Wall clock time and date at job start Mon Mar 30 2020 05:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47603 * 2 1 4 4 C 1.50703 * 109.47159 * 239.99741 * 2 1 3 5 5 H 1.07997 * 119.99887 * 239.99925 * 4 2 1 6 6 C 1.37868 * 119.99742 * 60.00411 * 4 2 1 7 7 N 1.31517 * 120.00225 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00075 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46775 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47053 * 119.99687 * 8 6 4 11 11 H 1.48501 * 109.47203 * 239.99716 * 8 6 4 12 12 C 1.53008 * 109.47314 * 120.00080 * 2 1 3 13 13 N 1.46506 * 109.46685 * 299.99752 * 12 2 1 14 14 C 1.34774 * 119.99810 * 179.97438 * 13 12 2 15 15 O 1.21285 * 120.00117 * 0.02562 * 14 13 12 16 16 C 1.50702 * 120.00214 * 180.02562 * 14 13 12 17 17 H 1.09004 * 109.62525 * 334.60454 * 16 14 13 18 18 C 1.53246 * 109.63029 * 214.01390 * 16 14 13 19 19 N 1.46514 * 109.79091 * 178.25772 * 18 16 14 20 20 C 1.46467 * 112.53335 * 72.77821 * 19 18 16 21 21 C 1.53250 * 109.79543 * 287.22087 * 20 19 18 22 22 S 1.81895 * 108.50680 * 62.04319 * 21 20 19 23 23 H 1.09007 * 109.46776 * 299.99884 * 1 2 3 24 24 H 1.08997 * 109.47022 * 59.99501 * 1 2 3 25 25 H 1.08995 * 109.47397 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.48031 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.47339 * 300.00305 * 3 2 1 28 28 H 1.09008 * 109.47351 * 59.99861 * 3 2 1 29 29 H 0.97005 * 120.00285 * 180.02562 * 7 6 4 30 30 H 1.08993 * 109.47756 * 180.02562 * 12 2 1 31 31 H 1.09001 * 109.46906 * 59.99149 * 12 2 1 32 32 H 0.97000 * 120.00202 * 0.02562 * 13 12 2 33 33 H 1.08993 * 109.41127 * 298.40736 * 18 16 14 34 34 H 1.09001 * 109.40580 * 58.25442 * 18 16 14 35 35 H 1.00896 * 111.07372 * 307.62538 * 19 18 16 36 36 H 1.09002 * 109.40640 * 167.14035 * 20 19 18 37 37 H 1.08997 * 109.40556 * 47.30161 * 20 19 18 38 38 H 1.08992 * 109.63202 * 181.75001 * 21 20 19 39 39 H 1.08998 * 109.63045 * 302.14200 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4826 7 7 0.9429 0.8296 -2.6033 8 14 2.3214 -1.1204 -4.0079 9 1 3.1464 -2.2871 -3.6037 10 1 1.1660 -1.5867 -4.8160 11 1 3.1466 -0.1875 -4.8165 12 6 2.0401 -0.7213 1.2493 13 7 1.5517 -0.0306 2.4455 14 6 1.8769 -0.4913 3.6695 15 8 2.5742 -1.4774 3.7809 16 6 1.3742 0.2188 4.9000 17 1 1.1745 1.2640 4.6637 18 6 2.4255 0.1298 6.0115 19 7 1.9579 0.8546 7.1958 20 6 0.8835 0.1488 7.8979 21 6 -0.4140 0.2408 7.0876 22 16 -0.1529 -0.5782 5.4846 23 1 -0.3633 0.5139 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 3.1301 1.4425 0.0005 27 1 1.6768 1.9563 -0.8899 28 1 1.6768 1.9564 0.8900 29 1 0.7082 1.1609 -3.4844 30 1 3.1300 -0.7209 1.2496 31 1 1.6766 -1.7489 1.2493 32 1 0.9938 0.7579 2.3564 33 1 2.5933 -0.9160 6.2685 34 1 3.3591 0.5715 5.6631 35 1 1.6786 1.7947 6.9590 36 1 0.7318 0.6025 8.8774 37 1 1.1592 -0.8983 8.0226 38 1 -1.2188 -0.2584 7.6271 39 1 -0.6735 1.2875 6.9294 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699081969.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:56 Heat of formation + Delta-G solvation = -42.785687 kcal Electronic energy + Delta-G solvation = -19355.622781 eV Core-core repulsion = 16423.934683 eV Total energy + Delta-G solvation = -2931.688098 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.58564 -37.58030 -36.36056 -33.36731 -32.04039 -30.83574 -28.96904 -25.77479 -25.75287 -25.11900 -23.60350 -22.24088 -20.30020 -18.85190 -17.84053 -16.99813 -15.82536 -15.68034 -15.21049 -15.14278 -14.80167 -14.68427 -14.30635 -13.76068 -13.60183 -13.13530 -12.93812 -12.55198 -12.22484 -12.13311 -11.98136 -11.41441 -11.23639 -11.17153 -10.89715 -10.67949 -10.42048 -10.29203 -10.22516 -9.76405 -9.66778 -9.36740 -8.96976 -8.79986 -8.51444 -8.36251 -7.82778 -6.04079 -4.14245 1.15550 2.14492 3.16267 3.26291 3.34850 3.38474 3.46370 3.87856 4.37389 4.39119 4.47746 4.70698 4.76050 4.98623 5.09485 5.22897 5.24932 5.35093 5.54068 5.80333 6.17157 6.28094 6.46907 6.54490 6.71495 6.79638 6.88794 6.90029 6.95261 6.98943 7.32130 7.52922 7.67323 7.92764 7.98175 8.11219 8.35163 8.54300 8.86489 9.51838 10.97377 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.042576 B = 0.003930 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.489396 B = 7123.300735 C = 7264.878153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.055 3.945 3 C -0.130 4.130 4 C -0.506 4.506 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.131 3.869 13 N -0.706 5.706 14 C 0.528 3.472 15 O -0.535 6.535 16 C -0.119 4.119 17 H 0.103 0.897 18 C 0.076 3.924 19 N -0.688 5.688 20 C 0.056 3.944 21 C -0.131 4.131 22 S -0.214 6.214 23 H 0.006 0.994 24 H 0.086 0.914 25 H 0.027 0.973 26 H 0.027 0.973 27 H 0.086 0.914 28 H 0.005 0.995 29 H 0.259 0.741 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.399 0.601 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.344 0.656 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.113 0.887 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.438 3.352 17.389 17.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.544 4.544 5 H 0.077 0.923 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.211 1.211 12 C 0.009 3.991 13 N -0.356 5.356 14 C 0.310 3.690 15 O -0.412 6.412 16 C -0.253 4.253 17 H 0.122 0.878 18 C -0.056 4.056 19 N -0.316 5.316 20 C -0.075 4.075 21 C -0.282 4.282 22 S 0.012 5.988 23 H 0.025 0.975 24 H 0.104 0.896 25 H 0.046 0.954 26 H 0.046 0.954 27 H 0.105 0.895 28 H 0.024 0.976 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.235 0.765 33 H 0.117 0.883 34 H 0.110 0.890 35 H 0.163 0.837 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.131 0.869 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.149 1.703 17.204 17.421 hybrid contribution -0.209 1.143 -1.044 1.562 sum -2.358 2.846 16.160 16.578 Atomic orbital electron populations 1.21827 0.97645 0.99259 1.00095 1.18374 0.92888 0.92760 0.90507 1.21830 0.98580 0.98326 1.00070 1.21012 1.31464 1.12107 0.89832 0.92349 1.24878 0.94833 0.94917 0.98875 1.69814 1.36667 1.22803 1.23143 0.86511 0.78650 0.79763 0.82948 1.19734 1.21039 1.21051 1.21795 0.98222 0.95907 0.83163 1.46312 1.51841 1.31729 1.05726 1.19369 0.81201 0.84693 0.83740 1.90694 1.38329 1.25728 1.86482 1.24246 0.98558 1.02870 0.99643 0.87843 1.22151 0.95692 1.01680 0.86028 1.60087 1.39066 1.06013 1.26464 1.22276 0.87147 1.01124 0.96974 1.24373 1.03402 1.03811 0.96570 1.87487 1.31165 1.56755 1.23377 0.97506 0.89560 0.95398 0.95399 0.89531 0.97618 0.93047 0.92469 0.92509 0.76550 0.88252 0.88977 0.83744 0.89307 0.89336 0.86888 0.89627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 2 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 3 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 4 C -0.51 -13.20 8.01 -34.44 -0.28 -13.48 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.50 9.35 55.43 0.52 -22.98 16 8 Si 0.89 20.68 29.54 -169.99 -5.02 15.65 16 9 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 C 0.13 2.78 4.50 -4.03 -0.02 2.77 16 13 N -0.71 -12.54 4.96 -60.29 -0.30 -12.84 16 14 C 0.53 9.06 6.87 -10.99 -0.08 8.99 16 15 O -0.53 -11.00 16.30 5.55 0.09 -10.91 16 16 C -0.12 -1.52 3.03 -27.75 -0.08 -1.61 16 17 H 0.10 1.13 8.12 -51.93 -0.42 0.70 16 18 C 0.08 0.88 5.34 -3.91 -0.02 0.85 16 19 N -0.69 -6.22 6.70 -114.11 -0.76 -6.98 16 20 C 0.06 0.44 6.42 -3.93 -0.03 0.41 16 21 C -0.13 -1.07 6.59 37.29 0.25 -0.83 16 22 S -0.21 -2.73 21.75 -107.50 -2.34 -5.07 16 23 H 0.01 0.12 6.86 -51.92 -0.36 -0.24 16 24 H 0.09 2.16 6.07 -51.93 -0.32 1.84 16 25 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.09 2.14 6.07 -51.93 -0.32 1.82 16 28 H 0.00 0.10 6.86 -51.92 -0.36 -0.26 16 29 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 30 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.40 6.49 6.15 -40.82 -0.25 6.24 16 33 H 0.10 1.32 7.69 -51.93 -0.40 0.92 16 34 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.34 2.62 8.65 -39.29 -0.34 2.28 16 36 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.09 0.78 7.91 -51.93 -0.41 0.37 16 38 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 318.05 15.07 4.79 4.79 Total: -1.00 -28.48 318.05 -8.93 -37.42 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -6.09 Total: 6.22 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: 0.18 Total: -5.31 kcal Atomic # 7 Polarization: -42.25 SS G_CDS: -0.54 Total: -42.80 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.09 Total: -10.91 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: -2.73 SS G_CDS: -2.34 Total: -5.07 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.48 -8.93 -37.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699081969.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.369 kcal (2) G-P(sol) polarization free energy of solvation -28.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds