Wall clock time and date at job start Mon Mar 30 2020 06:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81405 * 103.00134 * 2 1 4 4 C 1.52995 * 109.47093 * 180.02562 * 3 2 1 5 5 N 1.46904 * 109.46967 * 179.97438 * 4 3 2 6 6 C 1.46895 * 111.00123 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.47326 * 180.02562 * 6 5 4 8 8 O 1.21277 * 120.00330 * 359.97438 * 7 6 5 9 9 N 1.34782 * 120.00135 * 180.02562 * 7 6 5 10 10 C 1.46495 * 120.00258 * 180.02562 * 9 7 6 11 11 C 1.52992 * 109.47269 * 184.79147 * 10 9 7 12 12 C 1.50694 * 115.55114 * 294.81128 * 11 10 9 13 13 H 1.08008 * 119.99906 * 95.20873 * 12 11 10 14 14 C 1.37875 * 120.00314 * 274.92789 * 12 11 10 15 15 N 1.31509 * 119.99913 * 355.42420 * 14 12 11 16 16 Si 1.86807 * 120.00040 * 175.41703 * 14 12 11 17 17 H 1.48494 * 109.47052 * 60.00642 * 16 14 12 18 18 H 1.48500 * 109.47055 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47106 * 300.00083 * 16 14 12 20 20 C 1.53003 * 117.49834 * 80.48431 * 11 10 9 21 21 C 1.53006 * 117.49908 * 149.14426 * 11 10 9 22 22 H 1.08989 * 109.47145 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46869 * 300.00005 * 1 2 3 24 24 H 1.08997 * 109.46715 * 59.99750 * 1 2 3 25 25 H 1.09003 * 109.46989 * 59.99628 * 3 2 1 26 26 H 1.09003 * 109.47166 * 300.00179 * 3 2 1 27 27 H 1.08991 * 109.47404 * 60.00363 * 4 3 2 28 28 H 1.08995 * 109.47325 * 299.99747 * 4 3 2 29 29 H 1.00903 * 111.00104 * 56.04742 * 5 4 3 30 30 H 1.09005 * 109.47098 * 59.99674 * 6 5 4 31 31 H 1.09009 * 109.47229 * 300.00402 * 6 5 4 32 32 H 0.96999 * 119.99637 * 359.97438 * 9 7 6 33 33 H 1.09001 * 109.47395 * 64.78624 * 10 9 7 34 34 H 1.09007 * 109.47080 * 304.78945 * 10 9 7 35 35 H 0.97001 * 119.99960 * 184.99387 * 15 14 12 36 36 H 1.09003 * 117.50034 * 214.99852 * 20 11 10 37 37 H 1.09002 * 117.49971 * 0.02686 * 20 11 10 38 38 H 1.08996 * 117.49810 * 359.97342 * 21 11 10 39 39 H 1.08995 * 117.50078 * 144.97442 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9399 -0.0006 5 7 4.0728 3.3713 -0.0013 6 6 5.5275 3.5758 -0.0013 7 6 5.8272 5.0527 -0.0013 8 8 4.9185 5.8559 -0.0017 9 7 7.1051 5.4810 -0.0018 10 6 7.3965 6.9167 -0.0013 11 6 8.9066 7.1306 -0.1225 12 6 9.7286 6.6356 1.0394 13 1 10.1783 5.6543 1.0035 14 6 9.9113 7.4375 2.1459 15 7 9.4450 8.6672 2.1511 16 14 10.8212 6.7774 3.6379 17 1 12.1994 6.3887 3.2452 18 1 10.8823 7.8283 4.6854 19 1 10.1045 5.5904 4.1696 20 6 9.5244 7.0302 -1.5187 21 6 9.3857 8.3948 -0.8390 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8031 2.2372 0.8900 26 1 1.8032 2.2372 -0.8900 27 1 4.1609 1.4705 -0.8908 28 1 4.1617 1.4703 0.8891 29 1 3.6418 3.8423 0.7801 30 1 5.9589 3.1171 -0.8910 31 1 5.9588 3.1178 0.8890 32 1 7.8319 4.8386 -0.0018 33 1 7.0403 7.3594 0.9289 34 1 6.8936 7.3898 -0.8448 35 1 9.6356 9.2550 2.8987 36 1 10.5255 6.6061 -1.5967 37 1 8.8550 6.8122 -2.3508 38 1 8.6251 9.0738 -1.2243 39 1 10.2952 8.8686 -0.4697 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000696901979.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:00 Heat of formation + Delta-G solvation = -39.236478 kcal Electronic energy + Delta-G solvation = -18278.079489 eV Core-core repulsion = 15346.545297 eV Total energy + Delta-G solvation = -2931.534193 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.65030 -38.53946 -37.13831 -34.91163 -33.95171 -32.08239 -29.80044 -28.68821 -27.47597 -25.80532 -23.21977 -22.92807 -21.38251 -21.02137 -18.48547 -17.81836 -17.39222 -17.20114 -16.71790 -16.46911 -16.08309 -15.64883 -15.53526 -15.20001 -14.60286 -14.47695 -14.27709 -14.02994 -13.97240 -13.55486 -13.44403 -13.00846 -12.90299 -12.78938 -12.59383 -12.38813 -12.37836 -12.01817 -11.41833 -11.00863 -10.93993 -10.87039 -10.43404 -10.02724 -9.83321 -9.49228 -8.70868 -8.08888 -6.23468 0.64794 1.43998 1.45350 1.51682 1.63112 1.76132 2.29717 2.43173 3.18944 3.31165 3.52548 3.82410 3.94332 3.98071 4.26308 4.32890 4.34992 4.38009 4.44590 4.49067 4.56554 4.66553 4.74690 4.76661 4.84292 4.88889 5.00595 5.04437 5.29363 5.56465 5.61357 5.70572 5.78697 5.82148 6.22259 6.37161 6.80416 6.86128 7.42040 7.46695 8.97890 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.026475 B = 0.003060 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.350756 B = 9148.261025 C = 9726.399642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 S -0.300 6.300 3 C -0.074 4.074 4 C 0.081 3.919 5 N -0.683 5.683 6 C 0.053 3.947 7 C 0.500 3.500 8 O -0.587 6.587 9 N -0.700 5.700 10 C 0.181 3.819 11 C 0.004 3.996 12 C -0.505 4.505 13 H 0.066 0.934 14 C 0.023 3.977 15 N -0.909 5.909 16 Si 0.950 3.050 17 H -0.270 1.270 18 H -0.293 1.293 19 H -0.270 1.270 20 C -0.177 4.177 21 C -0.156 4.156 22 H 0.113 0.887 23 H 0.084 0.916 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.046 0.954 29 H 0.347 0.653 30 H 0.125 0.875 31 H 0.082 0.918 32 H 0.411 0.589 33 H 0.025 0.975 34 H 0.036 0.964 35 H 0.259 0.741 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.067 0.933 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.857 -16.312 -4.053 20.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 S -0.076 6.076 3 C -0.222 4.222 4 C -0.048 4.048 5 N -0.316 5.316 6 C -0.079 4.079 7 C 0.287 3.713 8 O -0.468 6.468 9 N -0.350 5.350 10 C 0.056 3.944 11 C 0.003 3.997 12 C -0.542 4.542 13 H 0.084 0.916 14 C -0.178 4.178 15 N -0.546 5.546 16 Si 0.776 3.224 17 H -0.195 1.195 18 H -0.219 1.219 19 H -0.195 1.195 20 C -0.214 4.214 21 C -0.195 4.195 22 H 0.132 0.868 23 H 0.103 0.897 24 H 0.104 0.896 25 H 0.104 0.896 26 H 0.108 0.892 27 H 0.105 0.895 28 H 0.064 0.936 29 H 0.166 0.834 30 H 0.142 0.858 31 H 0.099 0.901 32 H 0.247 0.753 33 H 0.043 0.957 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.086 0.914 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.945 -16.399 -4.592 20.802 hybrid contribution 0.261 0.979 1.874 2.131 sum -11.684 -15.420 -2.718 19.537 Atomic orbital electron populations 1.23438 0.91010 1.07575 1.05849 1.86934 1.10911 1.11577 1.98219 1.23242 0.99541 0.93573 1.05860 1.21604 0.93248 0.87658 1.02334 1.60133 1.08526 1.11403 1.51586 1.21770 0.90197 0.90933 1.05005 1.21213 0.82281 0.92192 0.75616 1.90644 1.46256 1.57970 1.51935 1.45846 1.07514 1.08550 1.73132 1.20520 0.95483 0.80570 0.97814 1.19073 0.90237 0.99348 0.91036 1.20658 1.31723 1.02100 0.99762 0.91606 1.25725 0.96142 0.95125 1.00784 1.70112 1.45386 1.06875 1.32259 0.85737 0.79321 0.77936 0.79359 1.19471 1.21921 1.19511 1.23001 1.01688 1.00665 0.96008 1.22394 1.01670 0.90799 1.04612 0.86810 0.89658 0.89620 0.89635 0.89238 0.89545 0.93592 0.83412 0.85755 0.90069 0.75261 0.95682 0.94614 0.93239 0.89619 0.89404 0.91412 0.91735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 10.76 113.37 1.22 0.04 16 2 S -0.30 -5.11 22.38 -56.49 -1.26 -6.37 16 3 C -0.07 -1.24 6.20 71.98 0.45 -0.79 16 4 C 0.08 1.48 5.69 86.30 0.49 1.97 16 5 N -0.68 -16.09 6.13 -517.94 -3.17 -19.27 16 6 C 0.05 1.26 6.17 85.56 0.53 1.79 16 7 C 0.50 17.40 7.87 87.66 0.69 18.09 16 8 O -0.59 -25.52 16.20 -3.02 -0.05 -25.57 16 9 N -0.70 -25.53 5.48 -463.07 -2.54 -28.07 16 10 C 0.18 8.14 5.50 86.38 0.48 8.61 16 11 C 0.00 0.17 1.47 -52.93 -0.08 0.10 16 12 C -0.50 -25.26 8.59 25.60 0.22 -25.04 16 13 H 0.07 3.14 7.82 -2.91 -0.02 3.12 16 14 C 0.02 1.20 5.43 84.65 0.46 1.66 16 15 N -0.91 -51.04 12.65 21.45 0.27 -50.77 16 16 Si 0.95 41.55 29.54 68.60 2.03 43.58 16 17 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 18 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 19 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 20 C -0.18 -6.96 9.96 30.62 0.30 -6.66 16 21 C -0.16 -7.16 9.14 30.62 0.28 -6.88 16 22 H 0.11 0.93 8.14 -2.40 -0.02 0.91 16 23 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 24 H 0.08 0.80 8.14 -2.39 -0.02 0.79 16 25 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.35 8.69 8.43 -89.69 -0.76 7.93 16 30 H 0.12 2.39 8.14 -2.38 -0.02 2.37 16 31 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 32 H 0.41 13.15 8.33 -92.71 -0.77 12.38 16 33 H 0.02 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.04 1.62 8.09 -2.38 -0.02 1.60 16 35 H 0.26 14.07 8.32 -92.71 -0.77 13.30 16 36 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 37 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 38 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 39 H 0.06 3.21 8.14 -2.39 -0.02 3.19 16 Total: -1.00 -63.37 345.45 -0.18 -63.56 By element: Atomic # 1 Polarization: 30.52 SS G_CDS: -0.49 Total: 30.02 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: 5.04 Total: -7.11 kcal Atomic # 7 Polarization: -92.66 SS G_CDS: -5.44 Total: -98.10 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: -0.05 Total: -25.57 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Atomic # 16 Polarization: -5.11 SS G_CDS: -1.26 Total: -6.37 kcal Total: -63.37 -0.18 -63.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696901979.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.319 kcal (2) G-P(sol) polarization free energy of solvation -63.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds