Wall clock time and date at job start Mon Mar 30 2020 04:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34768 * 119.99926 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00307 * 359.97438 * 11 10 9 13 13 C 1.50703 * 120.00049 * 179.97438 * 11 10 9 14 14 N 1.46906 * 109.47100 * 179.97438 * 13 11 10 15 15 C 1.46905 * 110.99623 * 179.97438 * 14 13 11 16 16 H 1.08995 * 110.28084 * 327.12064 * 15 14 13 17 17 C 1.53074 * 110.31867 * 205.00169 * 15 14 13 18 18 C 1.44828 * 115.41402 * 146.55518 * 17 15 14 19 19 C 1.55241 * 110.45084 * 64.06365 * 18 17 15 20 20 S 1.79266 * 109.68985 * 286.73090 * 19 18 17 21 21 C 1.82331 * 106.80250 * 88.65655 * 20 19 18 22 22 C 1.51409 * 110.32335 * 89.41937 * 15 14 13 23 23 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 25 25 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 26 26 H 0.96997 * 119.99786 * 359.97438 * 10 9 7 27 27 H 1.08995 * 109.47383 * 299.99856 * 13 11 10 28 28 H 1.09001 * 109.46944 * 60.00013 * 13 11 10 29 29 H 1.00896 * 110.99863 * 303.94952 * 14 13 11 30 30 H 1.08998 * 108.29264 * 268.08834 * 17 15 14 31 31 H 1.08999 * 108.30073 * 25.19926 * 17 15 14 32 32 H 1.08999 * 109.30186 * 184.36144 * 18 17 15 33 33 H 1.08991 * 109.30474 * 303.95946 * 18 17 15 34 34 H 1.08996 * 109.43921 * 46.79783 * 19 18 17 35 35 H 1.09000 * 109.43558 * 166.66489 * 19 18 17 36 36 H 1.09003 * 109.18246 * 79.46014 * 21 20 19 37 37 H 1.08996 * 109.18557 * 198.70305 * 21 20 19 38 38 H 1.09006 * 109.53013 * 344.19524 * 22 15 14 39 39 H 1.08994 * 109.52877 * 104.41117 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 1.7538 -4.8833 -0.0125 12 8 0.5615 -5.1050 -0.0076 13 6 2.7331 -6.0287 -0.0193 14 7 1.9986 -7.3010 -0.0180 15 6 2.9232 -8.4426 -0.0251 16 1 3.8253 -8.1947 -0.5844 17 6 2.2436 -9.6732 -0.6308 18 6 3.1130 -10.5594 -1.3767 19 6 4.1818 -11.1851 -0.4406 20 16 5.4056 -9.9482 -0.0095 21 6 4.7948 -9.1009 1.4850 22 6 3.2727 -8.8450 1.3920 23 1 -0.4850 -0.8400 0.0004 24 1 0.6281 -2.5591 0.8866 25 1 0.6207 -2.5548 -0.8933 26 1 3.1567 -3.4354 -0.0154 27 1 3.3558 -5.9692 -0.9119 28 1 3.3638 -5.9728 0.8680 29 1 1.3660 -7.3525 0.7663 30 1 1.7857 -10.2436 0.1773 31 1 1.4519 -9.3332 -1.2984 32 1 2.5176 -11.3542 -1.8259 33 1 3.6132 -9.9951 -2.1636 34 1 3.7004 -11.5505 0.4664 35 1 4.6696 -12.0154 -0.9512 36 1 5.0012 -9.7206 2.3577 37 1 5.3123 -8.1477 1.5932 38 1 2.9953 -8.0440 2.0773 39 1 2.7335 -9.7547 1.6559 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692437812.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:08 Heat of formation + Delta-G solvation = -48.869292 kcal Electronic energy + Delta-G solvation = -18745.419255 eV Core-core repulsion = 15813.467352 eV Total energy + Delta-G solvation = -2931.951903 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.33615 -38.30309 -34.72314 -34.26136 -32.53599 -32.32807 -29.13153 -27.34633 -25.73187 -24.17677 -22.51354 -22.09255 -20.96149 -19.71278 -17.53826 -16.92012 -16.10226 -15.85291 -15.75334 -15.20153 -14.96293 -14.65919 -14.25235 -13.87979 -13.79992 -13.60815 -13.07614 -12.91616 -12.61441 -12.34382 -12.24690 -12.02511 -11.67862 -11.46934 -11.38918 -11.03215 -11.00558 -10.77393 -10.67315 -10.18359 -9.99464 -9.21192 -8.79243 -8.69105 -8.42944 -8.00127 -7.87653 -6.52462 -4.26101 1.33468 2.33785 3.27831 3.36739 3.40528 3.55988 3.66829 4.25674 4.29807 4.42870 4.45826 4.59014 4.69179 4.70915 4.83563 5.13173 5.21967 5.26141 5.27802 5.32308 5.38728 5.42945 5.48658 5.53588 5.65860 5.78086 5.81893 6.05056 6.09619 6.88211 7.02687 7.21406 7.31152 7.35472 7.65661 8.26258 8.46188 8.70840 8.98244 9.47920 10.87806 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.037706 B = 0.003105 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.413371 B = 9016.580355 C = 9418.534232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 1.079 2.921 4 H -0.286 1.286 5 H -0.287 1.287 6 H -0.282 1.282 7 C -0.623 4.623 8 H 0.057 0.943 9 C 0.241 3.759 10 N -0.709 5.709 11 C 0.496 3.504 12 O -0.546 6.546 13 C 0.042 3.958 14 N -0.663 5.663 15 C 0.078 3.922 16 H 0.107 0.893 17 C -0.122 4.122 18 C -0.107 4.107 19 C -0.094 4.094 20 S -0.257 6.257 21 C -0.081 4.081 22 C -0.157 4.157 23 H 0.273 0.727 24 H 0.015 0.985 25 H 0.017 0.983 26 H 0.392 0.608 27 H 0.098 0.902 28 H 0.053 0.947 29 H 0.349 0.651 30 H 0.055 0.945 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.102 0.898 36 H 0.081 0.919 37 H 0.103 0.897 38 H 0.075 0.925 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.827 -21.978 1.427 24.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.184 4.184 3 Si 0.906 3.094 4 H -0.213 1.213 5 H -0.213 1.213 6 H -0.208 1.208 7 C -0.662 4.662 8 H 0.076 0.924 9 C 0.119 3.881 10 N -0.359 5.359 11 C 0.281 3.719 12 O -0.424 6.424 13 C -0.090 4.090 14 N -0.294 5.294 15 C -0.032 4.032 16 H 0.125 0.875 17 C -0.160 4.160 18 C -0.147 4.147 19 C -0.242 4.242 20 S -0.030 6.030 21 C -0.230 4.230 22 C -0.198 4.198 23 H 0.083 0.917 24 H 0.033 0.967 25 H 0.035 0.965 26 H 0.225 0.775 27 H 0.116 0.884 28 H 0.071 0.929 29 H 0.169 0.831 30 H 0.073 0.927 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.120 0.880 36 H 0.099 0.901 37 H 0.121 0.879 38 H 0.094 0.906 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 10.565 -20.279 0.241 22.867 hybrid contribution -0.127 -1.887 1.717 2.554 sum 10.438 -22.165 1.958 24.578 Atomic orbital electron populations 1.70729 1.06887 1.31097 1.45006 1.25888 0.96430 1.02770 0.93293 0.83407 0.74536 0.74600 0.76850 1.21295 1.21332 1.20767 1.22095 0.94590 0.91517 1.57966 0.92437 1.19152 0.89015 0.83515 0.96400 1.46264 1.11019 1.05805 1.72767 1.20441 0.89605 0.84276 0.77627 1.90657 1.16750 1.84762 1.50209 1.21838 0.95556 0.89271 1.02352 1.60168 1.18529 0.99671 1.51051 1.21718 0.96299 0.90950 0.94280 0.87495 1.20331 0.99675 0.95167 1.00859 1.20603 0.96799 0.99098 0.98214 1.23668 0.98888 0.98891 1.02767 1.86276 1.33793 1.45124 1.37810 1.23930 0.98864 1.02997 0.97205 1.22956 0.94368 1.02864 0.99610 0.91658 0.96667 0.96519 0.77493 0.88372 0.92918 0.83087 0.92684 0.90201 0.90788 0.90528 0.89986 0.87959 0.90068 0.87867 0.90612 0.90904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.47 13.65 55.43 0.76 -26.71 16 2 C 0.02 0.62 5.46 -17.82 -0.10 0.52 16 3 Si 1.08 24.49 29.90 -169.99 -5.08 19.41 16 4 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.62 -17.21 9.28 -34.44 -0.32 -17.53 16 8 H 0.06 1.50 7.60 -52.49 -0.40 1.10 16 9 C 0.24 6.39 4.74 -5.19 -0.02 6.37 16 10 N -0.71 -14.99 5.55 -61.47 -0.34 -15.33 16 11 C 0.50 9.81 7.87 -10.99 -0.09 9.72 16 12 O -0.55 -13.04 16.20 5.56 0.09 -12.95 16 13 C 0.04 0.59 6.01 -4.97 -0.03 0.56 16 14 N -0.66 -8.77 5.76 -108.80 -0.63 -9.40 16 15 C 0.08 0.79 2.21 -68.48 -0.15 0.64 16 16 H 0.11 1.14 5.92 -51.93 -0.31 0.84 16 17 C -0.12 -1.12 4.71 -30.52 -0.14 -1.26 16 18 C -0.11 -0.82 5.48 -29.37 -0.16 -0.98 16 19 C -0.09 -0.67 5.94 38.34 0.23 -0.44 16 20 S -0.26 -2.30 20.08 -107.50 -2.16 -4.46 16 21 C -0.08 -0.65 6.60 38.01 0.25 -0.39 16 22 C -0.16 -1.33 5.24 -26.68 -0.14 -1.47 16 23 H 0.27 8.42 7.22 -40.82 -0.29 8.12 16 24 H 0.02 0.44 8.01 -51.93 -0.42 0.03 16 25 H 0.02 0.49 8.00 -51.93 -0.42 0.07 16 26 H 0.39 7.15 8.32 -40.82 -0.34 6.81 16 27 H 0.10 1.25 8.07 -51.93 -0.42 0.83 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.35 4.81 7.98 -39.29 -0.31 4.49 16 30 H 0.05 0.46 6.70 -51.93 -0.35 0.12 16 31 H 0.08 0.86 7.96 -51.93 -0.41 0.45 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.65 8.09 -51.93 -0.42 0.23 16 34 H 0.08 0.55 7.89 -51.76 -0.41 0.14 16 35 H 0.10 0.63 8.14 -51.76 -0.42 0.21 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.08 0.67 7.74 -51.93 -0.40 0.27 16 39 H 0.07 0.57 6.55 -51.93 -0.34 0.23 16 LS Contribution 322.75 15.07 4.86 4.86 Total: -1.00 -32.37 322.75 -9.32 -41.69 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -6.14 Total: 7.14 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -0.68 Total: -4.26 kcal Atomic # 7 Polarization: -51.23 SS G_CDS: -0.21 Total: -51.44 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: 0.09 Total: -12.95 kcal Atomic # 14 Polarization: 24.49 SS G_CDS: -5.08 Total: 19.41 kcal Atomic # 16 Polarization: -2.30 SS G_CDS: -2.16 Total: -4.46 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.37 -9.32 -41.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692437812.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.177 kcal (2) G-P(sol) polarization free energy of solvation -32.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds