 14 C 0.314 3.686 15 O -0.450 6.450 16 N -0.372 5.372 17 C 0.010 3.990 18 C -0.118 4.118 19 H 0.120 0.880 20 C -0.157 4.157 21 C -0.204 4.204 22 S -0.131 6.131 23 C -0.208 4.208 24 H 0.073 0.927 25 H 0.020 0.980 26 H 0.020 0.980 27 H 0.086 0.914 28 H 0.063 0.937 29 H 0.156 0.844 30 H 0.167 0.833 31 H 0.249 0.751 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.126 0.874 35 H 0.102 0.898 36 H 0.134 0.866 37 H 0.121 0.879 38 H 0.110 0.890 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 9.966 -18.196 -9.283 22.728 hybrid contribution 0.719 2.754 0.849 2.970 sum 10.685 -15.442 -8.434 20.585 Atomic orbital electron populations 1.70057 1.07518 1.27825 1.51290 1.25871 0.95720 1.02995 0.94754 0.85600 0.78372 0.78625 0.79055 1.19147 1.20932 1.19618 1.21614 0.93398 0.92474 1.50942 0.92605 1.18969 0.94069 0.92045 0.95696 1.22124 0.98744 0.93648 1.01474 1.21428 0.94828 0.91405 0.95925 0.87297 1.58767 1.18419 1.55610 1.03461 1.20674 0.80845 0.84052 0.83025 1.90629 1.61367 1.54336 1.38708 1.45884 1.46605 1.35270 1.09462 1.21348 0.92610 0.89400 0.95682 1.22210 0.94235 1.01764 0.93566 0.88029 1.22540 0.99410 0.98971 0.94768 1.24321 0.91770 1.06704 0.97570 1.87922 1.11656 1.69930 1.43570 1.24127 0.99876 1.00961 0.95826 0.92744 0.98044 0.97955 0.91368 0.93735 0.84350 0.83292 0.75062 0.91235 0.91708 0.87391 0.89819 0.86587 0.87937 0.88981 0.87852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.96 13.29 21.45 0.28 -53.67 16 2 C 0.01 0.28 5.46 84.66 0.46 0.75 16 3 Si 0.96 42.80 29.54 68.60 2.03 44.82 16 4 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.55 -29.53 9.11 25.60 0.23 -29.30 16 8 H 0.06 2.92 7.74 -2.91 -0.02 2.90 16 9 C 0.03 1.41 4.74 29.85 0.14 1.55 16 10 C -0.12 -4.50 4.78 30.59 0.15 -4.35 16 11 C 0.08 2.55 3.21 44.17 0.14 2.69 16 12 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 13 N -0.83 -28.09 8.94 -171.81 -1.54 -29.63 16 14 C 0.53 16.00 7.08 87.66 0.62 16.62 16 15 O -0.57 -21.23 16.25 -3.04 -0.05 -21.28 16 16 N -0.72 -15.44 5.38 -463.04 -2.49 -17.93 16 17 C 0.13 2.36 4.97 86.38 0.43 2.79 16 18 C -0.10 -1.21 2.62 -10.07 -0.03 -1.24 16 19 H 0.10 1.14 8.14 -2.39 -0.02 1.13 16 20 C -0.12 -1.14 5.78 31.61 0.18 -0.95 16 21 C -0.06 -0.59 7.38 72.71 0.54 -0.06 16 22 S -0.36 -6.31 23.26 -56.49 -1.31 -7.62 16 23 C -0.06 -0.89 6.45 72.42 0.47 -0.42 16 24 H 0.26 14.56 8.31 -92.70 -0.77 13.79 16 25 H 0.00 0.06 6.87 -2.38 -0.02 0.05 16 26 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 27 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 28 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.34 11.87 8.58 -89.69 -0.77 11.10 16 30 H 0.35 12.11 7.55 -89.69 -0.68 11.44 16 31 H 0.41 7.12 8.30 -92.71 -0.77 6.35 16 32 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.06 1.26 8.01 -2.38 -0.02 1.24 16 34 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.08 0.85 8.11 -2.39 -0.02 0.83 16 36 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 38 H 0.09 1.47 7.80 -2.39 -0.02 1.45 16 39 H 0.10 1.42 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -66.95 332.23 -0.90 -67.85 By element: Atomic # 1 Polarization: 30.52 SS G_CDS: -1.16 Total: 29.36 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: 3.33 Total: -11.91 kcal Atomic # 7 Polarization: -97.49 SS G_CDS: -3.74 Total: -101.23 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: -0.05 Total: -21.28 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.82 kcal Atomic # 16 Polarization: -6.31 SS G_CDS: -1.31 Total: -7.62 kcal Total: -66.95 -0.90 -67.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691603866.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.797 kcal (2) G-P(sol) polarization free energy of solvation -66.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds