Wall clock time and date at job start Mon Mar 30 2020 04:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00108 * 2 1 4 4 H 1.48493 * 109.47185 * 240.00118 * 3 2 1 5 5 H 1.48499 * 109.46922 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46815 * 119.99794 * 3 2 1 7 7 C 1.37882 * 119.99910 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99867 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99957 * 359.97438 * 7 2 1 10 10 O 1.42897 * 109.47033 * 179.97438 * 9 7 2 11 11 C 1.42900 * 114.00054 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47071 * 180.02562 * 11 10 9 13 13 C 1.52998 * 109.47187 * 180.02562 * 12 11 10 14 14 H 1.09001 * 109.47077 * 55.00090 * 13 12 11 15 15 C 1.50702 * 109.47056 * 294.99916 * 13 12 11 16 16 O 1.20821 * 120.00185 * 240.00211 * 15 13 12 17 17 O 1.34228 * 119.99885 * 60.00012 * 15 13 12 18 18 C 1.53002 * 109.47541 * 175.00036 * 13 12 11 19 19 C 1.53177 * 109.53875 * 300.00013 * 18 13 12 20 20 C 1.53096 * 109.16164 * 183.14936 * 19 18 13 21 21 O 1.42908 * 109.41214 * 57.60571 * 20 19 18 22 22 C 1.42897 * 114.09789 * 298.84248 * 21 20 19 23 23 C 1.53090 * 109.41529 * 61.15937 * 22 21 20 24 24 H 0.97002 * 119.99906 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47097 * 59.99978 * 9 7 2 26 26 H 1.08998 * 109.47260 * 299.99965 * 9 7 2 27 27 H 1.08999 * 109.46892 * 60.00187 * 11 10 9 28 28 H 1.08997 * 109.47184 * 299.99784 * 11 10 9 29 29 H 1.08999 * 109.47226 * 60.00249 * 12 11 10 30 30 H 1.09006 * 109.47236 * 300.00263 * 12 11 10 31 31 H 0.96707 * 117.00217 * 180.02562 * 17 15 13 32 32 H 1.09002 * 109.61364 * 60.21656 * 18 13 12 33 33 H 1.09003 * 109.52410 * 63.24757 * 19 18 13 34 34 H 1.08994 * 109.57348 * 303.08372 * 19 18 13 35 35 H 1.08993 * 109.48033 * 177.59323 * 20 19 18 36 36 H 1.09001 * 109.48095 * 297.62604 * 20 19 18 37 37 H 1.09002 * 109.48246 * 301.17405 * 22 21 20 38 38 H 1.09006 * 109.47919 * 181.14281 * 22 21 20 39 39 H 1.09002 * 109.52149 * 182.47952 * 23 22 21 40 40 H 1.09007 * 109.52293 * 62.29456 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 2.1796 -3.5853 -0.0017 11 6 1.5651 -4.8754 -0.0013 12 6 2.6480 -5.9562 -0.0020 13 6 1.9901 -7.3375 -0.0021 14 1 1.3014 -7.4118 -0.8437 15 6 1.2325 -7.5331 1.2859 16 8 1.5247 -8.4418 2.0266 17 8 0.2330 -6.6979 1.6101 18 6 3.0680 -8.4159 -0.1286 19 6 3.8391 -8.2186 -1.4373 20 6 4.8619 -9.3471 -1.5930 21 8 4.1874 -10.6066 -1.5645 22 6 3.4881 -10.8665 -0.3457 23 6 2.4102 -9.7991 -0.1400 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 0.9440 -4.9823 -0.8906 28 1 0.9460 -4.9826 0.8894 29 1 3.2688 -5.8492 0.8876 30 1 3.2676 -5.8492 -0.8924 31 1 -0.2234 -6.8631 2.4465 32 1 3.7560 -8.3462 0.7141 33 1 4.3560 -7.2592 -1.4144 34 1 3.1445 -8.2382 -2.2769 35 1 5.3842 -9.2357 -2.5431 36 1 5.5811 -9.3013 -0.7752 37 1 4.1893 -10.8406 0.4884 38 1 3.0207 -11.8500 -0.3975 39 1 1.9050 -9.9701 0.8107 40 1 1.6859 -9.8513 -0.9529 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000696827645.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:34 Heat of formation + Delta-G solvation = -207.286110 kcal Electronic energy + Delta-G solvation = -21435.507836 eV Core-core repulsion = 18021.640842 eV Total energy + Delta-G solvation = -3413.866994 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.89245 -39.26355 -36.98802 -36.37360 -35.39558 -32.83250 -31.84192 -31.23375 -28.02939 -26.46403 -24.44922 -23.76686 -22.42977 -22.10914 -20.68461 -20.04246 -18.12851 -17.08118 -16.50002 -16.31210 -16.16368 -15.87099 -15.32567 -14.87915 -14.78764 -14.40361 -14.21282 -13.99708 -13.52468 -13.25658 -12.69707 -12.50514 -12.34189 -12.08045 -11.76121 -11.67447 -11.41180 -11.18778 -11.04671 -10.92994 -10.84767 -10.62488 -10.48672 -10.39035 -10.15797 -10.01472 -9.67142 -9.12574 -8.80567 -8.17016 -6.11938 -4.13970 2.12337 2.95784 3.31245 3.33970 3.37705 3.70347 4.15637 4.36839 4.48513 4.59105 4.78224 4.86201 4.98845 5.05876 5.09383 5.20034 5.24312 5.29719 5.38150 5.50648 5.58852 5.60409 5.65017 5.69220 5.82965 5.91635 5.98777 6.05294 6.13123 6.33356 6.48134 6.51514 7.01110 7.10911 7.42662 7.77938 7.85331 8.14322 8.57206 8.99224 9.50915 10.99487 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.028942 B = 0.003510 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.233100 B = 7975.518172 C = 8708.526873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.908 3.092 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.517 4.517 8 H 0.066 0.934 9 C 0.197 3.803 10 O -0.399 6.399 11 C 0.053 3.947 12 C -0.112 4.112 13 C -0.073 4.073 14 H 0.111 0.889 15 C 0.486 3.514 16 O -0.518 6.518 17 O -0.503 6.503 18 C -0.071 4.071 19 C -0.155 4.155 20 C 0.062 3.938 21 O -0.387 6.387 22 C 0.064 3.936 23 C -0.164 4.164 24 H 0.265 0.735 25 H 0.005 0.995 26 H 0.005 0.995 27 H 0.036 0.964 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.406 0.594 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.050 0.950 37 H 0.050 0.950 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.177 -19.838 -0.483 20.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.555 4.555 8 H 0.084 0.916 9 C 0.123 3.877 10 O -0.320 6.320 11 C -0.024 4.024 12 C -0.149 4.149 13 C -0.092 4.092 14 H 0.129 0.871 15 C 0.329 3.671 16 O -0.408 6.408 17 O -0.315 6.315 18 C -0.089 4.089 19 C -0.193 4.193 20 C -0.015 4.015 21 O -0.306 6.306 22 C -0.013 4.013 23 C -0.201 4.201 24 H 0.074 0.926 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.054 0.946 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.107 0.893 31 H 0.265 0.735 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.113 0.887 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.110 0.890 39 H 0.114 0.886 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.497 -19.977 -0.807 20.493 hybrid contribution -0.412 1.034 0.818 1.382 sum 4.085 -18.943 0.011 19.379 Atomic orbital electron populations 1.69956 1.06103 1.27277 1.50418 1.24952 0.94983 0.99424 0.95116 0.86391 0.79316 0.81893 0.78848 1.19987 1.21145 1.20017 1.21038 0.94031 0.89439 1.51030 0.91616 1.20173 0.88688 0.83394 0.95429 1.87804 1.35769 1.13071 1.95314 1.22473 0.94252 0.85128 1.00561 1.21540 0.98911 0.90134 1.04336 1.21134 0.97038 0.97668 0.93409 0.87136 1.23504 0.77549 0.78023 0.87985 1.90626 1.66037 1.32003 1.52095 1.84708 1.46483 1.55213 1.45095 1.21037 0.95972 0.93189 0.98743 1.22350 0.99365 0.99973 0.97567 1.22575 0.93612 0.83022 1.02267 1.87915 1.68329 1.36665 1.37661 1.22549 0.93519 0.98482 0.86749 1.22504 0.99032 0.94399 1.04158 0.92583 0.97720 0.97674 0.94567 0.92245 0.90829 0.89309 0.73489 0.89971 0.89735 0.90546 0.88716 0.93133 0.93174 0.89037 0.88573 0.91398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.84 13.29 55.43 0.74 -26.11 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 21.75 29.54 -169.99 -5.02 16.73 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -15.25 9.43 -34.44 -0.32 -15.58 16 8 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 9 C 0.20 5.43 5.69 36.00 0.20 5.64 16 10 O -0.40 -9.60 10.33 -35.23 -0.36 -9.96 16 11 C 0.05 0.96 5.58 37.16 0.21 1.17 16 12 C -0.11 -1.54 4.83 -26.73 -0.13 -1.67 16 13 C -0.07 -0.83 1.92 -91.77 -0.18 -1.01 16 14 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 15 C 0.49 6.02 7.32 36.01 0.26 6.28 16 16 O -0.52 -7.16 14.46 -18.75 -0.27 -7.43 16 17 O -0.50 -5.85 10.57 -39.25 -0.41 -6.26 16 18 C -0.07 -0.73 1.49 -90.44 -0.13 -0.86 16 19 C -0.16 -1.42 4.98 -26.59 -0.13 -1.56 16 20 C 0.06 0.55 6.84 37.21 0.25 0.81 16 21 O -0.39 -4.18 10.77 -35.23 -0.38 -4.56 16 22 C 0.06 0.60 6.84 37.20 0.25 0.85 16 23 C -0.16 -1.63 5.06 -26.60 -0.13 -1.76 16 24 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 25 H 0.00 0.14 8.14 -51.93 -0.42 -0.28 16 26 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.06 1.07 5.46 -51.93 -0.28 0.79 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.09 1.15 6.25 -51.93 -0.32 0.82 16 31 H 0.41 3.00 9.10 45.56 0.41 3.42 16 32 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 33 H 0.08 0.75 6.51 -51.93 -0.34 0.41 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.10 1.06 5.65 -51.93 -0.29 0.77 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 322.47 15.07 4.86 4.86 Total: -1.00 -33.60 322.47 -6.24 -39.84 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -5.44 Total: -0.96 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: 0.06 Total: -6.15 kcal Atomic # 7 Polarization: -26.84 SS G_CDS: 0.74 Total: -26.11 kcal Atomic # 8 Polarization: -26.78 SS G_CDS: -1.43 Total: -28.21 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.60 -6.24 -39.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696827645.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.446 kcal (2) G-P(sol) polarization free energy of solvation -33.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds