Wall clock time and date at job start Mon Mar 30 2020 04:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00108 * 2 1 4 4 H 1.48493 * 109.47185 * 240.00118 * 3 2 1 5 5 H 1.48499 * 109.46922 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46815 * 119.99794 * 3 2 1 7 7 C 1.37882 * 119.99910 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99867 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99957 * 359.97438 * 7 2 1 10 10 O 1.42897 * 109.47033 * 179.97438 * 9 7 2 11 11 C 1.42900 * 114.00054 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47071 * 180.02562 * 11 10 9 13 13 C 1.52998 * 109.47187 * 180.02562 * 12 11 10 14 14 H 1.09001 * 109.47077 * 55.00090 * 13 12 11 15 15 C 1.50702 * 109.47056 * 294.99916 * 13 12 11 16 16 O 1.20821 * 120.00185 * 240.00211 * 15 13 12 17 17 O 1.34228 * 119.99885 * 60.00012 * 15 13 12 18 18 C 1.53002 * 109.47541 * 175.00036 * 13 12 11 19 19 C 1.53177 * 109.53875 * 300.00013 * 18 13 12 20 20 C 1.53096 * 109.16164 * 183.14936 * 19 18 13 21 21 O 1.42908 * 109.41214 * 57.60571 * 20 19 18 22 22 C 1.42897 * 114.09789 * 298.84248 * 21 20 19 23 23 C 1.53090 * 109.41529 * 61.15937 * 22 21 20 24 24 H 0.97002 * 119.99906 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47097 * 59.99978 * 9 7 2 26 26 H 1.08998 * 109.47260 * 299.99965 * 9 7 2 27 27 H 1.08999 * 109.46892 * 60.00187 * 11 10 9 28 28 H 1.08997 * 109.47184 * 299.99784 * 11 10 9 29 29 H 1.08999 * 109.47226 * 60.00249 * 12 11 10 30 30 H 1.09006 * 109.47236 * 300.00263 * 12 11 10 31 31 H 0.96707 * 117.00217 * 180.02562 * 17 15 13 32 32 H 1.09002 * 109.61364 * 60.21656 * 18 13 12 33 33 H 1.09003 * 109.52410 * 63.24757 * 19 18 13 34 34 H 1.08994 * 109.57348 * 303.08372 * 19 18 13 35 35 H 1.08993 * 109.48033 * 177.59323 * 20 19 18 36 36 H 1.09001 * 109.48095 * 297.62604 * 20 19 18 37 37 H 1.09002 * 109.48246 * 301.17405 * 22 21 20 38 38 H 1.09006 * 109.47919 * 181.14281 * 22 21 20 39 39 H 1.09002 * 109.52149 * 182.47952 * 23 22 21 40 40 H 1.09007 * 109.52293 * 62.29456 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 2.1796 -3.5853 -0.0017 11 6 1.5651 -4.8754 -0.0013 12 6 2.6480 -5.9562 -0.0020 13 6 1.9901 -7.3375 -0.0021 14 1 1.3014 -7.4118 -0.8437 15 6 1.2325 -7.5331 1.2859 16 8 1.5247 -8.4418 2.0266 17 8 0.2330 -6.6979 1.6101 18 6 3.0680 -8.4159 -0.1286 19 6 3.8391 -8.2186 -1.4373 20 6 4.8619 -9.3471 -1.5930 21 8 4.1874 -10.6066 -1.5645 22 6 3.4881 -10.8665 -0.3457 23 6 2.4102 -9.7991 -0.1400 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 0.9440 -4.9823 -0.8906 28 1 0.9460 -4.9826 0.8894 29 1 3.2688 -5.8492 0.8876 30 1 3.2676 -5.8492 -0.8924 31 1 -0.2234 -6.8631 2.4465 32 1 3.7560 -8.3462 0.7141 33 1 4.3560 -7.2592 -1.4144 34 1 3.1445 -8.2382 -2.2769 35 1 5.3842 -9.2357 -2.5431 36 1 5.5811 -9.3013 -0.7752 37 1 4.1893 -10.8406 0.4884 38 1 3.0207 -11.8500 -0.3975 39 1 1.9050 -9.9701 0.8107 40 1 1.6859 -9.8513 -0.9529 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000696827645.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:34 Heat of formation + Delta-G solvation = -230.622974 kcal Electronic energy + Delta-G solvation = -21436.519798 eV Core-core repulsion = 18021.640842 eV Total energy + Delta-G solvation = -3414.878956 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.84785 -40.07186 -38.68545 -37.32288 -36.52910 -34.91925 -32.99301 -31.97257 -29.76521 -28.01916 -25.29164 -24.76495 -24.34519 -23.38014 -21.62402 -20.91215 -19.12209 -18.62911 -18.10073 -17.43661 -17.06134 -16.90932 -16.72733 -16.42419 -16.19623 -15.64110 -15.27882 -15.15619 -14.70884 -14.43646 -14.09806 -13.70478 -13.39925 -13.29842 -13.16008 -12.82831 -12.77297 -12.53945 -12.37000 -12.21157 -12.17336 -11.99329 -11.76641 -11.71744 -11.30934 -11.17753 -11.05653 -10.82319 -10.45034 -10.18899 -8.31768 -6.44619 1.13223 1.40964 1.45619 1.54048 2.07809 2.34907 2.97106 3.01978 3.02797 3.51921 3.74529 3.82078 4.03358 4.08226 4.14217 4.26962 4.33788 4.38435 4.40480 4.55332 4.62608 4.68204 4.78618 4.81937 4.84228 4.89873 4.95569 5.04039 5.11901 5.16728 5.19481 5.26789 5.37280 5.55363 5.63757 5.96300 6.29419 6.53910 6.82408 6.96730 7.27523 8.80272 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.028942 B = 0.003510 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.233100 B = 7975.518172 C = 8708.526873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.007 3.993 3 Si 0.984 3.016 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.266 1.266 7 C -0.552 4.552 8 H 0.063 0.937 9 C 0.211 3.789 10 O -0.413 6.413 11 C 0.044 3.956 12 C -0.099 4.099 13 C -0.067 4.067 14 H 0.125 0.875 15 C 0.486 3.514 16 O -0.534 6.534 17 O -0.512 6.512 18 C -0.067 4.067 19 C -0.152 4.152 20 C 0.058 3.942 21 O -0.403 6.403 22 C 0.062 3.938 23 C -0.158 4.158 24 H 0.271 0.729 25 H -0.013 1.013 26 H -0.015 1.015 27 H 0.042 0.958 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.101 0.899 31 H 0.423 0.577 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.108 0.892 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.104 0.896 39 H 0.085 0.915 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.100 -19.763 -0.888 20.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.192 4.192 3 Si 0.806 3.194 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.190 1.190 7 C -0.590 4.590 8 H 0.081 0.919 9 C 0.136 3.864 10 O -0.334 6.334 11 C -0.033 4.033 12 C -0.137 4.137 13 C -0.086 4.086 14 H 0.142 0.858 15 C 0.330 3.670 16 O -0.424 6.424 17 O -0.326 6.326 18 C -0.086 4.086 19 C -0.189 4.189 20 C -0.018 4.018 21 O -0.322 6.322 22 C -0.014 4.014 23 C -0.196 4.196 24 H 0.080 0.920 25 H 0.005 0.995 26 H 0.003 0.997 27 H 0.060 0.940 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.119 0.881 31 H 0.285 0.715 32 H 0.093 0.907 33 H 0.107 0.893 34 H 0.097 0.903 35 H 0.126 0.874 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.122 0.878 39 H 0.103 0.897 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.412 -19.928 -1.202 20.685 hybrid contribution -0.766 0.934 0.974 1.552 sum 4.646 -18.994 -0.229 19.555 Atomic orbital electron populations 1.70065 1.07779 1.28746 1.50343 1.25974 0.95969 1.03410 0.93853 0.85229 0.78095 0.76645 0.79423 1.18871 1.20035 1.19042 1.21400 0.94201 0.90903 1.52494 0.91871 1.19798 0.88551 0.84530 0.93525 1.87754 1.35727 1.14548 1.95324 1.22811 0.95971 0.83574 1.00912 1.21433 0.97660 0.89827 1.04754 1.21128 0.97467 0.96428 0.93544 0.85759 1.23663 0.77516 0.77739 0.88072 1.90626 1.66530 1.32660 1.52616 1.84656 1.46462 1.55104 1.46388 1.21010 0.95504 0.92906 0.99170 1.22337 0.99400 1.00361 0.96850 1.22708 0.93543 0.82249 1.03315 1.87897 1.68573 1.37484 1.38224 1.22620 0.93384 0.98868 0.86532 1.22429 0.99185 0.94360 1.03598 0.92011 0.99545 0.99678 0.93974 0.92212 0.91298 0.88091 0.71519 0.90652 0.89284 0.90335 0.87352 0.92584 0.92915 0.87825 0.89685 0.91131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.79 13.29 21.45 0.28 -55.51 16 2 C 0.01 0.38 5.46 84.66 0.46 0.84 16 3 Si 0.98 44.00 29.54 68.60 2.03 46.03 16 4 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 5 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 6 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 7 C -0.55 -32.91 9.43 25.60 0.24 -32.67 16 8 H 0.06 3.70 7.81 -2.91 -0.02 3.67 16 9 C 0.21 11.90 5.69 71.24 0.41 12.30 16 10 O -0.41 -20.07 10.33 -148.98 -1.54 -21.61 16 11 C 0.04 1.58 5.58 71.98 0.40 1.98 16 12 C -0.10 -2.64 4.83 30.59 0.15 -2.49 16 13 C -0.07 -1.43 1.92 -11.54 -0.02 -1.45 16 14 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 15 C 0.49 11.64 7.32 71.24 0.52 12.16 16 16 O -0.53 -14.37 14.46 21.98 0.32 -14.05 16 17 O -0.51 -11.59 10.57 -51.40 -0.54 -12.13 16 18 C -0.07 -1.28 1.49 -10.68 -0.02 -1.30 16 19 C -0.15 -2.51 4.98 30.69 0.15 -2.36 16 20 C 0.06 0.93 6.84 72.01 0.49 1.43 16 21 O -0.40 -8.03 10.77 -148.98 -1.60 -9.63 16 22 C 0.06 1.08 6.84 72.01 0.49 1.58 16 23 C -0.16 -2.94 5.06 30.68 0.16 -2.79 16 24 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 25 H -0.01 -0.77 8.14 -2.38 -0.02 -0.79 16 26 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 27 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.06 2.16 5.46 -2.39 -0.01 2.15 16 29 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.10 2.45 6.25 -2.38 -0.01 2.43 16 31 H 0.42 6.00 9.10 -74.05 -0.67 5.33 16 32 H 0.08 1.56 8.10 -2.39 -0.02 1.54 16 33 H 0.09 1.40 6.51 -2.39 -0.02 1.38 16 34 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 39 H 0.08 1.80 5.65 -2.39 -0.01 1.79 16 40 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 Total: -1.00 -71.17 322.47 2.74 -68.43 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: 0.36 Total: 11.25 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: 3.44 Total: -12.78 kcal Atomic # 7 Polarization: -55.79 SS G_CDS: 0.28 Total: -55.51 kcal Atomic # 8 Polarization: -54.05 SS G_CDS: -3.37 Total: -57.42 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -71.17 2.74 -68.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696827645.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.192 kcal (2) G-P(sol) polarization free energy of solvation -71.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -233.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds