Wall clock time and date at job start Mon Mar 30 2020 06:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81405 * 103.00134 * 2 1 4 4 C 1.52995 * 109.47093 * 180.02562 * 3 2 1 5 5 N 1.46904 * 109.46967 * 179.97438 * 4 3 2 6 6 C 1.46895 * 111.00123 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.47326 * 180.02562 * 6 5 4 8 8 O 1.21277 * 120.00330 * 359.97438 * 7 6 5 9 9 N 1.34782 * 120.00135 * 180.02562 * 7 6 5 10 10 C 1.46495 * 120.00258 * 180.02562 * 9 7 6 11 11 C 1.52992 * 109.47269 * 184.79147 * 10 9 7 12 12 C 1.50694 * 115.55114 * 294.81128 * 11 10 9 13 13 H 1.08008 * 119.99906 * 95.20873 * 12 11 10 14 14 C 1.37875 * 120.00314 * 274.92789 * 12 11 10 15 15 N 1.31509 * 119.99913 * 355.42420 * 14 12 11 16 16 Si 1.86807 * 120.00040 * 175.41703 * 14 12 11 17 17 H 1.48494 * 109.47052 * 60.00642 * 16 14 12 18 18 H 1.48500 * 109.47055 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47106 * 300.00083 * 16 14 12 20 20 C 1.53003 * 117.49834 * 80.48431 * 11 10 9 21 21 C 1.53006 * 117.49908 * 149.14426 * 11 10 9 22 22 H 1.08989 * 109.47145 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46869 * 300.00005 * 1 2 3 24 24 H 1.08997 * 109.46715 * 59.99750 * 1 2 3 25 25 H 1.09003 * 109.46989 * 59.99628 * 3 2 1 26 26 H 1.09003 * 109.47166 * 300.00179 * 3 2 1 27 27 H 1.08991 * 109.47404 * 60.00363 * 4 3 2 28 28 H 1.08995 * 109.47325 * 299.99747 * 4 3 2 29 29 H 1.00903 * 111.00104 * 56.04742 * 5 4 3 30 30 H 1.09005 * 109.47098 * 59.99674 * 6 5 4 31 31 H 1.09009 * 109.47229 * 300.00402 * 6 5 4 32 32 H 0.96999 * 119.99637 * 359.97438 * 9 7 6 33 33 H 1.09001 * 109.47395 * 64.78624 * 10 9 7 34 34 H 1.09007 * 109.47080 * 304.78945 * 10 9 7 35 35 H 0.97001 * 119.99960 * 184.99387 * 15 14 12 36 36 H 1.09003 * 117.50034 * 214.99852 * 20 11 10 37 37 H 1.09002 * 117.49971 * 0.02686 * 20 11 10 38 38 H 1.08996 * 117.49810 * 359.97342 * 21 11 10 39 39 H 1.08995 * 117.50078 * 144.97442 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9399 -0.0006 5 7 4.0728 3.3713 -0.0013 6 6 5.5275 3.5758 -0.0013 7 6 5.8272 5.0527 -0.0013 8 8 4.9185 5.8559 -0.0017 9 7 7.1051 5.4810 -0.0018 10 6 7.3965 6.9167 -0.0013 11 6 8.9066 7.1306 -0.1225 12 6 9.7286 6.6356 1.0394 13 1 10.1783 5.6543 1.0035 14 6 9.9113 7.4375 2.1459 15 7 9.4450 8.6672 2.1511 16 14 10.8212 6.7774 3.6379 17 1 12.1994 6.3887 3.2452 18 1 10.8823 7.8283 4.6854 19 1 10.1045 5.5904 4.1696 20 6 9.5244 7.0302 -1.5187 21 6 9.3857 8.3948 -0.8390 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8031 2.2372 0.8900 26 1 1.8032 2.2372 -0.8900 27 1 4.1609 1.4705 -0.8908 28 1 4.1617 1.4703 0.8891 29 1 3.6418 3.8423 0.7801 30 1 5.9589 3.1171 -0.8910 31 1 5.9588 3.1178 0.8890 32 1 7.8319 4.8386 -0.0018 33 1 7.0403 7.3594 0.9289 34 1 6.8936 7.3898 -0.8448 35 1 9.6356 9.2550 2.8987 36 1 10.5255 6.6061 -1.5967 37 1 8.8550 6.8122 -2.3508 38 1 8.6251 9.0738 -1.2243 39 1 10.2952 8.8686 -0.4697 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000696901979.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:00 Heat of formation + Delta-G solvation = -19.594075 kcal Electronic energy + Delta-G solvation = -18277.227731 eV Core-core repulsion = 15346.545297 eV Total energy + Delta-G solvation = -2930.682434 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.17408 -36.87826 -36.05117 -33.28542 -31.98956 -31.15746 -29.28207 -27.23815 -25.64380 -24.40015 -22.38461 -21.17603 -19.80243 -19.30111 -17.03924 -16.51762 -16.27856 -16.07618 -15.18464 -14.95510 -14.66620 -14.62021 -14.19682 -13.91909 -13.74273 -13.54374 -13.07921 -12.85955 -12.63039 -12.17852 -11.89670 -11.72629 -11.62996 -11.44756 -10.99841 -10.98057 -10.57222 -10.34728 -10.25087 -9.63270 -9.31302 -9.06323 -8.57505 -8.51224 -8.28194 -8.09818 -8.00738 -6.10026 -4.20232 1.30074 2.25225 3.18060 3.24205 3.30566 3.31441 3.63429 4.31342 4.35669 4.59298 4.71889 4.78125 4.80624 5.14821 5.18743 5.21346 5.33732 5.34232 5.39687 5.47574 5.54133 5.62048 6.02018 6.32667 6.46034 6.55354 6.68981 6.71393 6.86579 7.10854 7.20760 7.27066 7.37803 7.52080 7.78187 8.27741 8.31474 8.80587 8.86539 9.46986 10.97074 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.026475 B = 0.003060 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.350756 B = 9148.261025 C = 9726.399642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 S -0.264 6.264 3 C -0.083 4.083 4 C 0.075 3.925 5 N -0.670 5.670 6 C 0.041 3.959 7 C 0.502 3.498 8 O -0.546 6.546 9 N -0.704 5.704 10 C 0.165 3.835 11 C 0.024 3.976 12 C -0.501 4.501 13 H 0.059 0.941 14 C 0.073 3.927 15 N -0.875 5.875 16 Si 0.891 3.109 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.276 1.276 20 C -0.211 4.211 21 C -0.143 4.143 22 H 0.101 0.899 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.092 0.908 27 H 0.083 0.917 28 H 0.040 0.960 29 H 0.352 0.648 30 H 0.100 0.900 31 H 0.060 0.940 32 H 0.401 0.599 33 H 0.066 0.934 34 H 0.040 0.960 35 H 0.262 0.738 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.748 -14.039 -3.655 18.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 S -0.040 6.040 3 C -0.231 4.231 4 C -0.055 4.055 5 N -0.304 5.304 6 C -0.091 4.091 7 C 0.287 3.713 8 O -0.424 6.424 9 N -0.354 5.354 10 C 0.041 3.959 11 C 0.023 3.977 12 C -0.539 4.539 13 H 0.078 0.922 14 C -0.131 4.131 15 N -0.510 5.510 16 Si 0.719 3.281 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.248 4.248 21 C -0.181 4.181 22 H 0.119 0.881 23 H 0.096 0.904 24 H 0.096 0.904 25 H 0.100 0.900 26 H 0.111 0.889 27 H 0.101 0.899 28 H 0.059 0.941 29 H 0.171 0.829 30 H 0.118 0.882 31 H 0.078 0.922 32 H 0.235 0.765 33 H 0.085 0.915 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.851 -14.077 -4.181 18.871 hybrid contribution 0.287 0.289 1.789 1.835 sum -11.565 -13.788 -2.391 18.154 Atomic orbital electron populations 1.23367 0.93848 1.06487 1.05085 1.86839 1.07673 1.11335 1.98135 1.23350 1.00142 0.93759 1.05862 1.21614 0.92585 0.89296 1.01971 1.60126 1.08865 1.09830 1.51541 1.21809 0.89477 0.94955 1.02892 1.20338 0.83399 0.90211 0.77364 1.90662 1.45200 1.56249 1.50303 1.45963 1.06499 1.09955 1.72943 1.20981 0.96187 0.78487 1.00203 1.19036 0.90008 0.98714 0.89935 1.20315 1.32281 1.02047 0.99247 0.92245 1.24994 0.95027 0.94920 0.98170 1.69978 1.43726 1.05698 1.31640 0.86687 0.80150 0.78706 0.82603 1.20262 1.21266 1.20178 1.23020 1.01251 1.03434 0.97088 1.22469 1.02350 0.89928 1.03324 0.88067 0.90440 0.90352 0.89996 0.88889 0.89877 0.94141 0.82902 0.88195 0.92194 0.76543 0.91546 0.94163 0.92784 0.90396 0.91694 0.91815 0.89521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.75 10.76 101.05 1.09 0.33 16 2 S -0.26 -2.44 22.38 -107.50 -2.41 -4.85 16 3 C -0.08 -0.76 6.20 37.16 0.23 -0.53 16 4 C 0.08 0.76 5.69 -3.82 -0.02 0.74 16 5 N -0.67 -8.47 6.13 -115.06 -0.70 -9.17 16 6 C 0.04 0.54 6.17 -4.98 -0.03 0.51 16 7 C 0.50 9.00 7.87 -10.98 -0.09 8.91 16 8 O -0.55 -11.83 16.20 5.56 0.09 -11.74 16 9 N -0.70 -13.19 5.48 -60.30 -0.33 -13.52 16 10 C 0.16 3.68 5.50 -4.05 -0.02 3.66 16 11 C 0.02 0.55 1.47 -155.66 -0.23 0.32 16 12 C -0.50 -12.70 8.59 -34.44 -0.30 -12.99 16 13 H 0.06 1.47 7.82 -52.48 -0.41 1.06 16 14 C 0.07 1.92 5.43 -17.82 -0.10 1.82 16 15 N -0.87 -24.06 12.65 55.43 0.70 -23.36 16 16 Si 0.89 20.32 29.54 -169.99 -5.02 15.29 16 17 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 20 C -0.21 -4.36 9.96 -26.69 -0.27 -4.62 16 21 C -0.14 -3.26 9.14 -26.69 -0.24 -3.50 16 22 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 23 H 0.08 0.44 8.14 -51.92 -0.42 0.02 16 24 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.08 0.71 8.14 -51.92 -0.42 0.29 16 26 H 0.09 0.87 8.14 -51.92 -0.42 0.45 16 27 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.35 4.58 8.43 -39.29 -0.33 4.25 16 30 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.06 0.70 8.14 -51.92 -0.42 0.27 16 32 H 0.40 6.79 8.33 -40.82 -0.34 6.45 16 33 H 0.07 1.69 8.14 -51.93 -0.42 1.27 16 34 H 0.04 0.90 8.09 -51.92 -0.42 0.48 16 35 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 36 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 37 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.09 2.12 8.14 -51.93 -0.42 1.70 16 LS Contribution 345.45 15.07 5.21 5.21 Total: -1.00 -29.36 345.45 -9.00 -38.35 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -6.56 Total: 9.14 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: 0.02 Total: -5.34 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: -0.33 Total: -46.05 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.09 Total: -11.74 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.29 kcal Atomic # 16 Polarization: -2.44 SS G_CDS: -2.41 Total: -4.85 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.36 -9.00 -38.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696901979.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.759 kcal (2) G-P(sol) polarization free energy of solvation -29.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds