Wall clock time and date at job start Mon Mar 30 2020 04:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34768 * 119.99926 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00307 * 359.97438 * 11 10 9 13 13 C 1.50703 * 120.00049 * 179.97438 * 11 10 9 14 14 N 1.46906 * 109.47100 * 179.97438 * 13 11 10 15 15 C 1.46905 * 110.99623 * 179.97438 * 14 13 11 16 16 H 1.08995 * 110.28084 * 327.12064 * 15 14 13 17 17 C 1.53074 * 110.31867 * 205.00169 * 15 14 13 18 18 C 1.44828 * 115.41402 * 146.55518 * 17 15 14 19 19 C 1.55241 * 110.45084 * 64.06365 * 18 17 15 20 20 S 1.79266 * 109.68985 * 286.73090 * 19 18 17 21 21 C 1.82331 * 106.80250 * 88.65655 * 20 19 18 22 22 C 1.51409 * 110.32335 * 89.41937 * 15 14 13 23 23 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 25 25 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 26 26 H 0.96997 * 119.99786 * 359.97438 * 10 9 7 27 27 H 1.08995 * 109.47383 * 299.99856 * 13 11 10 28 28 H 1.09001 * 109.46944 * 60.00013 * 13 11 10 29 29 H 1.00896 * 110.99863 * 303.94952 * 14 13 11 30 30 H 1.08998 * 108.29264 * 268.08834 * 17 15 14 31 31 H 1.08999 * 108.30073 * 25.19926 * 17 15 14 32 32 H 1.08999 * 109.30186 * 184.36144 * 18 17 15 33 33 H 1.08991 * 109.30474 * 303.95946 * 18 17 15 34 34 H 1.08996 * 109.43921 * 46.79783 * 19 18 17 35 35 H 1.09000 * 109.43558 * 166.66489 * 19 18 17 36 36 H 1.09003 * 109.18246 * 79.46014 * 21 20 19 37 37 H 1.08996 * 109.18557 * 198.70305 * 21 20 19 38 38 H 1.09006 * 109.53013 * 344.19524 * 22 15 14 39 39 H 1.08994 * 109.52877 * 104.41117 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 1.7538 -4.8833 -0.0125 12 8 0.5615 -5.1050 -0.0076 13 6 2.7331 -6.0287 -0.0193 14 7 1.9986 -7.3010 -0.0180 15 6 2.9232 -8.4426 -0.0251 16 1 3.8253 -8.1947 -0.5844 17 6 2.2436 -9.6732 -0.6308 18 6 3.1130 -10.5594 -1.3767 19 6 4.1818 -11.1851 -0.4406 20 16 5.4056 -9.9482 -0.0095 21 6 4.7948 -9.1009 1.4850 22 6 3.2727 -8.8450 1.3920 23 1 -0.4850 -0.8400 0.0004 24 1 0.6281 -2.5591 0.8866 25 1 0.6207 -2.5548 -0.8933 26 1 3.1567 -3.4354 -0.0154 27 1 3.3558 -5.9692 -0.9119 28 1 3.3638 -5.9728 0.8680 29 1 1.3660 -7.3525 0.7663 30 1 1.7857 -10.2436 0.1773 31 1 1.4519 -9.3332 -1.2984 32 1 2.5176 -11.3542 -1.8259 33 1 3.6132 -9.9951 -2.1636 34 1 3.7004 -11.5505 0.4664 35 1 4.6696 -12.0154 -0.9512 36 1 5.0012 -9.7206 2.3577 37 1 5.3123 -8.1477 1.5932 38 1 2.9953 -8.0440 2.0773 39 1 2.7335 -9.7547 1.6559 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692437812.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:06 Heat of formation + Delta-G solvation = -72.287236 kcal Electronic energy + Delta-G solvation = -18746.434733 eV Core-core repulsion = 15813.467352 eV Total energy + Delta-G solvation = -2932.967381 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.75060 -39.37965 -36.46784 -35.39805 -34.45245 -33.22736 -30.17371 -28.87687 -26.98619 -25.28881 -24.33605 -22.83126 -21.82538 -21.30967 -19.40868 -18.07566 -17.28309 -17.16371 -16.72406 -16.40817 -15.88962 -15.70288 -15.63484 -15.44786 -14.72006 -14.60056 -14.56782 -14.25327 -14.03621 -13.69648 -13.47274 -13.10913 -12.98423 -12.74883 -12.55814 -12.19997 -12.06816 -11.89513 -11.77308 -11.36563 -11.02902 -10.78445 -10.77140 -10.62044 -9.97890 -9.41009 -8.80661 -8.55107 -6.56259 0.72856 1.55549 1.64335 1.67805 1.73973 1.82296 2.25955 2.56449 3.07452 3.17243 3.61441 3.78228 3.83079 3.89632 4.01936 4.11927 4.18869 4.30061 4.39495 4.53723 4.57714 4.72126 4.74748 4.77908 4.82259 4.94489 4.94791 5.04922 5.15311 5.34096 5.37858 5.43511 5.53530 5.98219 6.08292 6.30079 6.32570 6.80705 7.23416 7.41206 8.58802 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.037706 B = 0.003105 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.413371 B = 9016.580355 C = 9418.534232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.034 4.034 3 Si 1.132 2.868 4 H -0.270 1.270 5 H -0.260 1.260 6 H -0.285 1.285 7 C -0.630 4.630 8 H 0.077 0.923 9 C 0.254 3.746 10 N -0.705 5.705 11 C 0.493 3.507 12 O -0.591 6.591 13 C 0.060 3.940 14 N -0.679 5.679 15 C 0.081 3.919 16 H 0.105 0.895 17 C -0.118 4.118 18 C -0.104 4.104 19 C -0.084 4.084 20 S -0.294 6.294 21 C -0.073 4.073 22 C -0.151 4.151 23 H 0.254 0.746 24 H -0.017 1.017 25 H -0.019 1.019 26 H 0.410 0.590 27 H 0.117 0.883 28 H 0.084 0.916 29 H 0.344 0.656 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.089 0.911 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.114 0.886 36 H 0.092 0.908 37 H 0.105 0.895 38 H 0.074 0.926 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.282 -22.788 1.824 26.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.232 4.232 3 Si 0.952 3.048 4 H -0.195 1.195 5 H -0.184 1.184 6 H -0.211 1.211 7 C -0.667 4.667 8 H 0.095 0.905 9 C 0.130 3.870 10 N -0.356 5.356 11 C 0.280 3.720 12 O -0.472 6.472 13 C -0.072 4.072 14 N -0.311 5.311 15 C -0.029 4.029 16 H 0.122 0.878 17 C -0.156 4.156 18 C -0.144 4.144 19 C -0.232 4.232 20 S -0.067 6.067 21 C -0.221 4.221 22 C -0.191 4.191 23 H 0.063 0.937 24 H 0.001 0.999 25 H -0.001 1.001 26 H 0.245 0.755 27 H 0.135 0.865 28 H 0.101 0.899 29 H 0.164 0.836 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.107 0.893 33 H 0.085 0.915 34 H 0.109 0.891 35 H 0.132 0.868 36 H 0.111 0.889 37 H 0.124 0.876 38 H 0.092 0.908 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 13.073 -21.144 0.638 24.868 hybrid contribution -0.930 -1.739 1.578 2.525 sum 12.144 -22.883 2.215 26.000 Atomic orbital electron populations 1.70878 1.08305 1.29959 1.47525 1.27668 0.96350 1.07233 0.91951 0.82759 0.74174 0.69940 0.77963 1.19546 1.18414 1.21116 1.22466 0.95612 0.91742 1.56886 0.90518 1.18651 0.89401 0.85675 0.93271 1.46041 1.11046 1.05294 1.73228 1.21515 0.90043 0.84881 0.75520 1.90636 1.19310 1.85390 1.51870 1.21735 0.93891 0.86992 1.04595 1.60181 1.19496 1.00203 1.51225 1.21729 0.95501 0.90083 0.95566 0.87764 1.20316 0.99366 0.95070 1.00830 1.20558 0.96802 0.99143 0.97883 1.23668 0.98106 0.98351 1.03059 1.86432 1.35277 1.46192 1.38751 1.23904 0.98137 1.03209 0.96894 1.22852 0.94953 1.03146 0.98180 0.93687 0.99911 1.00102 0.75470 0.86470 0.89859 0.83622 0.91807 0.92209 0.89292 0.91508 0.89081 0.86782 0.88893 0.87646 0.90772 0.90072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.12 13.65 21.45 0.29 -57.83 16 2 C -0.03 -1.90 5.46 84.65 0.46 -1.44 16 3 Si 1.13 48.08 29.90 68.60 2.05 50.13 16 4 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 5 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 6 H -0.29 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.63 -34.71 9.28 25.60 0.24 -34.47 16 8 H 0.08 3.86 7.60 -2.91 -0.02 3.84 16 9 C 0.25 13.91 4.74 85.64 0.41 14.32 16 10 N -0.71 -29.75 5.55 -466.79 -2.59 -32.34 16 11 C 0.49 19.46 7.87 87.66 0.69 20.15 16 12 O -0.59 -29.09 16.20 -3.03 -0.05 -29.14 16 13 C 0.06 1.56 6.01 85.56 0.51 2.08 16 14 N -0.68 -17.23 5.76 -498.14 -2.87 -20.10 16 15 C 0.08 1.49 2.21 44.42 0.10 1.59 16 16 H 0.10 2.02 5.92 -2.39 -0.01 2.00 16 17 C -0.12 -1.97 4.71 28.14 0.13 -1.84 16 18 C -0.10 -1.39 5.48 28.89 0.16 -1.23 16 19 C -0.08 -1.00 5.94 72.75 0.43 -0.56 16 20 S -0.29 -4.66 20.08 -56.49 -1.13 -5.80 16 21 C -0.07 -0.97 6.60 72.53 0.48 -0.49 16 22 C -0.15 -2.19 5.24 30.63 0.16 -2.03 16 23 H 0.25 16.46 7.22 -92.71 -0.67 15.79 16 24 H -0.02 -1.03 8.01 -2.39 -0.02 -1.05 16 25 H -0.02 -1.16 8.00 -2.39 -0.02 -1.18 16 26 H 0.41 14.30 8.32 -92.71 -0.77 13.52 16 27 H 0.12 2.68 8.07 -2.39 -0.02 2.67 16 28 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.34 9.27 7.98 -89.70 -0.72 8.56 16 30 H 0.06 0.95 6.70 -2.39 -0.02 0.93 16 31 H 0.06 1.25 7.96 -2.39 -0.02 1.23 16 32 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.07 1.04 8.09 -2.39 -0.02 1.02 16 34 H 0.09 0.94 7.89 -2.50 -0.02 0.92 16 35 H 0.11 1.11 8.14 -2.50 -0.02 1.09 16 36 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.07 1.14 7.74 -2.38 -0.02 1.12 16 39 H 0.08 1.06 6.55 -2.39 -0.02 1.05 16 Total: -1.00 -72.26 322.75 -0.86 -73.13 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: -0.34 Total: 25.89 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: 3.77 Total: -3.93 kcal Atomic # 7 Polarization: -105.11 SS G_CDS: -5.17 Total: -110.27 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -0.05 Total: -29.14 kcal Atomic # 14 Polarization: 48.08 SS G_CDS: 2.05 Total: 50.13 kcal Atomic # 16 Polarization: -4.66 SS G_CDS: -1.13 Total: -5.80 kcal Total: -72.26 -0.86 -73.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692437812.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.838 kcal (2) G-P(sol) polarization free energy of solvation -72.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds